RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ZNF837Q96EG3 531 aaPredicted RBP10.73□□□□□ -0.69
SKP1-213ENST00000524288 CUEDC1Q9NWM3 386 aaPredicted RBP10.73□□□□□ -0.69
SKP1-213ENST00000524288 GTF2E1P29083 439 aaPredicted RBP10.72□□□□□ -0.69
SKP1-213ENST00000524288 TSGA10IPQ3SY00 556 aa10.72□□□□□ -0.69
SKP1-213ENST00000524288 OXLD1Q5BKU9 147 aa10.72□□□□□ -0.69
SKP1-213ENST00000524288 ZSCAN10Q96SZ4 725 aaPredicted RBP10.72□□□□□ -0.69
SKP1-213ENST00000524288 PODXL2Q9NZ53 605 aa10.72□□□□□ -0.69
SKP1-213ENST00000524288 PLPP7Q8NBV4 271 aa10.71□□□□□ -0.69
SKP1-213ENST00000524288 TIMMDC1Q9NPL8 285 aa10.71□□□□□ -0.69
SKP1-213ENST00000524288 RIPOR1Q6ZS17 1223 aa10.7□□□□□ -0.7
SKP1-213ENST00000524288 ADAMTS19Q8TE59 1207 aa10.7□□□□□ -0.7
SKP1-213ENST00000524288 FHDC1Q9C0D6 1143 aaPredicted RBP10.7□□□□□ -0.7
SKP1-213ENST00000524288 PDIA4P13667 645 aaKnown RBP10.69□□□□□ -0.7
SKP1-213ENST00000524288 GNASQ5JWF2 1037 aa10.69□□□□□ -0.7
SKP1-213ENST00000524288 GAS2L1Q99501 681 aaPredicted RBP10.69□□□□□ -0.7
SKP1-213ENST00000524288 F11P03951 625 aa10.68□□□□□ -0.7
SKP1-213ENST00000524288 SRSF11Q05519 484 aaKnown RBP10.68□□□□□ -0.7
SKP1-213ENST00000524288 DBN1Q16643 649 aa10.68□□□□□ -0.7
SKP1-213ENST00000524288 HDGFL1Q5TGJ6 251 aa10.68□□□□□ -0.7
SKP1-213ENST00000524288 NFATC2IPQ8NCF5 419 aa10.68□□□□□ -0.7
SKP1-213ENST00000524288 ETNK1Q9HBU6 452 aa10.68□□□□□ -0.7
SKP1-213ENST00000524288 A0A1B0GTH6 734 aa10.67□□□□□ -0.7
SKP1-213ENST00000524288 LZTS3O60299 673 aaPredicted RBP10.67□□□□□ -0.7
SKP1-213ENST00000524288 GAS6Q14393 721 aa10.67□□□□□ -0.7
SKP1-213ENST00000524288 TMEM214Q6NUQ4 689 aaKnown RBP10.67□□□□□ -0.7
SKP1-213ENST00000524288 ALG2Q9H553 416 aa10.67□□□□□ -0.7
SKP1-213ENST00000524288 TRERF1Q96PN7 1200 aa10.66□□□□□ -0.7
SKP1-213ENST00000524288 MBIPQ9NS73 344 aa10.66□□□□□ -0.7
SKP1-213ENST00000524288 LBRQ14739 615 aaKnown RBP10.65□□□□□ -0.7
SKP1-213ENST00000524288 TLR1Q15399 786 aa10.65□□□□□ -0.7
SKP1-213ENST00000524288 ZNF385CQ66K41 422 aaPredicted RBP10.65□□□□□ -0.7
SKP1-213ENST00000524288 PPARGC1BQ86YN6 1023 aaKnown RBP10.65□□□□□ -0.7
SKP1-213ENST00000524288 SVOPQ8N4V2 548 aa10.65□□□□□ -0.7
SKP1-213ENST00000524288 RHBDD1Q8TEB9 315 aa10.65□□□□□ -0.7
SKP1-213ENST00000524288 NUCKS1Q9H1E3 243 aaKnown RBP10.65□□□□□ -0.7
SKP1-213ENST00000524288 ADAMTS2O95450 1211 aa10.64□□□□□ -0.71
SKP1-213ENST00000524288 INHAP05111 366 aa10.64□□□□□ -0.71
SKP1-213ENST00000524288 RFX1P22670 979 aa10.64□□□□□ -0.71
SKP1-213ENST00000524288 SCNN1DP51172 638 aa10.64□□□□□ -0.71
SKP1-213ENST00000524288 GDF10P55107 478 aa10.64□□□□□ -0.71
SKP1-213ENST00000524288 EML3Q32P44 896 aa10.63□□□□□ -0.71
SKP1-213ENST00000524288 C4orf17Q53FE4 359 aa10.63□□□□□ -0.71
SKP1-213ENST00000524288 RNF225M0QZC1 329 aaPredicted RBP10.62□□□□□ -0.71
SKP1-213ENST00000524288 RETREG2Q8NC44 543 aa10.62□□□□□ -0.71
SKP1-213ENST00000524288 GTPBP3Q969Y2 492 aaKnown RBP10.62□□□□□ -0.71
SKP1-213ENST00000524288 NSFL1CQ9UNZ2 370 aaKnown RBP10.61□□□□□ -0.71
SKP1-213ENST00000524288 ADAMTS8Q9UP79 889 aa10.61□□□□□ -0.71
SKP1-213ENST00000524288 GPR25O00155 361 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 PIK3CDO00329 1044 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 CSB-PGBD3P0DP91 1061 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 SKIP12755 728 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 PHKA2P46019 1235 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 KCNMA1Q12791 1236 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 PGBD3Q8N328 593 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 CFHR5Q9BXR6 569 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 NOD1Q9Y239 953 aa10.6□□□□□ -0.71
SKP1-213ENST00000524288 ARHGEF15O94989 841 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 STAU1O95793 577 aaKnown RBP10.59□□□□□ -0.71
SKP1-213ENST00000524288 SMTNP53814 917 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 MAP3K10Q02779 954 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 WHAMMQ8TF30 809 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 SLC4A9Q96Q91 983 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 PHF24Q9UPV7 400 aa10.59□□□□□ -0.71
SKP1-213ENST00000524288 IGF1RP08069 1367 aa10.58□□□□□ -0.72
SKP1-213ENST00000524288 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.58□□□□□ -0.72
SKP1-213ENST00000524288 C1orf216Q8TAB5 229 aa10.58□□□□□ -0.72
SKP1-213ENST00000524288 GPAMQ9HCL2 828 aa10.58□□□□□ -0.72
SKP1-213ENST00000524288 PCDHGA11Q9Y5H2 935 aa10.58□□□□□ -0.72
SKP1-213ENST00000524288 TMEM229AB2RXF0 380 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 MX2P20592 715 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 MTFR1Q15390 333 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 EFHC2Q5JST6 749 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 TBC1D9Q6ZT07 1266 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 NIFKQ9BYG3 293 aaKnown RBP10.57□□□□□ -0.72
SKP1-213ENST00000524288 CRISPLD1Q9H336 500 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 ENAMQ9NRM1 1142 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 LRRC4BQ9NT99 713 aa10.57□□□□□ -0.72
SKP1-213ENST00000524288 MSX1P28360 303 aa10.56□□□□□ -0.72
SKP1-213ENST00000524288 CFAP70Q5T0N1 1121 aa10.56□□□□□ -0.72
SKP1-213ENST00000524288 USP17L5A8MUK1 530 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 CDK2AP1O14519 115 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 BACH1O14867 736 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 THBS1P07996 1170 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 CELA2BP08218 269 aaPredicted RBP10.55□□□□□ -0.72
SKP1-213ENST00000524288 GTF2IP78347 998 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 NCOA4Q13772 614 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 LYPD4Q6UWN0 246 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 UCN2Q96RP3 112 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 PPP1R12CQ9BZL4 782 aa10.55□□□□□ -0.72
SKP1-213ENST00000524288 MAP2K3P46734 347 aa10.54□□□□□ -0.72
SKP1-213ENST00000524288 PLA2G4AP47712 749 aa10.54□□□□□ -0.72
SKP1-213ENST00000524288 PLEKHM2Q8IWE5 1019 aa10.54□□□□□ -0.72
SKP1-213ENST00000524288 PALM3A6NDB9 673 aaPredicted RBP10.53□□□□□ -0.72
SKP1-213ENST00000524288 A6NJY4 79 aa10.53□□□□□ -0.72
SKP1-213ENST00000524288 LMOD1P29536 600 aaPredicted RBP10.53□□□□□ -0.72
SKP1-213ENST00000524288 TRIM50Q86XT4 487 aa10.53□□□□□ -0.72
SKP1-213ENST00000524288 RUBCNLQ9H714 662 aa10.53□□□□□ -0.72
SKP1-213ENST00000524288 SERTAD1Q9UHV2 236 aa10.53□□□□□ -0.72
SKP1-213ENST00000524288 ATXN7L1Q9ULK2 861 aaPredicted RBP10.53□□□□□ -0.72
SKP1-213ENST00000524288 ZBTB7CA1YPR0 619 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms