RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ZNF644Q9H582 1327 aaPredicted RBP14.75□□□□□ -0.05
USP3-203ENST00000538686 SHPRHQ149N8 1683 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 NYAP1Q6ZVC0 841 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.75□□□□□ -0.05
USP3-203ENST00000538686 UBXN6Q9BZV1 441 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 KCND1Q9NSA2 647 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 MED14O60244 1454 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 IQGAP1P46940 1657 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 AP5Z1O43299 807 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 ZRANB2O95218 330 aaKnown RBP eCLIP14.74□□□□□ -0.05
USP3-203ENST00000538686 TPM1P09493 284 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 TMEM57Q8N5G2 664 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 ZNF592Q92610 1267 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 TMX3Q96JJ7 454 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 LCMT1Q9UIC8 334 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 NOS1P29475 1434 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 MYOM2P54296 1465 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 ADCY10Q96PN6 1610 aa14.74□□□□□ -0.05
USP3-203ENST00000538686 CDC25BP30305 580 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 CLCN6P51797 869 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 DRC7Q8IY82 874 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 TACO1Q9BSH4 297 aaKnown RBP14.73□□□□□ -0.05
USP3-203ENST00000538686 SUFUQ9UMX1 484 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 MYO5CQ9NQX4 1742 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 LEKR1Q6ZMV7 388 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 SMARCE1Q969G3 411 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 CHAMP1Q96JM3 812 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 ATP6V1DQ9Y5K8 247 aa14.73□□□□□ -0.05
USP3-203ENST00000538686 ZNF853P0CG23 659 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 ACTN2P35609 894 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 FOXD4L5Q5VV16 416 aaPredicted RBP14.72□□□□□ -0.05
USP3-203ENST00000538686 EP400NLQ6ZTU2 488 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.05
USP3-203ENST00000538686 FOXD4L4Q8WXT5 416 aaPredicted RBP14.72□□□□□ -0.05
USP3-203ENST00000538686 KDM5AP29375 1690 aaKnown RBP14.72□□□□□ -0.05
USP3-203ENST00000538686 SYNJ2O15056 1496 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 CPP00450 1065 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 MMS22LQ6ZRQ5 1243 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 ANKRD20A12PQ8NF67 263 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 L2HGDHQ9H9P8 463 aa14.72□□□□□ -0.05
USP3-203ENST00000538686 ERBB3P21860 1342 aa14.71□□□□□ -0.05
USP3-203ENST00000538686 RPS6KA5O75582 802 aa14.71□□□□□ -0.05
USP3-203ENST00000538686 MAP2K2P36507 400 aa14.71□□□□□ -0.05
USP3-203ENST00000538686 TSGA10IPQ3SY00 556 aa14.71□□□□□ -0.05
USP3-203ENST00000538686 PACS2Q86VP3 889 aa14.71□□□□□ -0.05
USP3-203ENST00000538686 PPRC1Q5VV67 1664 aaKnown RBP14.71□□□□□ -0.05
USP3-203ENST00000538686 PPIP5K1Q6PFW1 1433 aa14.71□□□□□ -0.06
USP3-203ENST00000538686 RPAP1Q9BWH6 1393 aaPredicted RBP14.71□□□□□ -0.06
USP3-203ENST00000538686 TTC22Q5TAA0 569 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 PLA2G4DQ86XP0 818 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 DNMBPQ6XZF7 1577 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 GOLIM4O00461 696 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 KIF3CO14782 793 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 POLR3GO15318 223 aaPredicted RBP14.7□□□□□ -0.06
USP3-203ENST00000538686 MAP2K1Q02750 393 aaPredicted RBP14.7□□□□□ -0.06
USP3-203ENST00000538686 LRMPQ12912 555 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 NEUROD2Q15784 382 aa14.7□□□□□ -0.06
USP3-203ENST00000538686 GSPT1P15170 499 aaKnown RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 ZNF75DP51815 510 aa14.69□□□□□ -0.06
USP3-203ENST00000538686 ZRSR1Q15695 479 aaKnown RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 SSH1Q8WYL5 1049 aa14.69□□□□□ -0.06
USP3-203ENST00000538686 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP3-203ENST00000538686 NOB1Q9ULX3 412 aaKnown RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 PPP1R12AO14974 1030 aaPredicted RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 SMARCA5O60264 1052 aaPredicted RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 ST5P78524 1137 aa14.69□□□□□ -0.06
USP3-203ENST00000538686 MKRN1Q9UHC7 482 aaKnown RBP14.69□□□□□ -0.06
USP3-203ENST00000538686 ADGRB2O60241 1585 aa14.68□□□□□ -0.06
USP3-203ENST00000538686 AATKQ6ZMQ8 1374 aa14.68□□□□□ -0.06
USP3-203ENST00000538686 OAS2P29728 719 aaKnown RBP14.68□□□□□ -0.06
USP3-203ENST00000538686 USP8P40818 1118 aa14.68□□□□□ -0.06
USP3-203ENST00000538686 ALDH1L2Q3SY69 923 aa14.68□□□□□ -0.06
USP3-203ENST00000538686 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP3-203ENST00000538686 CAVIN2O95810 425 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 FAM107BQ9H098 131 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 CFDP1Q9UEE9 299 aaPredicted RBP14.67□□□□□ -0.06
USP3-203ENST00000538686 IL16Q14005 1332 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 ANAPC15P60006 121 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 GIMAP6Q6P9H5 292 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 EFCAB13Q8IY85 973 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 ZNF428Q96B54 188 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 SRRTQ9BXP5 876 aaKnown RBP14.67□□□□□ -0.06
USP3-203ENST00000538686 TRIM5Q9C035 493 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 GDPD2Q9HCC8 539 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 RRP7AQ9Y3A4 280 aaKnown RBP14.67□□□□□ -0.06
USP3-203ENST00000538686 RTL1A6NKG5 1358 aa14.67□□□□□ -0.06
USP3-203ENST00000538686 PDS5BQ9NTI5 1447 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 EIF3CLB5ME19 914 aaKnown RBP14.66□□□□□ -0.06
USP3-203ENST00000538686 ERC2O15083 957 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 NEK4P51957 841 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 CORO7P57737 925 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 SART3Q15020 963 aaKnown RBP14.66□□□□□ -0.06
USP3-203ENST00000538686 ARHGAP29Q52LW3 1261 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 LRCH2Q5VUJ6 765 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 PLEKHM2Q8IWE5 1019 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 EIF3CQ99613 913 aaKnown RBP14.66□□□□□ -0.06
USP3-203ENST00000538686 CLIP2Q9UDT6 1046 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 SPAG9O60271 1321 aaKnown RBP14.66□□□□□ -0.06
USP3-203ENST00000538686 CEP152O94986 1710 aa14.66□□□□□ -0.06
USP3-203ENST00000538686 SMC1AQ14683 1233 aaKnown RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms