RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 ST20-MTHFSA0A0A6YYL1 179 aa12.58□□□□□ -0.4
VPS11-203ENST00000529545 PHF14O94880 888 aa12.58□□□□□ -0.4
VPS11-203ENST00000529545 GGNBP2Q9H3C7 697 aa12.58□□□□□ -0.4
VPS11-203ENST00000529545 CEP350Q5VT06 3117 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 INSRP06213 1382 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.57□□□□□ -0.4
VPS11-203ENST00000529545 FYB1O15117 783 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 SSFA2P28290 1259 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 TESK2Q96S53 571 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 WWC3Q9ULE0 1092 aa12.57□□□□□ -0.4
VPS11-203ENST00000529545 FLT4P35916 1363 aa12.56□□□□□ -0.4
VPS11-203ENST00000529545 KIF24Q5T7B8 1368 aa12.56□□□□□ -0.4
VPS11-203ENST00000529545 ITGB4P16144 1822 aa12.56□□□□□ -0.4
VPS11-203ENST00000529545 CYP27B1O15528 508 aa12.56□□□□□ -0.4
VPS11-203ENST00000529545 HSP90AB2PQ58FF8 381 aa12.56□□□□□ -0.4
VPS11-203ENST00000529545 SP7Q8TDD2 431 aaPredicted RBP12.56□□□□□ -0.4
VPS11-203ENST00000529545 SPG7Q9UQ90 795 aa12.55□□□□□ -0.4
VPS11-203ENST00000529545 UBR3Q6ZT12 1888 aa12.55□□□□□ -0.4
VPS11-203ENST00000529545 APLP1P51693 650 aa12.54□□□□□ -0.4
VPS11-203ENST00000529545 TMF1P82094 1093 aa12.54□□□□□ -0.4
VPS11-203ENST00000529545 PIGBQ92521 554 aa12.54□□□□□ -0.4
VPS11-203ENST00000529545 LOC102724428A0A0B4J2F2 783 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 GNPATO15228 680 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 SIK1P57059 783 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 CDCA8Q53HL2 280 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 TMOD3Q9NYL9 352 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 KIF20BQ96Q89 1820 aa12.53□□□□□ -0.4
VPS11-203ENST00000529545 TOGARAM1Q9Y4F4 1720 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 KIF3CO14782 793 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 PPM1GO15355 546 aaPredicted RBP12.52□□□□□ -0.41
VPS11-203ENST00000529545 ATP6V1AP38606 617 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 NKX1-1Q15270 411 aaPredicted RBP12.52□□□□□ -0.41
VPS11-203ENST00000529545 SMIM5Q71RC9 77 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 AMIGO3Q86WK7 504 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 LINC00116Q8NCU8 138 aa12.52□□□□□ -0.41
VPS11-203ENST00000529545 PKD1L3Q7Z443 1732 aa12.51□□□□□ -0.41
VPS11-203ENST00000529545 TOMM70O94826 608 aa12.51□□□□□ -0.41
VPS11-203ENST00000529545 MMP10P09238 476 aa12.51□□□□□ -0.41
VPS11-203ENST00000529545 TGFB2P61812 414 aa12.51□□□□□ -0.41
VPS11-203ENST00000529545 FKBP8Q14318 412 aa12.51□□□□□ -0.41
VPS11-203ENST00000529545 FARP1Q9Y4F1 1045 aaPredicted RBP12.51□□□□□ -0.41
VPS11-203ENST00000529545 C19orf67A6NJJ6 358 aa12.5□□□□□ -0.41
VPS11-203ENST00000529545 NLGN1Q8N2Q7 840 aa12.5□□□□□ -0.41
VPS11-203ENST00000529545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS11-203ENST00000529545 BCS1LQ9Y276 419 aa12.5□□□□□ -0.41
VPS11-203ENST00000529545 MAP2P11137 1827 aaKnown RBP12.49□□□□□ -0.41
VPS11-203ENST00000529545 CICQ96RK0 1608 aaPredicted RBP12.49□□□□□ -0.41
VPS11-203ENST00000529545 TRAPPC3LQ5T215 181 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 ARHGAP27Q6ZUM4 889 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 IFNL2Q8IZJ0 200 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 CREBZFQ9NS37 354 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 ASAP1Q9ULH1 1129 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 RTCBQ9Y3I0 505 aaKnown RBP12.49□□□□□ -0.41
VPS11-203ENST00000529545 EMILIN1Q9Y6C2 1016 aa12.49□□□□□ -0.41
VPS11-203ENST00000529545 ITPK1Q13572 414 aa12.48□□□□□ -0.41
VPS11-203ENST00000529545 CCDC87Q9NVE4 849 aa12.48□□□□□ -0.41
VPS11-203ENST00000529545 A0A0G2JLW4 131 aa12.47□□□□□ -0.41
VPS11-203ENST00000529545 C16orf71Q8IYS4 520 aaPredicted RBP12.47□□□□□ -0.41
VPS11-203ENST00000529545 PXDNLA1KZ92 1463 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 KIF13BQ9NQT8 1826 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 N4BP2Q86UW6 1770 aaPredicted RBP12.46□□□□□ -0.41
VPS11-203ENST00000529545 FCHSD2O94868 740 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 PHKG2P15735 406 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 EYA1Q99502 592 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 ATG3Q9NT62 314 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 PARP3Q9Y6F1 533 aa12.46□□□□□ -0.41
VPS11-203ENST00000529545 NCAPD2Q15021 1401 aa12.45□□□□□ -0.42
VPS11-203ENST00000529545 WASHC2AQ641Q2 1341 aa12.45□□□□□ -0.42
VPS11-203ENST00000529545 RFC4P35249 363 aa12.45□□□□□ -0.42
VPS11-203ENST00000529545 HSP90AB1P08238 724 aaKnown RBP12.44□□□□□ -0.42
VPS11-203ENST00000529545 DPEP1P16444 411 aa12.44□□□□□ -0.42
VPS11-203ENST00000529545 RC3H1Q5TC82 1133 aaKnown RBP12.44□□□□□ -0.42
VPS11-203ENST00000529545 DNAJC5GQ8N7S2 189 aa12.44□□□□□ -0.42
VPS11-203ENST00000529545 RBM46Q8TBY0 533 aaKnown RBP12.44□□□□□ -0.42
VPS11-203ENST00000529545 NMRK2Q9NPI5 230 aa12.44□□□□□ -0.42
VPS11-203ENST00000529545 C10orf71Q711Q0 1435 aa12.44□□□□□ -0.42
VPS11-203ENST00000529545 ERVV-2B6SEH9 535 aa12.43□□□□□ -0.42
VPS11-203ENST00000529545 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
VPS11-203ENST00000529545 CARD14Q9BXL6 1004 aa12.43□□□□□ -0.42
VPS11-203ENST00000529545 PLEKHG2Q9H7P9 1386 aa12.43□□□□□ -0.42
VPS11-203ENST00000529545 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 KIAA1551Q9HCM1 1747 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 ANKRD26Q9UPS8 1709 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 KDM2BQ8NHM5 1336 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 RPS6KA4O75676 772 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 C9orf131Q5VYM1 1079 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 PIM2Q9P1W9 311 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 WDR90Q96KV7 1748 aa12.42□□□□□ -0.42
VPS11-203ENST00000529545 CNTNAP4Q9C0A0 1308 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 GYS1P13807 737 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 FSTL1Q12841 308 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 DALRD3Q5D0E6 543 aaKnown RBP12.41□□□□□ -0.42
VPS11-203ENST00000529545 DCAF5Q96JK2 942 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 ZNF831Q5JPB2 1677 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 KDRP35968 1356 aa12.41□□□□□ -0.42
VPS11-203ENST00000529545 CABP4P57796 275 aa12.4□□□□□ -0.42
VPS11-203ENST00000529545 PLEKHO1Q53GL0 409 aaPredicted RBP12.4□□□□□ -0.42
VPS11-203ENST00000529545 KLRG1Q96E93 195 aa12.4□□□□□ -0.42
VPS11-203ENST00000529545 POLKQ9UBT6 870 aa12.4□□□□□ -0.42
VPS11-203ENST00000529545 ARFGEF1Q9Y6D6 1849 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms