RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 G2E3Q7L622 706 aa26.19■■□□□ 1.78
VPS28-209ENST00000528142 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.19■■□□□ 1.78
VPS28-209ENST00000528142 TATP17735 454 aaPredicted RBP26.18■■□□□ 1.78
VPS28-209ENST00000528142 MEGF6O75095 1541 aa26.18■■□□□ 1.78
VPS28-209ENST00000528142 STK31Q9BXU1 1019 aa26.18■■□□□ 1.78
VPS28-209ENST00000528142 SMC5Q8IY18 1101 aa26.17■■□□□ 1.78
VPS28-209ENST00000528142 PRDM11Q9NQV5 511 aa26.17■■□□□ 1.78
VPS28-209ENST00000528142 ADAMTS7Q9UKP4 1686 aa26.16■■□□□ 1.78
VPS28-209ENST00000528142 BTBD11A6QL63 1104 aa26.16■■□□□ 1.78
VPS28-209ENST00000528142 KDM3BQ7LBC6 1761 aa26.16■■□□□ 1.78
VPS28-209ENST00000528142 KCNQ3O43525 872 aa26.15■■□□□ 1.78
VPS28-209ENST00000528142 HOXB7P09629 217 aa26.15■■□□□ 1.78
VPS28-209ENST00000528142 SPG7Q9UQ90 795 aa26.15■■□□□ 1.78
VPS28-209ENST00000528142 FAM161AQ3B820 660 aa26.13■■□□□ 1.77
VPS28-209ENST00000528142 WDR17Q8IZU2 1322 aa26.12■■□□□ 1.77
VPS28-209ENST00000528142 PHKG2P15735 406 aa26.12■■□□□ 1.77
VPS28-209ENST00000528142 C8orf34Q49A92 452 aa26.12■■□□□ 1.77
VPS28-209ENST00000528142 C1orf115Q9H7X2 142 aa26.12■■□□□ 1.77
VPS28-209ENST00000528142 FLIIQ13045 1269 aa26.11■■□□□ 1.77
VPS28-209ENST00000528142 HDGFL1Q5TGJ6 251 aa26.11■■□□□ 1.77
VPS28-209ENST00000528142 NECTIN2Q92692 538 aa26.11■■□□□ 1.77
VPS28-209ENST00000528142 SIRT2Q8IXJ6 389 aa26.11■■□□□ 1.77
VPS28-209ENST00000528142 KDM6AO15550 1401 aaPredicted RBP26.1■■□□□ 1.77
VPS28-209ENST00000528142 COL5A2P05997 1499 aaPredicted RBP26.09■■□□□ 1.77
VPS28-209ENST00000528142 HEG1Q9ULI3 1381 aa26.09■■□□□ 1.77
VPS28-209ENST00000528142 IFNL2Q8IZJ0 200 aa26.09■■□□□ 1.77
VPS28-209ENST00000528142 F6X3S4 739 aa26.08■■□□□ 1.77
VPS28-209ENST00000528142 CCT4P50991 539 aaKnown RBP26.07■■□□□ 1.76
VPS28-209ENST00000528142 CHMP4AQ9BY43 222 aa26.07■■□□□ 1.76
VPS28-209ENST00000528142 CYP27B1O15528 508 aa26.07■■□□□ 1.76
VPS28-209ENST00000528142 SIPA1L3O60292 1781 aaPredicted RBP26.07■■□□□ 1.76
VPS28-209ENST00000528142 NUCB1Q02818 461 aa26.05■■□□□ 1.76
VPS28-209ENST00000528142 TOM1L2Q6ZVM7 507 aa26.05■■□□□ 1.76
VPS28-209ENST00000528142 SLC52A2Q9HAB3 445 aa26.05■■□□□ 1.76
VPS28-209ENST00000528142 PKD1L3Q7Z443 1732 aa26.05■■□□□ 1.76
VPS28-209ENST00000528142 VIRMAQ69YN4 1812 aaKnown RBP26.05■■□□□ 1.76
VPS28-209ENST00000528142 FKBP5Q13451 457 aaPredicted RBP26.04■■□□□ 1.76
VPS28-209ENST00000528142 GCC1Q96CN9 775 aa26.04■■□□□ 1.76
VPS28-209ENST00000528142 GIGYF1O75420 1035 aaPredicted RBP26.04■■□□□ 1.76
VPS28-209ENST00000528142 EIF2S2P20042 333 aaKnown RBP26.04■■□□□ 1.76
VPS28-209ENST00000528142 MEIS3Q99687 375 aa26.04■■□□□ 1.76
VPS28-209ENST00000528142 SLC4A10Q6U841 1118 aa26.03■■□□□ 1.76
VPS28-209ENST00000528142 DCAF5Q96JK2 942 aa26.03■■□□□ 1.76
VPS28-209ENST00000528142 CARD10Q9BWT7 1032 aa26.03■■□□□ 1.76
VPS28-209ENST00000528142 ATP10DQ9P241 1426 aa26.02■■□□□ 1.76
VPS28-209ENST00000528142 COL14A1Q05707 1796 aaKnown RBP26.02■■□□□ 1.76
VPS28-209ENST00000528142 CACNA1FO60840 1977 aa26.02■■□□□ 1.76
VPS28-209ENST00000528142 PHAXQ9H814 394 aaKnown RBP26.02■■□□□ 1.76
VPS28-209ENST00000528142 SCN11AQ9UI33 1791 aa26.02■■□□□ 1.76
VPS28-209ENST00000528142 ANKRD44Q8N8A2 993 aa26.01■■□□□ 1.75
VPS28-209ENST00000528142 CHPF2Q9P2E5 772 aa26.01■■□□□ 1.75
VPS28-209ENST00000528142 MRC1P22897 1456 aa26■■□□□ 1.75
VPS28-209ENST00000528142 MSH5O43196 834 aa26■■□□□ 1.75
VPS28-209ENST00000528142 HSP90AB1P08238 724 aaKnown RBP26■■□□□ 1.75
VPS28-209ENST00000528142 RPAP2Q8IXW5 612 aaPredicted RBP26■■□□□ 1.75
VPS28-209ENST00000528142 ADAMTS2O95450 1211 aa26■■□□□ 1.75
VPS28-209ENST00000528142 ANP32AP39687 249 aaKnown RBP26■■□□□ 1.75
VPS28-209ENST00000528142 LARP1Q6PKG0 1096 aaKnown RBP26■■□□□ 1.75
VPS28-209ENST00000528142 NFATC2IPQ8NCF5 419 aa26■■□□□ 1.75
VPS28-209ENST00000528142 BTG4Q9NY30 223 aa26■■□□□ 1.75
VPS28-209ENST00000528142 NUTM2BA6NNL0 878 aaPredicted RBP25.99■■□□□ 1.75
VPS28-209ENST00000528142 NUTM2EB1AL46 878 aaPredicted RBP25.99■■□□□ 1.75
VPS28-209ENST00000528142 CEP85Q6P2H3 762 aa25.99■■□□□ 1.75
VPS28-209ENST00000528142 ZNF790Q6PG37 636 aa25.99■■□□□ 1.75
VPS28-209ENST00000528142 CHD1LQ86WJ1 897 aa25.99■■□□□ 1.75
VPS28-209ENST00000528142 NUTM2AQ8IVF1 878 aaPredicted RBP25.99■■□□□ 1.75
VPS28-209ENST00000528142 PXDNLA1KZ92 1463 aa25.99■■□□□ 1.75
VPS28-209ENST00000528142 STRN4Q9NRL3 753 aa25.98■■□□□ 1.75
VPS28-209ENST00000528142 HSPA1LP34931 641 aa25.98■■□□□ 1.75
VPS28-209ENST00000528142 ZCRB1Q8TBF4 217 aaKnown RBP25.97■■□□□ 1.75
VPS28-209ENST00000528142 DBF4Q9UBU7 674 aaPredicted RBP25.97■■□□□ 1.75
VPS28-209ENST00000528142 PLCH1Q4KWH8 1693 aa25.96■■□□□ 1.75
VPS28-209ENST00000528142 EVA1CP58658 441 aa25.96■■□□□ 1.75
VPS28-209ENST00000528142 SLC39A6Q13433 755 aa25.96■■□□□ 1.75
VPS28-209ENST00000528142 DCTPP1Q9H773 170 aa25.96■■□□□ 1.75
VPS28-209ENST00000528142 PARP4Q9UKK3 1724 aaKnown RBP25.96■■□□□ 1.75
VPS28-209ENST00000528142 JCADQ9P266 1359 aa25.96■■□□□ 1.75
VPS28-209ENST00000528142 PRAMEF22A3QJZ6 481 aa25.95■■□□□ 1.75
VPS28-209ENST00000528142 IL2RBP14784 551 aa25.95■■□□□ 1.75
VPS28-209ENST00000528142 PCDH11XQ9BZA7 1347 aa25.95■■□□□ 1.74
VPS28-209ENST00000528142 PCDH11YQ9BZA8 1340 aa25.95■■□□□ 1.74
VPS28-209ENST00000528142 LNPKQ9C0E8 428 aa25.95■■□□□ 1.74
VPS28-209ENST00000528142 ANKRD45Q5TZF3 282 aa25.94■■□□□ 1.74
VPS28-209ENST00000528142 NPM2Q86SE8 214 aaKnown RBP25.93■■□□□ 1.74
VPS28-209ENST00000528142 ANXA1P04083 346 aa25.92■■□□□ 1.74
VPS28-209ENST00000528142 GNAI3P08754 354 aa25.92■■□□□ 1.74
VPS28-209ENST00000528142 NKX1-1Q15270 411 aaPredicted RBP25.92■■□□□ 1.74
VPS28-209ENST00000528142 IPO9Q96P70 1041 aaKnown RBP25.91■■□□□ 1.74
VPS28-209ENST00000528142 NRAPQ86VF7 1730 aa25.91■■□□□ 1.74
VPS28-209ENST00000528142 N4BP2Q86UW6 1770 aaPredicted RBP25.91■■□□□ 1.74
VPS28-209ENST00000528142 LRP6O75581 1613 aa25.91■■□□□ 1.74
VPS28-209ENST00000528142 GNAI2P04899 355 aa25.91■■□□□ 1.74
VPS28-209ENST00000528142 CABP4P57796 275 aa25.91■■□□□ 1.74
VPS28-209ENST00000528142 PROSER3Q2NL68 480 aa25.91■■□□□ 1.74
VPS28-209ENST00000528142 ZNF496Q96IT1 587 aaPredicted RBP25.9■■□□□ 1.74
VPS28-209ENST00000528142 USP44Q9H0E7 712 aa25.9■■□□□ 1.74
VPS28-209ENST00000528142 ADCY9O60503 1353 aa25.89■■□□□ 1.73
VPS28-209ENST00000528142 PI4KAP2A4QPH2 592 aa25.88■■□□□ 1.73
VPS28-209ENST00000528142 PDIA6Q15084 440 aa25.88■■□□□ 1.73
VPS28-209ENST00000528142 PI4KAP1Q8N8J0 262 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms