RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PLEKHO1Q53GL0 409 aaPredicted RBP9.06□□□□□ -0.96
CD44-221ENST00000526000 ZNF530Q6P9A1 599 aaPredicted RBP9.06□□□□□ -0.96
CD44-221ENST00000526000 PANK3Q9H999 370 aa9.06□□□□□ -0.96
CD44-221ENST00000526000 SRP68Q9UHB9 627 aaKnown RBP9.06□□□□□ -0.96
CD44-221ENST00000526000 SHANK3Q9BYB0 1731 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 MTHFSP49914 203 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 CNGB1Q14028 1251 aaPredicted RBP9.05□□□□□ -0.96
CD44-221ENST00000526000 AEBP1Q8IUX7 1158 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 NLGN1Q8N2Q7 840 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 NFATC2IPQ8NCF5 419 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 NMRK2Q9NPI5 230 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.05□□□□□ -0.96
CD44-221ENST00000526000 PARP3Q9Y6F1 533 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 UTRNP46939 3433 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 LY75O60449 1722 aa9.05□□□□□ -0.96
CD44-221ENST00000526000 RPS6KA4O75676 772 aa9.04□□□□□ -0.96
CD44-221ENST00000526000 GYS1P13807 737 aa9.04□□□□□ -0.96
CD44-221ENST00000526000 HTRA3P83110 453 aa9.04□□□□□ -0.96
CD44-221ENST00000526000 MORC1Q86VD1 984 aa9.04□□□□□ -0.96
CD44-221ENST00000526000 CCDC87Q9NVE4 849 aa9.04□□□□□ -0.96
CD44-221ENST00000526000 KIF24Q5T7B8 1368 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 ERVV-2B6SEH9 535 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 HSPA5P11021 654 aaKnown RBP9.03□□□□□ -0.96
CD44-221ENST00000526000 CHRNA5P30532 468 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 TGFB2P61812 414 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 C9orf131Q5VYM1 1079 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 SULT6B1Q6IMI4 303 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 DCAF5Q96JK2 942 aa9.03□□□□□ -0.96
CD44-221ENST00000526000 KCNA3P22001 575 aa9.02□□□□□ -0.97
CD44-221ENST00000526000 CRKLP46109 303 aaKnown RBP9.02□□□□□ -0.97
CD44-221ENST00000526000 FKBP8Q14318 412 aa9.02□□□□□ -0.97
CD44-221ENST00000526000 C1orf141Q5JVX7 400 aa9.02□□□□□ -0.97
CD44-221ENST00000526000 RC3H1Q5TC82 1133 aaKnown RBP9.02□□□□□ -0.97
CD44-221ENST00000526000 C4BP0C0L5 1744 aa9.02□□□□□ -0.97
CD44-221ENST00000526000 QSER1Q2KHR3 1735 aa9.02□□□□□ -0.97
CD44-221ENST00000526000 ADCY9O60503 1353 aa9.01□□□□□ -0.97
CD44-221ENST00000526000 HSP90AB1P08238 724 aaKnown RBP9.01□□□□□ -0.97
CD44-221ENST00000526000 SLC39A6Q13433 755 aa9.01□□□□□ -0.97
CD44-221ENST00000526000 DNAJC10Q8IXB1 793 aa9.01□□□□□ -0.97
CD44-221ENST00000526000 RRAGCQ9HB90 399 aa9.01□□□□□ -0.97
CD44-221ENST00000526000 LGR6Q9HBX8 967 aa9.01□□□□□ -0.97
CD44-221ENST00000526000 C5P01031 1676 aa9□□□□□ -0.97
CD44-221ENST00000526000 COL24A1Q17RW2 1714 aa9□□□□□ -0.97
CD44-221ENST00000526000 TOMM70O94826 608 aa9□□□□□ -0.97
CD44-221ENST00000526000 HMOX1P09601 288 aa9□□□□□ -0.97
CD44-221ENST00000526000 DDR1Q08345 913 aa9□□□□□ -0.97
CD44-221ENST00000526000 AMOTQ4VCS5 1084 aa9□□□□□ -0.97
CD44-221ENST00000526000 C16orf71Q8IYS4 520 aaPredicted RBP9□□□□□ -0.97
CD44-221ENST00000526000 RNF181Q9P0P0 153 aa9□□□□□ -0.97
CD44-221ENST00000526000 PIM2Q9P1W9 311 aa9□□□□□ -0.97
CD44-221ENST00000526000 TOGARAM1Q9Y4F4 1720 aa9□□□□□ -0.97
CD44-221ENST00000526000 ITGB4P16144 1822 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 APLP1P51693 650 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 EIF4G2P78344 907 aaKnown RBP eCLIP8.99□□□□□ -0.97
CD44-221ENST00000526000 DALRD3Q5D0E6 543 aaKnown RBP8.99□□□□□ -0.97
CD44-221ENST00000526000 USPL1Q5W0Q7 1092 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 INTS5Q6P9B9 1019 aaKnown RBP8.99□□□□□ -0.97
CD44-221ENST00000526000 BICDL1Q6ZP65 573 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 ZNF219Q9P2Y4 722 aaPredicted RBP8.99□□□□□ -0.97
CD44-221ENST00000526000 PXDNLA1KZ92 1463 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 CNTNAP4Q9C0A0 1308 aa8.99□□□□□ -0.97
CD44-221ENST00000526000 ZPR1O75312 459 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 ADRA2BP18089 450 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 CCDC24Q8N4L8 307 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 DNAJC5GQ8N7S2 189 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 KNSTRNQ9Y448 316 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 TAF1LQ8IZX4 1826 aa8.98□□□□□ -0.97
CD44-221ENST00000526000 KDM6AO15550 1401 aaPredicted RBP8.97□□□□□ -0.97
CD44-221ENST00000526000 NCAPD2Q15021 1401 aa8.97□□□□□ -0.97
CD44-221ENST00000526000 CAPN15O75808 1086 aa8.97□□□□□ -0.97
CD44-221ENST00000526000 CANXP27824 592 aaKnown RBP8.97□□□□□ -0.97
CD44-221ENST00000526000 IL13P35225 146 aa8.97□□□□□ -0.97
CD44-221ENST00000526000 RASSF7Q02833 373 aa8.97□□□□□ -0.97
CD44-221ENST00000526000 KDRP35968 1356 aa8.97□□□□□ -0.97
CD44-221ENST00000526000 UBR3Q6ZT12 1888 aa8.96□□□□□ -0.97
CD44-221ENST00000526000 CICQ96RK0 1608 aaPredicted RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 POLRMTO00411 1230 aaKnown RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 RNMTO43148 476 aaKnown RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 TM4SF1P30408 202 aa8.96□□□□□ -0.98
CD44-221ENST00000526000 NFIXQ14938 502 aa8.96□□□□□ -0.98
CD44-221ENST00000526000 ZNF330Q9Y3S2 320 aaPredicted RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 USP42Q9H9J4 1324 aaKnown RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 CLSPNQ9HAW4 1339 aa8.96□□□□□ -0.98
CD44-221ENST00000526000 MAP2P11137 1827 aaKnown RBP8.96□□□□□ -0.98
CD44-221ENST00000526000 KIF20BQ96Q89 1820 aa8.96□□□□□ -0.98
CD44-221ENST00000526000 SERPINB2P05120 415 aa8.95□□□□□ -0.98
CD44-221ENST00000526000 CYP19A1P11511 503 aaPredicted RBP8.95□□□□□ -0.98
CD44-221ENST00000526000 CC2D1BQ5T0F9 858 aaKnown RBP8.95□□□□□ -0.98
CD44-221ENST00000526000 SLC52A2Q9HAB3 445 aa8.95□□□□□ -0.98
CD44-221ENST00000526000 TIMELESSQ9UNS1 1208 aa8.95□□□□□ -0.98
CD44-221ENST00000526000 ZBTB1Q9Y2K1 713 aa8.95□□□□□ -0.98
CD44-221ENST00000526000 C10orf71Q711Q0 1435 aa8.95□□□□□ -0.98
CD44-221ENST00000526000 N4BP2Q86UW6 1770 aaPredicted RBP8.94□□□□□ -0.98
CD44-221ENST00000526000 PRELPP51888 382 aa8.94□□□□□ -0.98
CD44-221ENST00000526000 MTHFSDQ2M296 383 aaKnown RBP8.94□□□□□ -0.98
CD44-221ENST00000526000 AKAP4Q5JQC9 854 aa8.94□□□□□ -0.98
CD44-221ENST00000526000 COL13A1Q5TAT6 717 aaPredicted RBP8.94□□□□□ -0.98
CD44-221ENST00000526000 C2CD5Q86YS7 1000 aa8.94□□□□□ -0.98
CD44-221ENST00000526000 RBM46Q8TBY0 533 aaKnown RBP8.94□□□□□ -0.98
CD44-221ENST00000526000 CCER1Q8TC90 406 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms