RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NUCB1Q02818 461 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 DDX54Q8TDD1 881 aaKnown RBP13.28□□□□□ -0.28
TCOF1-211ENST00000513346 FEZ1Q99689 392 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 SRCIN1Q9C0H9 1055 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 UHRF1BP1LA0JNW5 1464 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ITSN2Q9NZM3 1697 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 FSD2A1L4K1 749 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 BMS1Q14692 1282 aaKnown RBP13.27□□□□□ -0.28
TCOF1-211ENST00000513346 NME9Q86XW9 330 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 DISP1Q96F81 1524 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 NFE2L2Q16236 605 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 GDPD2Q9HCC8 539 aa13.27□□□□□ -0.28
TCOF1-211ENST00000513346 RALGAPBQ86X10 1494 aa13.27□□□□□ -0.29
TCOF1-211ENST00000513346 HCLS1P14317 486 aaPredicted RBP13.27□□□□□ -0.29
TCOF1-211ENST00000513346 TTC12Q9H892 705 aaPredicted RBP13.27□□□□□ -0.29
TCOF1-211ENST00000513346 NEMFO60524 1076 aa13.27□□□□□ -0.29
TCOF1-211ENST00000513346 GTF2F1P35269 517 aaKnown RBP eCLIP13.27□□□□□ -0.29
TCOF1-211ENST00000513346 CEP57L1Q8IYX8 460 aa13.27□□□□□ -0.29
TCOF1-211ENST00000513346 ZNF396Q96N95 335 aaPredicted RBP13.27□□□□□ -0.29
TCOF1-211ENST00000513346 UPF3BQ9BZI7 483 aaKnown RBP13.27□□□□□ -0.29
TCOF1-211ENST00000513346 FAM177BA6PVY3 158 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 USP8P40818 1118 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 CEP170Q5SW79 1584 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 CLIP2Q9UDT6 1046 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 MSH6P52701 1360 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 CABP4P57796 275 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 TRIM34Q9BYJ4 488 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 SPG7Q9UQ90 795 aa13.26□□□□□ -0.29
TCOF1-211ENST00000513346 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.29
TCOF1-211ENST00000513346 RAD21O60216 631 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 ANKRD1Q15327 319 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 EMILIN1Q9Y6C2 1016 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 PRAG1Q86YV5 1406 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 TRIM29Q14134 588 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 CAMK4Q16566 473 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 OGFRQ9NZT2 677 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 PHF8Q9UPP1 1060 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 CEBPZQ03701 1054 aaKnown RBP13.25□□□□□ -0.29
TCOF1-211ENST00000513346 MYRIPQ8NFW9 859 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 IGSF3O75054 1194 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 ZNF445P59923 1031 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 DUOX2Q9NRD8 1548 aa13.25□□□□□ -0.29
TCOF1-211ENST00000513346 WASHC4Q2M389 1173 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 PPP1R9BQ96SB3 815 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 POLR3GO15318 223 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-211ENST00000513346 UBE2HP62256 183 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 CCT4P50991 539 aaKnown RBP13.24□□□□□ -0.29
TCOF1-211ENST00000513346 DCTN1Q14203 1278 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 KIF6Q6ZMV9 814 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 PDRG1Q9NUG6 133 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 ABCC11Q96J66 1382 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 SERPINC1P01008 464 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 CFAP45Q9UL16 551 aa13.24□□□□□ -0.29
TCOF1-211ENST00000513346 NCKAP5LQ9HCH0 1330 aa13.23□□□□□ -0.29
TCOF1-211ENST00000513346 HIP1O00291 1037 aa13.23□□□□□ -0.29
TCOF1-211ENST00000513346 WASLO00401 505 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-211ENST00000513346 CEP135Q66GS9 1140 aa13.23□□□□□ -0.29
TCOF1-211ENST00000513346 FAM177A1Q8N128 213 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-211ENST00000513346 TESK2Q96S53 571 aa13.23□□□□□ -0.29
TCOF1-211ENST00000513346 SCAND2PQ9GZW5 306 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-211ENST00000513346 SFPQP23246 707 aaKnown RBP eCLIP13.22□□□□□ -0.29
TCOF1-211ENST00000513346 AXDND1Q5T1B0 1012 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-211ENST00000513346 ZNF500O60304 480 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-211ENST00000513346 SKIDA1Q1XH10 827 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 CBFA2T2O43439 604 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 DHX16O60231 1041 aaKnown RBP13.22□□□□□ -0.29
TCOF1-211ENST00000513346 ME1P48163 572 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 STK38Q15208 465 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 NFXL1Q6ZNB6 911 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 RALYLQ86SE5 291 aaKnown RBP13.22□□□□□ -0.29
TCOF1-211ENST00000513346 ABCA5Q8WWZ7 1642 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 NGLY1Q96IV0 654 aa13.22□□□□□ -0.29
TCOF1-211ENST00000513346 TMX3Q96JJ7 454 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 FSD1Q9BTV5 496 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 PZPP20742 1482 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 MX1P20591 662 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 MCM10Q7L590 875 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 JAKMIP1Q96N16 626 aaKnown RBP13.21□□□□□ -0.29
TCOF1-211ENST00000513346 TRMT1Q9NXH9 659 aaKnown RBP13.21□□□□□ -0.29
TCOF1-211ENST00000513346 MIS18AQ9NYP9 233 aa13.21□□□□□ -0.29
TCOF1-211ENST00000513346 ERICH2A1L162 156 aa13.21□□□□□ -0.3
TCOF1-211ENST00000513346 RLBP1P12271 317 aa13.21□□□□□ -0.3
TCOF1-211ENST00000513346 TTC22Q5TAA0 569 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 SMARCA5O60264 1052 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-211ENST00000513346 FERMT3Q86UX7 667 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 URI1O94763 535 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-211ENST00000513346 CCDC83Q8IWF9 413 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 DDX19AQ9NUU7 478 aaKnown RBP13.2□□□□□ -0.3
TCOF1-211ENST00000513346 NEO1Q92859 1461 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 CCDC171Q6TFL3 1326 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 KIAA0754O94854 1291 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 FBLN1P23142 703 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 TTLL5Q6EMB2 1281 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 CKAP2LQ8IYA6 745 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 CCDC102AQ96A19 550 aa13.2□□□□□ -0.3
TCOF1-211ENST00000513346 CDR1P51861 262 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 GIMAP6Q6P9H5 292 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 BLOC1S2Q6QNY1 142 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 TXLNBQ8N3L3 684 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms