RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 ASXL1Q8IXJ9 1541 aa7.47□□□□□ -1.21
PCF11-205ENST00000530906 ADGRB1O14514 1584 aa7.46□□□□□ -1.21
PCF11-205ENST00000530906 IRF6O14896 467 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 PDE3BQ13370 1112 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 CCDC184Q52MB2 194 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 DACH1Q9UI36 760 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 SIGLEC1Q9BZZ2 1709 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 NEXMIFQ5QGS0 1516 aa7.46□□□□□ -1.22
PCF11-205ENST00000530906 RAPGEF3O95398 923 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 Q3C1V9 767 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 CYB5RLQ6IPT4 315 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 GGT6Q6P531 493 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 CYP4X1Q8N118 509 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 C14orf93Q9H972 538 aaKnown RBP7.45□□□□□ -1.22
PCF11-205ENST00000530906 KNSTRNQ9Y448 316 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 ARHGEF40Q8TER5 1519 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 USP32Q8NFA0 1604 aa7.45□□□□□ -1.22
PCF11-205ENST00000530906 YEATS2Q9ULM3 1422 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 ERVK-7P63135 1459 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 KDM4AO75164 1064 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 LCE2AQ5TA79 106 aaPredicted RBP7.44□□□□□ -1.22
PCF11-205ENST00000530906 PANK3Q9H999 370 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 ADGRF5Q8IZF2 1346 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 CENPJQ9HC77 1338 aaPredicted RBP7.44□□□□□ -1.22
PCF11-205ENST00000530906 TMEM131LA2VDJ0 1609 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 NINLQ9Y2I6 1382 aa7.44□□□□□ -1.22
PCF11-205ENST00000530906 BLMP54132 1417 aaPredicted RBP7.44□□□□□ -1.22
PCF11-205ENST00000530906 WNT7AO00755 349 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 ZBTB24O43167 697 aaPredicted RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 DXOO77932 396 aaKnown RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 SMCPP49901 116 aaPredicted RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 MDM2Q00987 491 aaPredicted RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 FAM69CQ0P6D2 419 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 NGEFQ8N5V2 710 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 HLA-CQ95604 372 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 USB1Q9BQ65 265 aaKnown RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 NUDCQ9Y266 331 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 QRICH2Q9H0J4 1663 aa7.43□□□□□ -1.22
PCF11-205ENST00000530906 MINK1Q8N4C8 1332 aaPredicted RBP7.43□□□□□ -1.22
PCF11-205ENST00000530906 SPATA31D1Q6ZQQ2 1576 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 USP46P62068 366 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 TRIM32Q13049 653 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 CTC1Q2NKJ3 1217 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 CFAP70Q5T0N1 1121 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 RNF123Q5XPI4 1314 aa7.42□□□□□ -1.22
PCF11-205ENST00000530906 ARHGEF28Q8N1W1 1705 aaKnown RBP7.41□□□□□ -1.22
PCF11-205ENST00000530906 KIF13AQ9H1H9 1805 aa7.41□□□□□ -1.22
PCF11-205ENST00000530906 AXIN1O15169 862 aa7.41□□□□□ -1.22
PCF11-205ENST00000530906 SMPD1P17405 629 aa7.41□□□□□ -1.22
PCF11-205ENST00000530906 NSD2O96028 1365 aa7.41□□□□□ -1.22
PCF11-205ENST00000530906 TTC24A2A3L6 582 aaPredicted RBP7.4□□□□□ -1.22
PCF11-205ENST00000530906 HOXA2O43364 376 aa7.4□□□□□ -1.22
PCF11-205ENST00000530906 TREML4Q6UXN2 200 aa7.4□□□□□ -1.22
PCF11-205ENST00000530906 SNIP1Q8TAD8 396 aaKnown RBP7.4□□□□□ -1.22
PCF11-205ENST00000530906 CCDC102AQ96A19 550 aa7.4□□□□□ -1.22
PCF11-205ENST00000530906 PPP4R2Q9NY27 417 aa7.4□□□□□ -1.22
PCF11-205ENST00000530906 GMPR2Q9P2T1 348 aaKnown RBP7.4□□□□□ -1.22
PCF11-205ENST00000530906 CFAP65Q6ZU64 1925 aaKnown RBP7.4□□□□□ -1.23
PCF11-205ENST00000530906 DLC1Q96QB1 1528 aa7.39□□□□□ -1.23
PCF11-205ENST00000530906 EVC2Q86UK5 1308 aa7.39□□□□□ -1.23
PCF11-205ENST00000530906 MRGPRX2Q96LB1 330 aa7.39□□□□□ -1.23
PCF11-205ENST00000530906 TSPOAP1O95153 1857 aa7.38□□□□□ -1.23
PCF11-205ENST00000530906 CLTCQ00610 1675 aaKnown RBP7.38□□□□□ -1.23
PCF11-205ENST00000530906 GUCA2AQ02747 115 aa7.38□□□□□ -1.23
PCF11-205ENST00000530906 IDI1Q13907 227 aa7.38□□□□□ -1.23
PCF11-205ENST00000530906 FAM217BQ9NTX9 383 aaPredicted RBP7.38□□□□□ -1.23
PCF11-205ENST00000530906 ATAD2Q6PL18 1390 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 MYO5BQ9ULV0 1848 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 J3QL48 77 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 PPP2R1AP30153 589 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 SKOR1P84550 965 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 CC2D1BQ5T0F9 858 aaKnown RBP7.37□□□□□ -1.23
PCF11-205ENST00000530906 VSIG10Q8N0Z9 540 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 GPCPD1Q9NPB8 672 aa7.37□□□□□ -1.23
PCF11-205ENST00000530906 POLR3AO14802 1390 aaPredicted RBP7.36□□□□□ -1.23
PCF11-205ENST00000530906 ANKRD36BQ8N2N9 1353 aa7.36□□□□□ -1.23
PCF11-205ENST00000530906 TULP1O00294 542 aaPredicted RBP7.36□□□□□ -1.23
PCF11-205ENST00000530906 WDR43Q15061 677 aaKnown RBP eCLIP7.36□□□□□ -1.23
PCF11-205ENST00000530906 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.36□□□□□ -1.23
PCF11-205ENST00000530906 SYMPKQ92797 1274 aaKnown RBP7.36□□□□□ -1.23
PCF11-205ENST00000530906 TULP4Q9NRJ4 1543 aa7.36□□□□□ -1.23
PCF11-205ENST00000530906 MED14O60244 1454 aa7.36□□□□□ -1.23
PCF11-205ENST00000530906 ALKQ9UM73 1620 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 CGNL1Q0VF96 1302 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 CLCN1P35523 988 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 CCDC24Q8N4L8 307 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 A2ML1A8K2U0 1454 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 PTPRMP28827 1452 aa7.35□□□□□ -1.23
PCF11-205ENST00000530906 YTHDC2Q9H6S0 1430 aaKnown RBP7.35□□□□□ -1.23
PCF11-205ENST00000530906 JUNDP17535 347 aa7.34□□□□□ -1.23
PCF11-205ENST00000530906 WNT7BP56706 349 aa7.34□□□□□ -1.23
PCF11-205ENST00000530906 RC3H1Q5TC82 1133 aaKnown RBP7.34□□□□□ -1.23
PCF11-205ENST00000530906 REPIN1Q9BWE0 567 aaKnown RBP7.34□□□□□ -1.23
PCF11-205ENST00000530906 TRAK1Q9UPV9 953 aa7.34□□□□□ -1.23
PCF11-205ENST00000530906 KNDC1Q76NI1 1749 aa7.34□□□□□ -1.23
PCF11-205ENST00000530906 SETD1AO15047 1707 aaKnown RBP7.33□□□□□ -1.24
PCF11-205ENST00000530906 ANKRD26Q9UPS8 1709 aa7.33□□□□□ -1.24
PCF11-205ENST00000530906 NFX1Q12986 1120 aaKnown RBP7.33□□□□□ -1.24
PCF11-205ENST00000530906 HPS1Q92902 700 aa7.33□□□□□ -1.24
PCF11-205ENST00000530906 SIRT1Q96EB6 747 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms