RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 KIF13BQ9NQT8 1826 aa16.29■□□□□ 0.2
SDCBP-211ENST00000523441 COL13A1Q5TAT6 717 aaPredicted RBP16.29■□□□□ 0.2
SDCBP-211ENST00000523441 TESK2Q96S53 571 aa16.29■□□□□ 0.2
SDCBP-211ENST00000523441 DPEP1P16444 411 aa16.28■□□□□ 0.2
SDCBP-211ENST00000523441 PUS7Q96PZ0 661 aaKnown RBP16.28■□□□□ 0.2
SDCBP-211ENST00000523441 RBM42Q9BTD8 480 aaKnown RBP16.28■□□□□ 0.2
SDCBP-211ENST00000523441 SPG7Q9UQ90 795 aa16.28■□□□□ 0.2
SDCBP-211ENST00000523441 C9orf131Q5VYM1 1079 aa16.27■□□□□ 0.2
SDCBP-211ENST00000523441 TRAPPC3LQ5T215 181 aa16.26■□□□□ 0.19
SDCBP-211ENST00000523441 RTCBQ9Y3I0 505 aaKnown RBP16.26■□□□□ 0.19
SDCBP-211ENST00000523441 C4AP0C0L4 1744 aa16.25■□□□□ 0.19
SDCBP-211ENST00000523441 KCPQ6ZWJ8 1503 aa16.25■□□□□ 0.19
SDCBP-211ENST00000523441 TMF1P82094 1093 aa16.25■□□□□ 0.19
SDCBP-211ENST00000523441 CCDC87Q9NVE4 849 aa16.25■□□□□ 0.19
SDCBP-211ENST00000523441 BRCA1P38398 1863 aaKnown RBP16.25■□□□□ 0.19
SDCBP-211ENST00000523441 TGFB2P61812 414 aa16.24■□□□□ 0.19
SDCBP-211ENST00000523441 KLRG1Q96E93 195 aa16.24■□□□□ 0.19
SDCBP-211ENST00000523441 RRAGCQ9HB90 399 aa16.24■□□□□ 0.19
SDCBP-211ENST00000523441 ATG3Q9NT62 314 aa16.24■□□□□ 0.19
SDCBP-211ENST00000523441 PARP3Q9Y6F1 533 aa16.24■□□□□ 0.19
SDCBP-211ENST00000523441 C10orf71Q711Q0 1435 aa16.23■□□□□ 0.19
SDCBP-211ENST00000523441 TNS4Q8IZW8 715 aa16.23■□□□□ 0.19
SDCBP-211ENST00000523441 ARFGEF1Q9Y6D6 1849 aa16.22■□□□□ 0.19
SDCBP-211ENST00000523441 RFC4P35249 363 aa16.22■□□□□ 0.19
SDCBP-211ENST00000523441 NKX1-1Q15270 411 aaPredicted RBP16.22■□□□□ 0.19
SDCBP-211ENST00000523441 NLGN1Q8N2Q7 840 aa16.22■□□□□ 0.19
SDCBP-211ENST00000523441 RBM46Q8TBY0 533 aaKnown RBP16.22■□□□□ 0.19
SDCBP-211ENST00000523441 ARHGEF1Q92888 912 aaKnown RBP16.22■□□□□ 0.19
SDCBP-211ENST00000523441 RNF181Q9P0P0 153 aa16.22■□□□□ 0.19
SDCBP-211ENST00000523441 PHKG2P15735 406 aa16.21■□□□□ 0.19
SDCBP-211ENST00000523441 IFNL2Q8IZJ0 200 aa16.21■□□□□ 0.19
SDCBP-211ENST00000523441 COL5A3P25940 1745 aaPredicted RBP16.2■□□□□ 0.18
SDCBP-211ENST00000523441 TNNT2P45379 298 aaPredicted RBP16.2■□□□□ 0.18
SDCBP-211ENST00000523441 EYA1Q99502 592 aa16.2■□□□□ 0.18
SDCBP-211ENST00000523441 GYS1P13807 737 aa16.19■□□□□ 0.18
SDCBP-211ENST00000523441 CHRNA5P30532 468 aa16.19■□□□□ 0.18
SDCBP-211ENST00000523441 SLC4A9Q96Q91 983 aa16.19■□□□□ 0.18
SDCBP-211ENST00000523441 SRP68Q9UHB9 627 aaKnown RBP16.19■□□□□ 0.18
SDCBP-211ENST00000523441 KDM2BQ8NHM5 1336 aa16.19■□□□□ 0.18
SDCBP-211ENST00000523441 PIM2Q9P1W9 311 aa16.18■□□□□ 0.18
SDCBP-211ENST00000523441 MYH14Q7Z406 1995 aaKnown RBP16.18■□□□□ 0.18
SDCBP-211ENST00000523441 SBF1O95248 1867 aa16.18■□□□□ 0.18
SDCBP-211ENST00000523441 TNRC6CQ9HCJ0 1690 aaKnown RBP16.18■□□□□ 0.18
SDCBP-211ENST00000523441 PLEKHG2Q9H7P9 1386 aa16.17■□□□□ 0.18
SDCBP-211ENST00000523441 KCNA3P22001 575 aa16.17■□□□□ 0.18
SDCBP-211ENST00000523441 DALRD3Q5D0E6 543 aaKnown RBP16.17■□□□□ 0.18
SDCBP-211ENST00000523441 POLR3GLQ9BT43 218 aa16.17■□□□□ 0.18
SDCBP-211ENST00000523441 KIF24Q5T7B8 1368 aa16.16■□□□□ 0.18
SDCBP-211ENST00000523441 PTCD1O75127 700 aaKnown RBP16.16■□□□□ 0.18
SDCBP-211ENST00000523441 FSTL1Q12841 308 aa16.16■□□□□ 0.18
SDCBP-211ENST00000523441 CARD14Q9BXL6 1004 aa16.16■□□□□ 0.18
SDCBP-211ENST00000523441 KDRP35968 1356 aa16.15■□□□□ 0.18
SDCBP-211ENST00000523441 RASSF7Q02833 373 aa16.15■□□□□ 0.18
SDCBP-211ENST00000523441 CCDC88AQ3V6T2 1871 aa16.15■□□□□ 0.18
SDCBP-211ENST00000523441 JMYQ8N9B5 988 aa16.15■□□□□ 0.18
SDCBP-211ENST00000523441 ANKRD26Q9UPS8 1709 aa16.15■□□□□ 0.18
SDCBP-211ENST00000523441 RPS6KA4O75676 772 aa16.14■□□□□ 0.17
SDCBP-211ENST00000523441 CABP4P57796 275 aa16.14■□□□□ 0.17
SDCBP-211ENST00000523441 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SDCBP-211ENST00000523441 PCNTO95613 3336 aa16.14■□□□□ 0.17
SDCBP-211ENST00000523441 NCAPD2Q15021 1401 aa16.13■□□□□ 0.17
SDCBP-211ENST00000523441 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
SDCBP-211ENST00000523441 DDR1Q08345 913 aa16.13■□□□□ 0.17
SDCBP-211ENST00000523441 DCAF5Q96JK2 942 aa16.13■□□□□ 0.17
SDCBP-211ENST00000523441 WASHC2AQ641Q2 1341 aa16.13■□□□□ 0.17
SDCBP-211ENST00000523441 HSPA1AP0DMV8 641 aaKnown RBP16.12■□□□□ 0.17
SDCBP-211ENST00000523441 HSPA1BP0DMV9 641 aaKnown RBP16.12■□□□□ 0.17
SDCBP-211ENST00000523441 ADRA2BP18089 450 aa16.12■□□□□ 0.17
SDCBP-211ENST00000523441 EIF4A2Q14240 407 aaKnown RBP16.12■□□□□ 0.17
SDCBP-211ENST00000523441 RC3H1Q5TC82 1133 aaKnown RBP16.12■□□□□ 0.17
SDCBP-211ENST00000523441 SMC1BQ8NDV3 1235 aa16.12■□□□□ 0.17
SDCBP-211ENST00000523441 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.12■□□□□ 0.17
SDCBP-211ENST00000523441 CNTNAP4Q9C0A0 1308 aa16.12■□□□□ 0.17
SDCBP-211ENST00000523441 CRKLP46109 303 aaKnown RBP16.11■□□□□ 0.17
SDCBP-211ENST00000523441 PRELPP51888 382 aa16.11■□□□□ 0.17
SDCBP-211ENST00000523441 ZNF530Q6P9A1 599 aaPredicted RBP16.11■□□□□ 0.17
SDCBP-211ENST00000523441 POLKQ9UBT6 870 aa16.1■□□□□ 0.17
SDCBP-211ENST00000523441 ZNF831Q5JPB2 1677 aa16.1■□□□□ 0.17
SDCBP-211ENST00000523441 TIAM2Q8IVF5 1701 aa16.1■□□□□ 0.17
SDCBP-211ENST00000523441 TJP1Q07157 1748 aa16.09■□□□□ 0.17
SDCBP-211ENST00000523441 ERVV-2B6SEH9 535 aa16.09■□□□□ 0.17
SDCBP-211ENST00000523441 CDCA8Q53HL2 280 aa16.09■□□□□ 0.17
SDCBP-211ENST00000523441 AFDNP55196 1824 aaKnown RBP16.08■□□□□ 0.17
SDCBP-211ENST00000523441 PLEKHO1Q53GL0 409 aaPredicted RBP16.08■□□□□ 0.16
SDCBP-211ENST00000523441 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
SDCBP-211ENST00000523441 KDM6AO15550 1401 aaPredicted RBP16.08■□□□□ 0.16
SDCBP-211ENST00000523441 HSP90AB1P08238 724 aaKnown RBP16.07■□□□□ 0.16
SDCBP-211ENST00000523441 MTHFSP49914 203 aa16.07■□□□□ 0.16
SDCBP-211ENST00000523441 USPL1Q5W0Q7 1092 aa16.07■□□□□ 0.16
SDCBP-211ENST00000523441 NFATC2IPQ8NCF5 419 aa16.07■□□□□ 0.16
SDCBP-211ENST00000523441 ZNF219Q9P2Y4 722 aaPredicted RBP16.07■□□□□ 0.16
SDCBP-211ENST00000523441 ZPR1O75312 459 aa16.06■□□□□ 0.16
SDCBP-211ENST00000523441 C1orf141Q5JVX7 400 aa16.06■□□□□ 0.16
SDCBP-211ENST00000523441 POLRMTO00411 1230 aaKnown RBP16.05■□□□□ 0.16
SDCBP-211ENST00000523441 VEGFAP15692 232 aaPredicted RBP16.04■□□□□ 0.16
SDCBP-211ENST00000523441 AEBP1Q8IUX7 1158 aa16.04■□□□□ 0.16
SDCBP-211ENST00000523441 LMNB1P20700 586 aa16.03■□□□□ 0.16
SDCBP-211ENST00000523441 BICDL1Q6ZP65 573 aa16.03■□□□□ 0.16
SDCBP-211ENST00000523441 DNAJC10Q8IXB1 793 aa16.03■□□□□ 0.16
SDCBP-211ENST00000523441 MKRN1Q9UHC7 482 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms