RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	NWD1	Q149M9	1564 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865		F6X3S4	739 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	MCM2	P49736	904 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	ZNF445	P59923	1031 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	ANAPC15	P60006	121 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	FLII	Q13045	1269 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	TAF7	Q15545	349 aa	Predicted RBP	10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	NGDN	Q8NEJ9	315 aa	Known RBP	10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	IL17RE	Q8NFR9	667 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	SRCIN1	Q9C0H9	1055 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	FOXD4L1	Q9NU39	408 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	LMBRD1	Q9NUN5	540 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	NUTM2F	A1L443	756 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	HOXC9	P31274	260 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	PPP1R9B	Q96SB3	815 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	ESYT1	Q9BSJ8	1104 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	LRRCC1	Q9C099	1032 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	ZDHHC9	Q9Y397	364 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	PXDNL	A1KZ92	1463 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	RIMS1	Q86UR5	1692 aa	Known RBP	10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	FMN2	Q9NZ56	1722 aa		10.27	□□□□□ -0.77
CSTF3-208	ENST00000528865	RAB11FIP3	O75154	756 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	NLRP6	P59044	892 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	CUL4A	Q13619	759 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	SLC4A10	Q6U841	1118 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	SSH3	Q8TE77	659 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	CACNA1F	O60840	1977 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	MAP3K5	Q99683	1374 aa		10.26	□□□□□ -0.77
CSTF3-208	ENST00000528865	PIK3C2A	O00443	1686 aa		10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	CHML	P26374	656 aa		10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	CEBPA	P49715	358 aa	Predicted RBP	10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	POLA2	Q14181	598 aa		10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	CHMP4A	Q9BY43	222 aa		10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	USP44	Q9H0E7	712 aa		10.25	□□□□□ -0.77
CSTF3-208	ENST00000528865	XRN1	Q8IZH2	1706 aa	Known RBP	10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	PNMA6E	A0A0J9YXQ4	647 aa		10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	HOXB7	P09629	217 aa		10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	MX1	P20591	662 aa		10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	CCDC173	Q0VFZ6	552 aa		10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	INTS4	Q96HW7	963 aa	Known RBP	10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	DDX49	Q9Y6V7	483 aa	Known RBP	10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	CEMIP	Q8WUJ3	1361 aa		10.24	□□□□□ -0.77
CSTF3-208	ENST00000528865	ESPN	B1AK53	854 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	APBB1	O00213	710 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	SOX12	O15370	315 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	PLEKHG5	O94827	1062 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	MCC	P23508	829 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	FKBP5	Q13451	457 aa	Predicted RBP	10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	ZGPAT	Q8N5A5	531 aa	Known RBP	10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	IP6K1	Q92551	441 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	EXOC6B	Q9Y2D4	811 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	MARF1	Q9Y4F3	1742 aa	Known RBP	10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	TUBGCP6	Q96RT7	1819 aa		10.23	□□□□□ -0.77
CSTF3-208	ENST00000528865	BRD1	O95696	1058 aa		10.22	□□□□□ -0.77
CSTF3-208	ENST00000528865	MCTP1	Q6DN14	999 aa		10.22	□□□□□ -0.77
CSTF3-208	ENST00000528865	TMX3	Q96JJ7	454 aa		10.22	□□□□□ -0.77
CSTF3-208	ENST00000528865	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.22	□□□□□ -0.77
CSTF3-208	ENST00000528865	LRRFIP2	Q9Y608	721 aa	Known RBP	10.22	□□□□□ -0.77
CSTF3-208	ENST00000528865	UBTFL1	P0CB47	393 aa	Predicted RBP	10.21	□□□□□ -0.77
CSTF3-208	ENST00000528865	NEK4	P51957	841 aa		10.21	□□□□□ -0.77
CSTF3-208	ENST00000528865	EIF4A1	P60842	406 aa	Known RBP	10.21	□□□□□ -0.77
CSTF3-208	ENST00000528865	PKP1	Q13835	747 aa		10.21	□□□□□ -0.77
CSTF3-208	ENST00000528865	HS1BP3	Q53T59	392 aa		10.21	□□□□□ -0.77
CSTF3-208	ENST00000528865	USP42	Q9H9J4	1324 aa	Known RBP	10.21	□□□□□ -0.78
CSTF3-208	ENST00000528865	FAM208A	Q9UK61	1670 aa	Known RBP	10.21	□□□□□ -0.78
CSTF3-208	ENST00000528865	RGPD8	O14715	1765 aa	Predicted RBP	10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	KCNA6	P17658	529 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	HSPA4	P34932	840 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	NASP	P49321	788 aa	Predicted RBP	10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	MED1	Q15648	1581 aa	Predicted RBP	10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	ZSCAN23	Q3MJ62	389 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	ABTB2	Q8N961	1025 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	GPT2	Q8TD30	523 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	ARX	Q96QS3	562 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	ADGRL3	Q9HAR2	1447 aa		10.2	□□□□□ -0.78
CSTF3-208	ENST00000528865	ERBB4	Q15303	1308 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PRPF40A	O75400	957 aa	Known RBP	10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	MBD3	O95983	291 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	BEND3	Q5T5X7	828 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	HDGFL1	Q5TGJ6	251 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PPP1R42	Q7Z4L9	355 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PI4K2B	Q8TCG2	481 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	RHPN1	Q8TCX5	695 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	TRIM44	Q96DX7	344 aa	Predicted RBP	10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PDLIM2	Q96JY6	352 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PALD1	Q9ULE6	856 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	PHF8	Q9UPP1	1060 aa		10.19	□□□□□ -0.78
CSTF3-208	ENST00000528865	MTX1	Q13505	466 aa		10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	HSP90AB4P	Q58FF6	505 aa		10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	CAVIN1	Q6NZI2	390 aa	Known RBP	10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	UNC5CL	Q8IV45	518 aa		10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	KIF1BP	Q96EK5	621 aa		10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	RBSN	Q9H1K0	784 aa		10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	PHAX	Q9H814	394 aa	Known RBP	10.18	□□□□□ -0.78
CSTF3-208	ENST00000528865	NCAPD2	Q15021	1401 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	TRIM6-TRIM34	B2RNG4	842 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	SGSM2	O43147	1006 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	SURF6	O75683	361 aa	Known RBP	10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 2461.4 ms