RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 KDRP35968 1356 aa15.36■□□□□ 0.05
DDX41-216ENST00000513562 COL13A1Q5TAT6 717 aaPredicted RBP15.35■□□□□ 0.05
DDX41-216ENST00000513562 ARHGAP27Q6ZUM4 889 aa15.35■□□□□ 0.05
DDX41-216ENST00000513562 NLGN1Q8N2Q7 840 aa15.35■□□□□ 0.05
DDX41-216ENST00000513562 ITGB4P16144 1822 aa15.35■□□□□ 0.05
DDX41-216ENST00000513562 KIF13BQ9NQT8 1826 aa15.35■□□□□ 0.05
DDX41-216ENST00000513562 PLEKHG2Q9H7P9 1386 aa15.35■□□□□ 0.05
DDX41-216ENST00000513562 WDR90Q96KV7 1748 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 DPEP1P16444 411 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 FSTL1Q12841 308 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 ATG3Q9NT62 314 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.34■□□□□ 0.05
DDX41-216ENST00000513562 EMILIN1Q9Y6C2 1016 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 TONSLQ96HA7 1378 aa15.34■□□□□ 0.05
DDX41-216ENST00000513562 FCHSD2O94868 740 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 TMF1P82094 1093 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 HTRA3P83110 453 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 TRAPPC3LQ5T215 181 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 C9orf131Q5VYM1 1079 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 CCDC87Q9NVE4 849 aa15.33■□□□□ 0.04
DDX41-216ENST00000513562 RTCBQ9Y3I0 505 aaKnown RBP15.33■□□□□ 0.04
DDX41-216ENST00000513562 PHKG2P15735 406 aa15.32■□□□□ 0.04
DDX41-216ENST00000513562 ADRA2BP18089 450 aa15.32■□□□□ 0.04
DDX41-216ENST00000513562 C16orf71Q8IYS4 520 aaPredicted RBP15.32■□□□□ 0.04
DDX41-216ENST00000513562 GYS1P13807 737 aa15.31■□□□□ 0.04
DDX41-216ENST00000513562 KCNA3P22001 575 aa15.31■□□□□ 0.04
DDX41-216ENST00000513562 IFNL2Q8IZJ0 200 aa15.31■□□□□ 0.04
DDX41-216ENST00000513562 SLC4A9Q96Q91 983 aa15.31■□□□□ 0.04
DDX41-216ENST00000513562 PCNTO95613 3336 aa15.3■□□□□ 0.04
DDX41-216ENST00000513562 C4AP0C0L4 1744 aa15.3■□□□□ 0.04
DDX41-216ENST00000513562 ARHGEF1Q92888 912 aaKnown RBP15.3■□□□□ 0.04
DDX41-216ENST00000513562 N4BP2Q86UW6 1770 aaPredicted RBP15.29■□□□□ 0.04
DDX41-216ENST00000513562 KCPQ6ZWJ8 1503 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 WASHC2AQ641Q2 1341 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 KDM2BQ8NHM5 1336 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 CNTNAP4Q9C0A0 1308 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 RC3H1Q5TC82 1133 aaKnown RBP15.29■□□□□ 0.04
DDX41-216ENST00000513562 DCAF5Q96JK2 942 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 EYA1Q99502 592 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 PARP3Q9Y6F1 533 aa15.29■□□□□ 0.04
DDX41-216ENST00000513562 KIF20BQ96Q89 1820 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 ANKRD26Q9UPS8 1709 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 PPM1GO15355 546 aaPredicted RBP15.27■□□□□ 0.04
DDX41-216ENST00000513562 RPS6KA4O75676 772 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 CAPN15O75808 1086 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 RFC4P35249 363 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 PRELPP51888 382 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 TNS4Q8IZW8 715 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 CARD14Q9BXL6 1004 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 PIM2Q9P1W9 311 aa15.27■□□□□ 0.04
DDX41-216ENST00000513562 ZNF831Q5JPB2 1677 aa15.27■□□□□ 0.03
DDX41-216ENST00000513562 DALRD3Q5D0E6 543 aaKnown RBP15.26■□□□□ 0.03
DDX41-216ENST00000513562 RNF181Q9P0P0 153 aa15.26■□□□□ 0.03
DDX41-216ENST00000513562 BRCA1P38398 1863 aaKnown RBP15.25■□□□□ 0.03
DDX41-216ENST00000513562 ERVV-2B6SEH9 535 aa15.25■□□□□ 0.03
DDX41-216ENST00000513562 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
DDX41-216ENST00000513562 RRAGCQ9HB90 399 aa15.25■□□□□ 0.03
DDX41-216ENST00000513562 CDCA8Q53HL2 280 aa15.24■□□□□ 0.03
DDX41-216ENST00000513562 SMC1BQ8NDV3 1235 aa15.24■□□□□ 0.03
DDX41-216ENST00000513562 DDR1Q08345 913 aa15.23■□□□□ 0.03
DDX41-216ENST00000513562 COL5A3P25940 1745 aaPredicted RBP15.23■□□□□ 0.03
DDX41-216ENST00000513562 ZC3H4Q9UPT8 1303 aaKnown RBP15.22■□□□□ 0.03
DDX41-216ENST00000513562 HSP90AB1P08238 724 aaKnown RBP15.22■□□□□ 0.03
DDX41-216ENST00000513562 POLKQ9UBT6 870 aa15.22■□□□□ 0.03
DDX41-216ENST00000513562 TNRC6CQ9HCJ0 1690 aaKnown RBP15.22■□□□□ 0.03
DDX41-216ENST00000513562 ARFGEF1Q9Y6D6 1849 aa15.22■□□□□ 0.03
DDX41-216ENST00000513562 USP42Q9H9J4 1324 aaKnown RBP15.21■□□□□ 0.03
DDX41-216ENST00000513562 KDM6AO15550 1401 aaPredicted RBP15.21■□□□□ 0.03
DDX41-216ENST00000513562 EIF4A2Q14240 407 aaKnown RBP15.21■□□□□ 0.03
DDX41-216ENST00000513562 FKBP8Q14318 412 aa15.21■□□□□ 0.03
DDX41-216ENST00000513562 SRP68Q9UHB9 627 aaKnown RBP15.21■□□□□ 0.03
DDX41-216ENST00000513562 CHRNA5P30532 468 aa15.2■□□□□ 0.02
DDX41-216ENST00000513562 HSPA1AP0DMV8 641 aaKnown RBP15.19■□□□□ 0.02
DDX41-216ENST00000513562 HSPA1BP0DMV9 641 aaKnown RBP15.19■□□□□ 0.02
DDX41-216ENST00000513562 CRKLP46109 303 aaKnown RBP15.19■□□□□ 0.02
DDX41-216ENST00000513562 POLRMTO00411 1230 aaKnown RBP15.18■□□□□ 0.02
DDX41-216ENST00000513562 CABP4P57796 275 aa15.18■□□□□ 0.02
DDX41-216ENST00000513562 PTCD1O75127 700 aaKnown RBP15.17■□□□□ 0.02
DDX41-216ENST00000513562 TM4SF1P30408 202 aa15.17■□□□□ 0.02
DDX41-216ENST00000513562 RASSF7Q02833 373 aa15.17■□□□□ 0.02
DDX41-216ENST00000513562 GLTPD2A6NH11 291 aa15.16■□□□□ 0.02
DDX41-216ENST00000513562 VEGFAP15692 232 aaPredicted RBP15.16■□□□□ 0.02
DDX41-216ENST00000513562 LMNB1P20700 586 aa15.16■□□□□ 0.02
DDX41-216ENST00000513562 PLEKHO1Q53GL0 409 aaPredicted RBP15.16■□□□□ 0.02
DDX41-216ENST00000513562 ZNF530Q6P9A1 599 aaPredicted RBP15.16■□□□□ 0.02
DDX41-216ENST00000513562 AMOTQ4VCS5 1084 aa15.15■□□□□ 0.02
DDX41-216ENST00000513562 INTS5Q6P9B9 1019 aaKnown RBP15.14■□□□□ 0.01
DDX41-216ENST00000513562 ADAMTS7Q9UKP4 1686 aa15.13■□□□□ 0.01
DDX41-216ENST00000513562 MYH14Q7Z406 1995 aaKnown RBP15.13■□□□□ 0.01
DDX41-216ENST00000513562 MTHFSP49914 203 aa15.13■□□□□ 0.01
DDX41-216ENST00000513562 TJP1Q07157 1748 aa15.12■□□□□ 0.01
DDX41-216ENST00000513562 USPL1Q5W0Q7 1092 aa15.12■□□□□ 0.01
DDX41-216ENST00000513562 NFATC2IPQ8NCF5 419 aa15.12■□□□□ 0.01
DDX41-216ENST00000513562 SOS1Q07889 1333 aaPredicted RBP15.12■□□□□ 0.01
DDX41-216ENST00000513562 ZPR1O75312 459 aa15.11■□□□□ 0.01
DDX41-216ENST00000513562 TNNT2P45379 298 aaPredicted RBP15.11■□□□□ 0.01
DDX41-216ENST00000513562 C1orf141Q5JVX7 400 aa15.11■□□□□ 0.01
DDX41-216ENST00000513562 POTECB2RU33 542 aa15.1■□□□□ 0.01
DDX41-216ENST00000513562 NFKBIEO00221 500 aa15.1■□□□□ 0.01
DDX41-216ENST00000513562 NFIXQ14938 502 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms