RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	KRT76	Q01546	638 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	NCOA4	Q13772	614 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	TLR1	Q15399	786 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	DBN1	Q16643	649 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	WDR44	Q5JSH3	913 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	GNAS	Q5JWF2	1037 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	RNFT1	Q5M7Z0	435 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	TBC1D9	Q6ZT07	1266 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	SERTAD1	Q9UHV2	236 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	NOD1	Q9Y239	953 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293	PCDHGA11	Q9Y5H2	935 aa		5.1	□□□□□ -1.59
CD44-216	ENST00000525293		A6NJR5	290 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	USP17L5	A8MUK1	530 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	TMEM229A	B2RXF0	380 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	GTF2I	P78347	998 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	C4orf17	Q53FE4	359 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	TRIM22	Q8IYM9	498 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	ZNF837	Q96EG3	531 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-216	ENST00000525293	UCN2	Q96RP3	112 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	GPAM	Q9HCL2	828 aa		5.09	□□□□□ -1.59
CD44-216	ENST00000525293	GPR25	O00155	361 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293	F11	P03951	625 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293	SMTN	P53814	917 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293	PSME1	Q06323	249 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293	PPARGC1B	Q86YN6	1023 aa	Known RBP	5.08	□□□□□ -1.6
CD44-216	ENST00000525293	RHBDD1	Q8TEB9	315 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293	GLMN	Q92990	594 aa		5.08	□□□□□ -1.6
CD44-216	ENST00000525293		A0A1B0GTH6	734 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	USP17L3	A6NCW0	530 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	USP17L4	A6NCW7	530 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	FAM181B	A6NEQ2	426 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293		H7C1W4	665 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	ATP9B	O43861	1147 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	FOXR1	Q6PIV2	292 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	USP17L2	Q6R6M4	530 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	USP17L1	Q7RTZ2	530 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	5.07	□□□□□ -1.6
CD44-216	ENST00000525293	GTPBP3	Q969Y2	492 aa	Known RBP	5.07	□□□□□ -1.6
CD44-216	ENST00000525293	GMCL1	Q96IK5	515 aa		5.07	□□□□□ -1.6
CD44-216	ENST00000525293	CALR3	Q96L12	384 aa	Known RBP	5.07	□□□□□ -1.6
CD44-216	ENST00000525293	GAS6	Q14393	721 aa		5.06	□□□□□ -1.6
CD44-216	ENST00000525293	TRIM50	Q86XT4	487 aa		5.06	□□□□□ -1.6
CD44-216	ENST00000525293	PLEKHM2	Q8IWE5	1019 aa		5.06	□□□□□ -1.6
CD44-216	ENST00000525293	AIDA	Q96BJ3	306 aa		5.06	□□□□□ -1.6
CD44-216	ENST00000525293	SLC4A9	Q96Q91	983 aa		5.06	□□□□□ -1.6
CD44-216	ENST00000525293	NIFK	Q9BYG3	293 aa	Known RBP	5.06	□□□□□ -1.6
CD44-216	ENST00000525293	NUCKS1	Q9H1E3	243 aa	Known RBP	5.06	□□□□□ -1.6
CD44-216	ENST00000525293	TFIP11	Q9UBB9	837 aa	Known RBP	5.06	□□□□□ -1.6
CD44-216	ENST00000525293	MKRN1	Q9UHC7	482 aa	Known RBP	5.06	□□□□□ -1.6
CD44-216	ENST00000525293		A6NJY4	79 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	BACH1	O14867	736 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	ZBTB7B	O15156	539 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-216	ENST00000525293	MSX1	P28360	303 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	PLA2G4A	P47712	749 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	CLDN10	P78369	228 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	MTFR1	Q15390	333 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	RUBCNL	Q9H714	662 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	ZNF358	Q9NW07	568 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	ZNF777	Q9ULD5	760 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-216	ENST00000525293	USP3	Q9Y6I4	520 aa		5.05	□□□□□ -1.6
CD44-216	ENST00000525293	CDK2AP1	O14519	115 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	ADAMTS2	O95450	1211 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	THBS1	P07996	1170 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	CSB-PGBD3	P0DP91	1061 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	ATP1A2	P50993	1020 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	SUZ12	Q15022	739 aa	Known RBP	5.04	□□□□□ -1.6
CD44-216	ENST00000525293	CCDC102B	Q68D86	513 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	TNS4	Q8IZW8	715 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	PGBD3	Q8N328	593 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	OGFOD1	Q8N543	542 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	TPCN2	Q8NHX9	752 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	TRERF1	Q96PN7	1200 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	DNAAF2	Q9NVR5	837 aa	Known RBP	5.04	□□□□□ -1.6
CD44-216	ENST00000525293	CABP1	Q9NZU7	370 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-216	ENST00000525293	KIAA1024	Q9UPX6	916 aa		5.04	□□□□□ -1.6
CD44-216	ENST00000525293	PALM3	A6NDB9	673 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-216	ENST00000525293	SLURP2	P0DP57	97 aa		5.03	□□□□□ -1.6
CD44-216	ENST00000525293	SRSF11	Q05519	484 aa	Known RBP	5.03	□□□□□ -1.6
CD44-216	ENST00000525293	ZNF295-AS1	Q8N0V1	137 aa		5.03	□□□□□ -1.6
CD44-216	ENST00000525293	WHAMM	Q8TF30	809 aa		5.03	□□□□□ -1.6
CD44-216	ENST00000525293	PPP1R12C	Q9BZL4	782 aa		5.03	□□□□□ -1.6
CD44-216	ENST00000525293	MAFB	Q9Y5Q3	323 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-216	ENST00000525293	PARP3	Q9Y6F1	533 aa		5.03	□□□□□ -1.6
CD44-216	ENST00000525293	RASA1	P20936	1047 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	LMOD1	P29536	600 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-216	ENST00000525293	EFHC2	Q5JST6	749 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	TBCEL	Q5QJ74	424 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	ZNF385C	Q66K41	422 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-216	ENST00000525293	LYPD4	Q6UWN0	246 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	SVOP	Q8N4V2	548 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	ZNF594	Q96JF6	807 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-216	ENST00000525293	MBIP	Q9NS73	344 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	SCHIP1	Q9P0W5	487 aa	Predicted RBP	5.02	□□□□□ -1.61
CD44-216	ENST00000525293	IGF1R	P08069	1367 aa		5.02	□□□□□ -1.61
CD44-216	ENST00000525293	SFI1	A8K8P3	1242 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	MX2	P20592	715 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	ATP4A	P20648	1035 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	EPHA4	P54764	986 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	UBAP2L	Q14157	1087 aa	Known RBP	5.01	□□□□□ -1.61

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