RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TBC1D2BQ9UPU7 963 aa9.39□□□□□ -0.91
NUP54-218ENST00000515460 KCNMA1Q12791 1236 aa9.38□□□□□ -0.91
NUP54-218ENST00000515460 CLN3Q13286 438 aa9.38□□□□□ -0.91
NUP54-218ENST00000515460 ZNF837Q96EG3 531 aaPredicted RBP9.38□□□□□ -0.91
NUP54-218ENST00000515460 CDCA7Q9BWT1 371 aaPredicted RBP9.38□□□□□ -0.91
NUP54-218ENST00000515460 TRAK2O60296 914 aa9.37□□□□□ -0.91
NUP54-218ENST00000515460 GAS6Q14393 721 aa9.37□□□□□ -0.91
NUP54-218ENST00000515460 TRIM22Q8IYM9 498 aa9.37□□□□□ -0.91
NUP54-218ENST00000515460 GRIP2Q9C0E4 1043 aa9.37□□□□□ -0.91
NUP54-218ENST00000515460 PRM3Q9NNZ6 103 aa9.37□□□□□ -0.91
NUP54-218ENST00000515460 TTBK1Q5TCY1 1321 aaPredicted RBP9.36□□□□□ -0.91
NUP54-218ENST00000515460 ABCC10Q5T3U5 1492 aa9.36□□□□□ -0.91
NUP54-218ENST00000515460 GSK3AP49840 483 aa9.36□□□□□ -0.91
NUP54-218ENST00000515460 NBPF10Q6P3W6 841 aaKnown RBP9.36□□□□□ -0.91
NUP54-218ENST00000515460 FOXR1Q6PIV2 292 aa9.36□□□□□ -0.91
NUP54-218ENST00000515460 NBPF15Q8N660 670 aa9.36□□□□□ -0.91
NUP54-218ENST00000515460 GTPBP3Q969Y2 492 aaKnown RBP9.36□□□□□ -0.91
NUP54-218ENST00000515460 CCDC85AQ96PX6 553 aaPredicted RBP9.36□□□□□ -0.91
NUP54-218ENST00000515460 DYRK1BQ9Y463 629 aa9.36□□□□□ -0.91
NUP54-218ENST00000515460 MYCP01106 439 aaPredicted RBP9.35□□□□□ -0.91
NUP54-218ENST00000515460 TSGA10IPQ3SY00 556 aa9.35□□□□□ -0.91
NUP54-218ENST00000515460 LYPD4Q6UWN0 246 aa9.35□□□□□ -0.91
NUP54-218ENST00000515460 KCTD17Q8N5Z5 321 aa9.35□□□□□ -0.91
NUP54-218ENST00000515460 CNKSR1Q969H4 720 aa9.35□□□□□ -0.91
NUP54-218ENST00000515460 TIMMDC1Q9NPL8 285 aa9.35□□□□□ -0.91
NUP54-218ENST00000515460 ARHGEF15O94989 841 aa9.34□□□□□ -0.91
NUP54-218ENST00000515460 GDF11O95390 407 aa9.34□□□□□ -0.91
NUP54-218ENST00000515460 MARSP56192 900 aaKnown RBP9.34□□□□□ -0.91
NUP54-218ENST00000515460 RASSF7Q02833 373 aa9.34□□□□□ -0.91
NUP54-218ENST00000515460 SRSF11Q05519 484 aaKnown RBP9.34□□□□□ -0.91
NUP54-218ENST00000515460 TMEM151AQ8N4L1 468 aa9.34□□□□□ -0.91
NUP54-218ENST00000515460 H7C1W4 665 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 GNRH1P01148 92 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 IL2RAP01589 272 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 PHKA2P46019 1235 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 MAP3K10Q02779 954 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 CENPCQ03188 943 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 TAS1R3Q7RTX0 852 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 GMCL1Q96IK5 515 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 ESYT1Q9BSJ8 1104 aa9.33□□□□□ -0.92
NUP54-218ENST00000515460 RNF225M0QZC1 329 aaPredicted RBP9.32□□□□□ -0.92
NUP54-218ENST00000515460 WASLO00401 505 aaPredicted RBP9.32□□□□□ -0.92
NUP54-218ENST00000515460 EIF4G2P78344 907 aaKnown RBP eCLIP9.32□□□□□ -0.92
NUP54-218ENST00000515460 SYNJ1O43426 1573 aa9.32□□□□□ -0.92
NUP54-218ENST00000515460 SPATA31C2B4DYI2 1134 aa9.31□□□□□ -0.92
NUP54-218ENST00000515460 CELA2BP08218 269 aaPredicted RBP9.31□□□□□ -0.92
NUP54-218ENST00000515460 IRS1P35568 1242 aa9.31□□□□□ -0.92
NUP54-218ENST00000515460 IRF5Q13568 498 aa9.31□□□□□ -0.92
NUP54-218ENST00000515460 SLFNL1Q499Z3 407 aa9.31□□□□□ -0.92
NUP54-218ENST00000515460 CHMP7Q8WUX9 453 aaPredicted RBP9.31□□□□□ -0.92
NUP54-218ENST00000515460 MBIPQ9NS73 344 aa9.31□□□□□ -0.92
NUP54-218ENST00000515460 DIP2BQ9P265 1576 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 IGF1RP08069 1367 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 F11P03951 625 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 VAC14Q08AM6 782 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 WDR44Q5JSH3 913 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 TRERF1Q96PN7 1200 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 ZSCAN10Q96SZ4 725 aaPredicted RBP9.3□□□□□ -0.92
NUP54-218ENST00000515460 GDPD2Q9HCC8 539 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 GPAMQ9HCL2 828 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 DOLKQ9UPQ8 538 aa9.3□□□□□ -0.92
NUP54-218ENST00000515460 STAU1O95793 577 aaKnown RBP9.29□□□□□ -0.92
NUP54-218ENST00000515460 ABL2P42684 1182 aa9.29□□□□□ -0.92
NUP54-218ENST00000515460 HSPA2P54652 639 aa9.29□□□□□ -0.92
NUP54-218ENST00000515460 RNF135Q8IUD6 432 aa9.29□□□□□ -0.92
NUP54-218ENST00000515460 NUCKS1Q9H1E3 243 aaKnown RBP9.29□□□□□ -0.92
NUP54-218ENST00000515460 SRCAPQ6ZRS2 3230 aa9.29□□□□□ -0.92
NUP54-218ENST00000515460 GTF2E1P29083 439 aaPredicted RBP9.28□□□□□ -0.92
NUP54-218ENST00000515460 USP4Q13107 963 aa9.28□□□□□ -0.92
NUP54-218ENST00000515460 OXLD1Q5BKU9 147 aa9.28□□□□□ -0.92
NUP54-218ENST00000515460 TMEM214Q6NUQ4 689 aaKnown RBP9.28□□□□□ -0.92
NUP54-218ENST00000515460 XAGE2Q96GT9 111 aa9.28□□□□□ -0.92
NUP54-218ENST00000515460 PHTF2Q8N3S3 785 aa9.27□□□□□ -0.93
NUP54-218ENST00000515460 ENAMQ9NRM1 1142 aa9.27□□□□□ -0.93
NUP54-218ENST00000515460 MX2P20592 715 aa9.26□□□□□ -0.93
NUP54-218ENST00000515460 ESCO1Q5FWF5 840 aa9.26□□□□□ -0.93
NUP54-218ENST00000515460 GNASQ5JWF2 1037 aa9.26□□□□□ -0.93
NUP54-218ENST00000515460 SCARF2Q96GP6 870 aaPredicted RBP9.26□□□□□ -0.93
NUP54-218ENST00000515460 FHDC1Q9C0D6 1143 aaPredicted RBP9.25□□□□□ -0.93
NUP54-218ENST00000515460 HRH3Q9Y5N1 445 aa9.25□□□□□ -0.93
NUP54-218ENST00000515460 WIZO95785 1651 aa9.25□□□□□ -0.93
NUP54-218ENST00000515460 SNAPC4Q5SXM2 1469 aa9.24□□□□□ -0.93
NUP54-218ENST00000515460 COL17A1Q9UMD9 1497 aaPredicted RBP9.24□□□□□ -0.93
NUP54-218ENST00000515460 C4orf17Q53FE4 359 aa9.24□□□□□ -0.93
NUP54-218ENST00000515460 NEDD1Q8NHV4 660 aa9.24□□□□□ -0.93
NUP54-218ENST00000515460 ACDQ96AP0 544 aa9.24□□□□□ -0.93
NUP54-218ENST00000515460 TOP2BQ02880 1626 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 THBS1P07996 1170 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 BCRP11274 1271 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 MCM6Q14566 821 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 RUBCNLQ9H714 662 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 ETNK1Q9HBU6 452 aa9.23□□□□□ -0.93
NUP54-218ENST00000515460 NSFL1CQ9UNZ2 370 aaKnown RBP9.23□□□□□ -0.93
NUP54-218ENST00000515460 PCF11O94913 1555 aaKnown RBP9.22□□□□□ -0.93
NUP54-218ENST00000515460 A0A1B0GTH6 734 aa9.22□□□□□ -0.93
NUP54-218ENST00000515460 CSB-PGBD3P0DP91 1061 aa9.22□□□□□ -0.93
NUP54-218ENST00000515460 SEMA3FQ13275 785 aa9.22□□□□□ -0.93
NUP54-218ENST00000515460 TLR1Q15399 786 aa9.22□□□□□ -0.93
NUP54-218ENST00000515460 PGBD3Q8N328 593 aa9.22□□□□□ -0.93
NUP54-218ENST00000515460 CNTNAP5Q8WYK1 1306 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms