RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 HRH3Q9Y5N1 445 aa9.11□□□□□ -0.95
USP47-211ENST00000531513 ZSCAN10Q96SZ4 725 aaPredicted RBP9.1□□□□□ -0.95
USP47-211ENST00000531513 TBC1D2BQ9UPU7 963 aa9.1□□□□□ -0.95
USP47-211ENST00000531513 PHF20L1A8MW92 1017 aa9.09□□□□□ -0.95
USP47-211ENST00000531513 FHDC1Q9C0D6 1143 aaPredicted RBP9.09□□□□□ -0.95
USP47-211ENST00000531513 NSFL1CQ9UNZ2 370 aaKnown RBP9.09□□□□□ -0.95
USP47-211ENST00000531513 A0A1B0GTH6 734 aa9.08□□□□□ -0.96
USP47-211ENST00000531513 PODNQ7Z5L7 613 aa9.08□□□□□ -0.96
USP47-211ENST00000531513 XAGE2Q96GT9 111 aa9.08□□□□□ -0.96
USP47-211ENST00000531513 GNASQ5JWF2 1037 aa9.07□□□□□ -0.96
USP47-211ENST00000531513 DCAF5Q96JK2 942 aa9.07□□□□□ -0.96
USP47-211ENST00000531513 LRRC4BQ9NT99 713 aa9.07□□□□□ -0.96
USP47-211ENST00000531513 OIP5O43482 229 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 STAU1O95793 577 aaKnown RBP9.06□□□□□ -0.96
USP47-211ENST00000531513 MAP2K3P46734 347 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 PLA2G4EQ3MJ16 856 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 TSGA10IPQ3SY00 556 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 C4orf17Q53FE4 359 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 TMEM214Q6NUQ4 689 aaKnown RBP9.06□□□□□ -0.96
USP47-211ENST00000531513 BEND7Q8N7W2 519 aaPredicted RBP9.06□□□□□ -0.96
USP47-211ENST00000531513 CFHR5Q9BXR6 569 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 OXCT2Q9BYC2 517 aaPredicted RBP9.06□□□□□ -0.96
USP47-211ENST00000531513 DOLKQ9UPQ8 538 aa9.06□□□□□ -0.96
USP47-211ENST00000531513 GTF2E1P29083 439 aaPredicted RBP9.05□□□□□ -0.96
USP47-211ENST00000531513 IRF5Q13568 498 aa9.05□□□□□ -0.96
USP47-211ENST00000531513 UBAP2LQ14157 1087 aaKnown RBP9.05□□□□□ -0.96
USP47-211ENST00000531513 ESCO1Q5FWF5 840 aa9.05□□□□□ -0.96
USP47-211ENST00000531513 RUBCNLQ9H714 662 aa9.05□□□□□ -0.96
USP47-211ENST00000531513 ETNK1Q9HBU6 452 aa9.05□□□□□ -0.96
USP47-211ENST00000531513 ITGB2P05107 769 aa9.04□□□□□ -0.96
USP47-211ENST00000531513 EIF4G2P78344 907 aaKnown RBP eCLIP9.04□□□□□ -0.96
USP47-211ENST00000531513 PHTF2Q8N3S3 785 aa9.04□□□□□ -0.96
USP47-211ENST00000531513 SHISA8B8ZZ34 492 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 ADAM23O75077 832 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 MSX1P28360 303 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 OXLD1Q5BKU9 147 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 RNF135Q8IUD6 432 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 PHF24Q9UPV7 400 aa9.03□□□□□ -0.96
USP47-211ENST00000531513 CSB-PGBD3P0DP91 1061 aa9.02□□□□□ -0.97
USP47-211ENST00000531513 SNRPNP63162 240 aaKnown RBP9.02□□□□□ -0.97
USP47-211ENST00000531513 LBRQ14739 615 aaKnown RBP9.02□□□□□ -0.97
USP47-211ENST00000531513 TLR1Q15399 786 aa9.02□□□□□ -0.97
USP47-211ENST00000531513 SLFNL1Q499Z3 407 aa9.02□□□□□ -0.97
USP47-211ENST00000531513 PGBD3Q8N328 593 aa9.02□□□□□ -0.97
USP47-211ENST00000531513 KLRG1Q96E93 195 aa9.02□□□□□ -0.97
USP47-211ENST00000531513 MSTNO14793 375 aa9.01□□□□□ -0.97
USP47-211ENST00000531513 USP4Q13107 963 aa9.01□□□□□ -0.97
USP47-211ENST00000531513 C1orf229Q6ZS94 237 aaPredicted RBP9.01□□□□□ -0.97
USP47-211ENST00000531513 RHBDD1Q8TEB9 315 aa9.01□□□□□ -0.97
USP47-211ENST00000531513 SPOCK3Q9BQ16 436 aa9.01□□□□□ -0.97
USP47-211ENST00000531513 PPARGC1BQ86YN6 1023 aaKnown RBP9□□□□□ -0.97
USP47-211ENST00000531513 ABHD17AQ96GS6 310 aa9□□□□□ -0.97
USP47-211ENST00000531513 KRTAP4-8Q9BYQ9 185 aa9□□□□□ -0.97
USP47-211ENST00000531513 PRM3Q9NNZ6 103 aa9□□□□□ -0.97
USP47-211ENST00000531513 CHIC2Q9UKJ5 165 aa9□□□□□ -0.97
USP47-211ENST00000531513 ATXN7L1Q9ULK2 861 aaPredicted RBP9□□□□□ -0.97
USP47-211ENST00000531513 VAC14Q08AM6 782 aa8.99□□□□□ -0.97
USP47-211ENST00000531513 EFHC2Q5JST6 749 aa8.99□□□□□ -0.97
USP47-211ENST00000531513 GALNT6Q8NCL4 622 aa8.99□□□□□ -0.97
USP47-211ENST00000531513 C2CD2LO14523 706 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 PROCP04070 461 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 BMP4P12644 408 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 PLA2G4AP47712 749 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 SCNN1DP51172 638 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 CRISPLD1Q9H336 500 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 NDFIP2Q9NV92 336 aa8.98□□□□□ -0.97
USP47-211ENST00000531513 GDF2Q9UK05 429 aaPredicted RBP8.98□□□□□ -0.97
USP47-211ENST00000531513 FGFR3P22607 806 aa8.97□□□□□ -0.97
USP47-211ENST00000531513 GOLGA6L1Q8N7Z2 621 aa8.97□□□□□ -0.97
USP47-211ENST00000531513 GDPD2Q9HCC8 539 aa8.97□□□□□ -0.97
USP47-211ENST00000531513 BNIP3LO60238 219 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 GDF10P55107 478 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 TBC1D9Q6ZT07 1266 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 EDARADDQ8WWZ3 215 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 SIRT1Q96EB6 747 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 RRAGCQ9HB90 399 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 MKL2Q9ULH7 1088 aa8.96□□□□□ -0.98
USP47-211ENST00000531513 INHAP05111 366 aa8.95□□□□□ -0.98
USP47-211ENST00000531513 ATP4AP20648 1035 aa8.95□□□□□ -0.98
USP47-211ENST00000531513 ABL2P42684 1182 aa8.95□□□□□ -0.98
USP47-211ENST00000531513 CTBSQ01459 385 aa8.95□□□□□ -0.98
USP47-211ENST00000531513 SLCO4C1Q6ZQN7 724 aa8.95□□□□□ -0.98
USP47-211ENST00000531513 DNAAF2Q9NVR5 837 aaKnown RBP8.95□□□□□ -0.98
USP47-211ENST00000531513 PLPP7Q8NBV4 271 aa8.94□□□□□ -0.98
USP47-211ENST00000531513 GGA1Q9UJY5 639 aa8.94□□□□□ -0.98
USP47-211ENST00000531513 KRBA1A5PL33 1030 aa8.93□□□□□ -0.98
USP47-211ENST00000531513 HOXB4P17483 251 aaPredicted RBP8.93□□□□□ -0.98
USP47-211ENST00000531513 COL8A1P27658 744 aa8.93□□□□□ -0.98
USP47-211ENST00000531513 AMPD1P23109 780 aa8.92□□□□□ -0.98
USP47-211ENST00000531513 SMTNP53814 917 aa8.92□□□□□ -0.98
USP47-211ENST00000531513 FIGNL1Q6PIW4 674 aa8.92□□□□□ -0.98
USP47-211ENST00000531513 NIFKQ9BYG3 293 aaKnown RBP8.92□□□□□ -0.98
USP47-211ENST00000531513 MAP7D1Q3KQU3 841 aa8.91□□□□□ -0.98
USP47-211ENST00000531513 C1orf216Q8TAB5 229 aa8.91□□□□□ -0.98
USP47-211ENST00000531513 ZCCHC2Q9C0B9 1178 aaKnown RBP8.91□□□□□ -0.98
USP47-211ENST00000531513 SERTAD1Q9UHV2 236 aa8.91□□□□□ -0.98
USP47-211ENST00000531513 ARAFP10398 606 aa8.9□□□□□ -0.98
USP47-211ENST00000531513 WASHC4Q2M389 1173 aa8.9□□□□□ -0.98
USP47-211ENST00000531513 LINC00114Q6XXX2 140 aa8.9□□□□□ -0.98
USP47-211ENST00000531513 ZNF295-AS1Q8N0V1 137 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms