RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SPG7Q9UQ90 795 aa10.2□□□□□ -0.78
YBX3-209ENST00000540747 ATG3Q9NT62 314 aa10.19□□□□□ -0.78
YBX3-209ENST00000540747 POLKQ9UBT6 870 aa10.19□□□□□ -0.78
YBX3-209ENST00000540747 GNPATO15228 680 aa10.18□□□□□ -0.78
YBX3-209ENST00000540747 TMOD3Q9NYL9 352 aa10.18□□□□□ -0.78
YBX3-209ENST00000540747 COL5A3P25940 1745 aaPredicted RBP10.17□□□□□ -0.78
YBX3-209ENST00000540747 MMP10P09238 476 aa10.17□□□□□ -0.78
YBX3-209ENST00000540747 EIF4A2Q14240 407 aaKnown RBP10.17□□□□□ -0.78
YBX3-209ENST00000540747 IFNL2Q8IZJ0 200 aa10.17□□□□□ -0.78
YBX3-209ENST00000540747 KDM6AO15550 1401 aaPredicted RBP10.16□□□□□ -0.78
YBX3-209ENST00000540747 CNTNAP4Q9C0A0 1308 aa10.16□□□□□ -0.78
YBX3-209ENST00000540747 ATP6V1AP38606 617 aa10.16□□□□□ -0.78
YBX3-209ENST00000540747 RC3H1Q5TC82 1133 aaKnown RBP10.16□□□□□ -0.78
YBX3-209ENST00000540747 ZNF526Q8TF50 670 aaPredicted RBP10.16□□□□□ -0.78
YBX3-209ENST00000540747 WWC3Q9ULE0 1092 aa10.16□□□□□ -0.78
YBX3-209ENST00000540747 BRCA1P38398 1863 aaKnown RBP10.16□□□□□ -0.78
YBX3-209ENST00000540747 C4AP0C0L4 1744 aa10.16□□□□□ -0.78
YBX3-209ENST00000540747 ERVV-2B6SEH9 535 aa10.15□□□□□ -0.78
YBX3-209ENST00000540747 GYS1P13807 737 aa10.15□□□□□ -0.78
YBX3-209ENST00000540747 ADRA2BP18089 450 aa10.15□□□□□ -0.78
YBX3-209ENST00000540747 TGFB2P61812 414 aa10.15□□□□□ -0.78
YBX3-209ENST00000540747 MYH14Q7Z406 1995 aaKnown RBP10.14□□□□□ -0.79
YBX3-209ENST00000540747 PPM1GO15355 546 aaPredicted RBP10.14□□□□□ -0.79
YBX3-209ENST00000540747 KCNA3P22001 575 aa10.14□□□□□ -0.79
YBX3-209ENST00000540747 NLGN1Q8N2Q7 840 aa10.14□□□□□ -0.79
YBX3-209ENST00000540747 ARHGEF1Q92888 912 aaKnown RBP10.14□□□□□ -0.79
YBX3-209ENST00000540747 N4BP2Q86UW6 1770 aaPredicted RBP10.14□□□□□ -0.79
YBX3-209ENST00000540747 ADAMTS7Q9UKP4 1686 aa10.13□□□□□ -0.79
YBX3-209ENST00000540747 RPS6KA4O75676 772 aa10.13□□□□□ -0.79
YBX3-209ENST00000540747 TRAPPC3LQ5T215 181 aa10.13□□□□□ -0.79
YBX3-209ENST00000540747 DNAJC5GQ8N7S2 189 aa10.13□□□□□ -0.79
YBX3-209ENST00000540747 DCAF5Q96JK2 942 aa10.13□□□□□ -0.79
YBX3-209ENST00000540747 RTCBQ9Y3I0 505 aaKnown RBP10.13□□□□□ -0.79
YBX3-209ENST00000540747 A0A0G2JLW4 131 aa10.12□□□□□ -0.79
YBX3-209ENST00000540747 DPEP1P16444 411 aa10.12□□□□□ -0.79
YBX3-209ENST00000540747 ARFGEF1Q9Y6D6 1849 aa10.12□□□□□ -0.79
YBX3-209ENST00000540747 TJP1Q07157 1748 aa10.11□□□□□ -0.79
YBX3-209ENST00000540747 TOMM70O94826 608 aa10.11□□□□□ -0.79
YBX3-209ENST00000540747 HSP90AB1P08238 724 aaKnown RBP10.11□□□□□ -0.79
YBX3-209ENST00000540747 APLP1P51693 650 aa10.11□□□□□ -0.79
YBX3-209ENST00000540747 TIMELESSQ9UNS1 1208 aa10.11□□□□□ -0.79
YBX3-209ENST00000540747 BCS1LQ9Y276 419 aa10.11□□□□□ -0.79
YBX3-209ENST00000540747 PCNTO95613 3336 aa10.1□□□□□ -0.79
YBX3-209ENST00000540747 DDR1Q08345 913 aa10.1□□□□□ -0.79
YBX3-209ENST00000540747 NMRK2Q9NPI5 230 aa10.1□□□□□ -0.79
YBX3-209ENST00000540747 CCDC87Q9NVE4 849 aa10.1□□□□□ -0.79
YBX3-209ENST00000540747 USP42Q9H9J4 1324 aaKnown RBP10.09□□□□□ -0.79
YBX3-209ENST00000540747 CRKLP46109 303 aaKnown RBP10.09□□□□□ -0.79
YBX3-209ENST00000540747 AMOTQ4VCS5 1084 aa10.09□□□□□ -0.79
YBX3-209ENST00000540747 PLEKHO1Q53GL0 409 aaPredicted RBP10.09□□□□□ -0.79
YBX3-209ENST00000540747 ZNF530Q6P9A1 599 aaPredicted RBP10.09□□□□□ -0.79
YBX3-209ENST00000540747 AEBP1Q8IUX7 1158 aa10.09□□□□□ -0.79
YBX3-209ENST00000540747 RBM42Q9BTD8 480 aaKnown RBP10.09□□□□□ -0.79
YBX3-209ENST00000540747 MRC1P22897 1456 aa10.09□□□□□ -0.79
YBX3-209ENST00000540747 FCHSD2O94868 740 aa10.08□□□□□ -0.8
YBX3-209ENST00000540747 RFC4P35249 363 aa10.08□□□□□ -0.8
YBX3-209ENST00000540747 TNNT2P45379 298 aaPredicted RBP10.08□□□□□ -0.8
YBX3-209ENST00000540747 FKBP8Q14318 412 aa10.08□□□□□ -0.8
YBX3-209ENST00000540747 INTS5Q6P9B9 1019 aaKnown RBP10.08□□□□□ -0.8
YBX3-209ENST00000540747 ARHGAP27Q6ZUM4 889 aa10.08□□□□□ -0.8
YBX3-209ENST00000540747 RBM46Q8TBY0 533 aaKnown RBP10.08□□□□□ -0.8
YBX3-209ENST00000540747 SRP68Q9UHB9 627 aaKnown RBP10.08□□□□□ -0.8
YBX3-209ENST00000540747 PARP3Q9Y6F1 533 aa10.08□□□□□ -0.8
YBX3-209ENST00000540747 WDR90Q96KV7 1748 aa10.07□□□□□ -0.8
YBX3-209ENST00000540747 POLRMTO00411 1230 aaKnown RBP10.07□□□□□ -0.8
YBX3-209ENST00000540747 TM4SF1P30408 202 aa10.07□□□□□ -0.8
YBX3-209ENST00000540747 CABP4P57796 275 aa10.07□□□□□ -0.8
YBX3-209ENST00000540747 C9orf131Q5VYM1 1079 aa10.07□□□□□ -0.8
YBX3-209ENST00000540747 SCN11AQ9UI33 1791 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 PTCD1O75127 700 aaKnown RBP10.06□□□□□ -0.8
YBX3-209ENST00000540747 IL13P35225 146 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 JMYQ8N9B5 988 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 NFATC2IPQ8NCF5 419 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 PANK3Q9H999 370 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 PIM2Q9P1W9 311 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 NRXN2Q9P2S2 1712 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 KCPQ6ZWJ8 1503 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 SOS1Q07889 1333 aaPredicted RBP10.06□□□□□ -0.8
YBX3-209ENST00000540747 CLSPNQ9HAW4 1339 aa10.06□□□□□ -0.8
YBX3-209ENST00000540747 MTHFSP49914 203 aa10.05□□□□□ -0.8
YBX3-209ENST00000540747 FSTL1Q12841 308 aa10.05□□□□□ -0.8
YBX3-209ENST00000540747 DALRD3Q5D0E6 543 aaKnown RBP10.05□□□□□ -0.8
YBX3-209ENST00000540747 SBF1O95248 1867 aa10.04□□□□□ -0.8
YBX3-209ENST00000540747 TNRC6CQ9HCJ0 1690 aaKnown RBP10.04□□□□□ -0.8
YBX3-209ENST00000540747 CHRNA5P30532 468 aa10.04□□□□□ -0.8
YBX3-209ENST00000540747 PRELPP51888 382 aa10.04□□□□□ -0.8
YBX3-209ENST00000540747 TRIM26Q12899 539 aaPredicted RBP10.04□□□□□ -0.8
YBX3-209ENST00000540747 ZC3H4Q9UPT8 1303 aaKnown RBP10.04□□□□□ -0.8
YBX3-209ENST00000540747 HSPA5P11021 654 aaKnown RBP10.03□□□□□ -0.8
YBX3-209ENST00000540747 CYP19A1P11511 503 aaPredicted RBP10.03□□□□□ -0.8
YBX3-209ENST00000540747 C1orf141Q5JVX7 400 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 SULT6B1Q6IMI4 303 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 DNAJC10Q8IXB1 793 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 KLRG1Q96E93 195 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 SLC52A2Q9HAB3 445 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 BCL2L12Q9HB09 334 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 RNF181Q9P0P0 153 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 DLEC1Q9Y238 1755 aa10.03□□□□□ -0.8
YBX3-209ENST00000540747 HTRA3P83110 453 aa10.02□□□□□ -0.81
YBX3-209ENST00000540747 AKAP4Q5JQC9 854 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms