RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 AGBL1Q96MI9 1066 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 RAB6BQ9NRW1 208 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 TTLL8A6PVC2 850 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 SOBPA7XYQ1 873 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L15C9J2P7 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L10C9JJH3 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L13C9JLJ4 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L12C9JPN9 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L11C9JVI0 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L21D6R901 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L18D6R9N7 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L22D6RA61 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L17D6RBQ6 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L19D6RCP7 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L20D6RJB6 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 RASA1P20936 1047 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 FAM69CQ0P6D2 419 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 USP17L24Q0WX57 530 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 DPYDQ12882 1025 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 PTK7Q13308 1070 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.75□□□□□ -1.49
CD44-229ENST00000528672 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-229ENST00000528672 OSBPL3Q9H4L5 887 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 ESF1Q9H501 851 aaKnown RBP5.75□□□□□ -1.49
CD44-229ENST00000528672 VRTNQ9H8Y1 702 aa5.75□□□□□ -1.49
CD44-229ENST00000528672 NOVA2Q9UNW9 492 aaKnown RBP5.75□□□□□ -1.49
CD44-229ENST00000528672 WASLO00401 505 aaPredicted RBP5.74□□□□□ -1.49
CD44-229ENST00000528672 CLN3Q13286 438 aa5.74□□□□□ -1.49
CD44-229ENST00000528672 TBCELQ5QJ74 424 aa5.74□□□□□ -1.49
CD44-229ENST00000528672 PHLDB3Q6NSJ2 640 aa5.74□□□□□ -1.49
CD44-229ENST00000528672 PLEKHM2Q8IWE5 1019 aa5.74□□□□□ -1.49
CD44-229ENST00000528672 USP3Q9Y6I4 520 aa5.74□□□□□ -1.49
CD44-229ENST00000528672 MAN1A2O60476 641 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 RNF144AP50876 292 aaPredicted RBP5.73□□□□□ -1.49
CD44-229ENST00000528672 GTF2IP78347 998 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 ESCO1Q5FWF5 840 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 WDR44Q5JSH3 913 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 AEBP1Q8IUX7 1158 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 TMEM151AQ8N4L1 468 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 TPCN2Q8NHX9 752 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 PRIMPOLQ96LW4 560 aa5.73□□□□□ -1.49
CD44-229ENST00000528672 CCDC9Q9Y3X0 531 aaKnown RBP5.73□□□□□ -1.49
CD44-229ENST00000528672 TMEM229AB2RXF0 380 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 PPFIA3O75145 1194 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 ATG7O95352 703 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 RELBQ01201 579 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 RASSF7Q02833 373 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 C6orf118Q5T5N4 469 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 TSEN2Q8NCE0 465 aaKnown RBP5.72□□□□□ -1.49
CD44-229ENST00000528672 RNF217Q8TC41 542 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 SERTAD1Q9UHV2 236 aa5.72□□□□□ -1.49
CD44-229ENST00000528672 GDF11O95390 407 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 SCNN1DP51172 638 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 EML3Q32P44 896 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 KLRG1Q96E93 195 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 TRAIPQ9BWF2 469 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 ZNF395Q9H8N7 513 aaPredicted RBP5.71□□□□□ -1.5
CD44-229ENST00000528672 ETNK1Q9HBU6 452 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 DNAAF2Q9NVR5 837 aaKnown RBP5.71□□□□□ -1.5
CD44-229ENST00000528672 DNMT3LQ9UJW3 386 aa5.71□□□□□ -1.5
CD44-229ENST00000528672 PRMT3O60678 531 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 PSME1Q06323 249 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 FOXD4L5Q5VV16 416 aaPredicted RBP5.7□□□□□ -1.5
CD44-229ENST00000528672 CCDC102BQ68D86 513 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 ANKMY2Q8IV38 441 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 TNS4Q8IZW8 715 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 INSM2Q96T92 566 aaPredicted RBP5.7□□□□□ -1.5
CD44-229ENST00000528672 ESYT1Q9BSJ8 1104 aa5.7□□□□□ -1.5
CD44-229ENST00000528672 A0A1W2PRU2 124 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 SPATA31C2B4DYI2 1134 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 CTSOP43234 321 aaPredicted RBP5.69□□□□□ -1.5
CD44-229ENST00000528672 SH3PXD2AQ5TCZ1 1133 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 TRIM50Q86XT4 487 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 XAGE2Q96GT9 111 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 NLRP3Q96P20 1036 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 ARHGEF10LQ9HCE6 1279 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 POLMQ9NP87 494 aaPredicted RBP5.69□□□□□ -1.5
CD44-229ENST00000528672 ZNF358Q9NW07 568 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 ADAMTS8Q9UP79 889 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 NOD1Q9Y239 953 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 HRH3Q9Y5N1 445 aa5.69□□□□□ -1.5
CD44-229ENST00000528672 PPP1R15AO75807 674 aaPredicted RBP5.68□□□□□ -1.5
CD44-229ENST00000528672 IL2RAP01589 272 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 ATP1A2P50993 1020 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 LYSMD3Q7Z3D4 306 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 GMCL1Q96IK5 515 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 MKNK1Q9BUB5 465 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 GRIP2Q9C0E4 1043 aa5.68□□□□□ -1.5
CD44-229ENST00000528672 FAM196BA6NMK8 535 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 RNF225M0QZC1 329 aaPredicted RBP5.67□□□□□ -1.5
CD44-229ENST00000528672 CSB-PGBD3P0DP91 1061 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 KRT76Q01546 638 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 LARP1Q6PKG0 1096 aaKnown RBP5.67□□□□□ -1.5
CD44-229ENST00000528672 FAM200AQ8TCP9 573 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 CNKSR1Q969H4 720 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 PARP3Q9Y6F1 533 aa5.67□□□□□ -1.5
CD44-229ENST00000528672 ACIN1Q9UKV3 1341 aaKnown RBP5.67□□□□□ -1.5
CD44-229ENST00000528672 INHAP05111 366 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 GDF10P55107 478 aa5.66□□□□□ -1.5
CD44-229ENST00000528672 PTSQ03393 145 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms