RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 TONSLQ96HA7 1378 aa22.9■■□□□ 1.26
CHMP4A-203ENST00000527154 GNPATO15228 680 aa22.9■■□□□ 1.26
CHMP4A-203ENST00000527154 ZNF831Q5JPB2 1677 aa22.9■■□□□ 1.26
CHMP4A-203ENST00000527154 PLEKHG2Q9H7P9 1386 aa22.89■■□□□ 1.26
CHMP4A-203ENST00000527154 N4BP2Q86UW6 1770 aaPredicted RBP22.89■■□□□ 1.26
CHMP4A-203ENST00000527154 FSTL1Q12841 308 aa22.89■■□□□ 1.25
CHMP4A-203ENST00000527154 BCS1LQ9Y276 419 aa22.89■■□□□ 1.25
CHMP4A-203ENST00000527154 ST20-MTHFSA0A0A6YYL1 179 aa22.88■■□□□ 1.25
CHMP4A-203ENST00000527154 KCNA3P22001 575 aa22.88■■□□□ 1.25
CHMP4A-203ENST00000527154 NLGN1Q8N2Q7 840 aa22.88■■□□□ 1.25
CHMP4A-203ENST00000527154 ASAP1Q9ULH1 1129 aa22.88■■□□□ 1.25
CHMP4A-203ENST00000527154 A0A0G2JLW4 131 aa22.87■■□□□ 1.25
CHMP4A-203ENST00000527154 C4AP0C0L4 1744 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 ARFGEF1Q9Y6D6 1849 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 ADRA2BP18089 450 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 ATP6V1AP38606 617 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 ATG3Q9NT62 314 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 SPG7Q9UQ90 795 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 ANKRD26Q9UPS8 1709 aa22.85■■□□□ 1.25
CHMP4A-203ENST00000527154 DPEP1P16444 411 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 TMF1P82094 1093 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 HTRA3P83110 453 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 ARHGAP27Q6ZUM4 889 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 SLC4A9Q96Q91 983 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 TMOD3Q9NYL9 352 aa22.84■■□□□ 1.25
CHMP4A-203ENST00000527154 GYS1P13807 737 aa22.83■■□□□ 1.25
CHMP4A-203ENST00000527154 RC3H1Q5TC82 1133 aaKnown RBP22.83■■□□□ 1.25
CHMP4A-203ENST00000527154 C9orf131Q5VYM1 1079 aa22.83■■□□□ 1.25
CHMP4A-203ENST00000527154 PRELPP51888 382 aa22.82■■□□□ 1.24
CHMP4A-203ENST00000527154 PHKG2P15735 406 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 TRAPPC3LQ5T215 181 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 ARHGEF1Q92888 912 aaKnown RBP22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 DCAF5Q96JK2 942 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 CCDC87Q9NVE4 849 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 RTCBQ9Y3I0 505 aaKnown RBP22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 EMILIN1Q9Y6C2 1016 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 CNTNAP4Q9C0A0 1308 aa22.81■■□□□ 1.24
CHMP4A-203ENST00000527154 KIF20BQ96Q89 1820 aa22.8■■□□□ 1.24
CHMP4A-203ENST00000527154 COL5A3P25940 1745 aaPredicted RBP22.8■■□□□ 1.24
CHMP4A-203ENST00000527154 FCHSD2O94868 740 aa22.8■■□□□ 1.24
CHMP4A-203ENST00000527154 KCPQ6ZWJ8 1503 aa22.8■■□□□ 1.24
CHMP4A-203ENST00000527154 WASHC2AQ641Q2 1341 aa22.8■■□□□ 1.24
CHMP4A-203ENST00000527154 IFNL2Q8IZJ0 200 aa22.79■■□□□ 1.24
CHMP4A-203ENST00000527154 EYA1Q99502 592 aa22.78■■□□□ 1.24
CHMP4A-203ENST00000527154 RPS6KA4O75676 772 aa22.77■■□□□ 1.24
CHMP4A-203ENST00000527154 TNRC6CQ9HCJ0 1690 aaKnown RBP22.77■■□□□ 1.24
CHMP4A-203ENST00000527154 KDM2BQ8NHM5 1336 aa22.77■■□□□ 1.24
CHMP4A-203ENST00000527154 KDM6AO15550 1401 aaPredicted RBP22.76■■□□□ 1.23
CHMP4A-203ENST00000527154 C16orf71Q8IYS4 520 aaPredicted RBP22.76■■□□□ 1.23
CHMP4A-203ENST00000527154 TNS4Q8IZW8 715 aa22.75■■□□□ 1.23
CHMP4A-203ENST00000527154 CARD14Q9BXL6 1004 aa22.75■■□□□ 1.23
CHMP4A-203ENST00000527154 PIM2Q9P1W9 311 aa22.75■■□□□ 1.23
CHMP4A-203ENST00000527154 PARP3Q9Y6F1 533 aa22.74■■□□□ 1.23
CHMP4A-203ENST00000527154 ZC3H4Q9UPT8 1303 aaKnown RBP22.74■■□□□ 1.23
CHMP4A-203ENST00000527154 MYH14Q7Z406 1995 aaKnown RBP22.74■■□□□ 1.23
CHMP4A-203ENST00000527154 ERVV-2B6SEH9 535 aa22.73■■□□□ 1.23
CHMP4A-203ENST00000527154 SBF1O95248 1867 aa22.73■■□□□ 1.23
CHMP4A-203ENST00000527154 SMC1BQ8NDV3 1235 aa22.72■■□□□ 1.23
CHMP4A-203ENST00000527154 DALRD3Q5D0E6 543 aaKnown RBP22.71■■□□□ 1.23
CHMP4A-203ENST00000527154 RRAGCQ9HB90 399 aa22.71■■□□□ 1.23
CHMP4A-203ENST00000527154 RFC4P35249 363 aa22.7■■□□□ 1.22
CHMP4A-203ENST00000527154 RNF181Q9P0P0 153 aa22.7■■□□□ 1.22
CHMP4A-203ENST00000527154 DDR1Q08345 913 aa22.69■■□□□ 1.22
CHMP4A-203ENST00000527154 ADAMTS7Q9UKP4 1686 aa22.68■■□□□ 1.22
CHMP4A-203ENST00000527154 USP42Q9H9J4 1324 aaKnown RBP22.68■■□□□ 1.22
CHMP4A-203ENST00000527154 CAPN15O75808 1086 aa22.66■■□□□ 1.22
CHMP4A-203ENST00000527154 POLKQ9UBT6 870 aa22.66■■□□□ 1.22
CHMP4A-203ENST00000527154 HSPA1AP0DMV8 641 aaKnown RBP22.65■■□□□ 1.22
CHMP4A-203ENST00000527154 HSPA1BP0DMV9 641 aaKnown RBP22.65■■□□□ 1.22
CHMP4A-203ENST00000527154 TM4SF1P30408 202 aa22.65■■□□□ 1.22
CHMP4A-203ENST00000527154 FKBP8Q14318 412 aa22.65■■□□□ 1.22
CHMP4A-203ENST00000527154 RBM42Q9BTD8 480 aaKnown RBP22.65■■□□□ 1.22
CHMP4A-203ENST00000527154 POLRMTO00411 1230 aaKnown RBP22.64■■□□□ 1.21
CHMP4A-203ENST00000527154 HSP90AB1P08238 724 aaKnown RBP22.64■■□□□ 1.21
CHMP4A-203ENST00000527154 CDCA8Q53HL2 280 aa22.64■■□□□ 1.21
CHMP4A-203ENST00000527154 EIF4A2Q14240 407 aaKnown RBP22.63■■□□□ 1.21
CHMP4A-203ENST00000527154 SRP68Q9UHB9 627 aaKnown RBP22.63■■□□□ 1.21
CHMP4A-203ENST00000527154 GLTPD2A6NH11 291 aa22.62■■□□□ 1.21
CHMP4A-203ENST00000527154 CHRNA5P30532 468 aa22.62■■□□□ 1.21
CHMP4A-203ENST00000527154 CRKLP46109 303 aaKnown RBP22.62■■□□□ 1.21
CHMP4A-203ENST00000527154 PPM1GO15355 546 aaPredicted RBP22.61■■□□□ 1.21
CHMP4A-203ENST00000527154 VEGFAP15692 232 aaPredicted RBP22.6■■□□□ 1.21
CHMP4A-203ENST00000527154 TJP1Q07157 1748 aa22.6■■□□□ 1.21
CHMP4A-203ENST00000527154 NRXN2Q9P2S2 1712 aa22.6■■□□□ 1.21
CHMP4A-203ENST00000527154 POTECB2RU33 542 aa22.58■■□□□ 1.21
CHMP4A-203ENST00000527154 LMNB1P20700 586 aa22.58■■□□□ 1.21
CHMP4A-203ENST00000527154 RASSF7Q02833 373 aa22.58■■□□□ 1.21
CHMP4A-203ENST00000527154 INTS5Q6P9B9 1019 aaKnown RBP22.58■■□□□ 1.21
CHMP4A-203ENST00000527154 DLEC1Q9Y238 1755 aa22.56■■□□□ 1.2
CHMP4A-203ENST00000527154 CABP4P57796 275 aa22.55■■□□□ 1.2
CHMP4A-203ENST00000527154 AMOTQ4VCS5 1084 aa22.54■■□□□ 1.2
CHMP4A-203ENST00000527154 PLEKHO1Q53GL0 409 aaPredicted RBP22.54■■□□□ 1.2
CHMP4A-203ENST00000527154 PTCD1O75127 700 aaKnown RBP22.53■■□□□ 1.2
CHMP4A-203ENST00000527154 SOS1Q07889 1333 aaPredicted RBP22.53■■□□□ 1.2
CHMP4A-203ENST00000527154 NFKBIEO00221 500 aa22.52■■□□□ 1.2
CHMP4A-203ENST00000527154 TIAM2Q8IVF5 1701 aa22.51■■□□□ 1.19
CHMP4A-203ENST00000527154 ZNF530Q6P9A1 599 aaPredicted RBP22.51■■□□□ 1.19
CHMP4A-203ENST00000527154 NFATC2IPQ8NCF5 419 aa22.51■■□□□ 1.19
CHMP4A-203ENST00000527154 AFDNP55196 1824 aaKnown RBP22.51■■□□□ 1.19
CHMP4A-203ENST00000527154 NFIXQ14938 502 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms