RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ATP6V1AP38606 617 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 SMC1AQ14683 1233 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 EIF3CQ99613 913 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 WDR7Q9Y4E6 1490 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 IRF6O14896 467 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 PPP2R5AQ15172 486 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 HSP90AB3PQ58FF7 597 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 FILIP1Q7Z7B0 1213 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 ZNF526Q8TF50 670 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 UPF3BQ9BZI7 483 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 ZNF75DP51815 510 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 FOXR1Q6PIV2 292 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 UBXN4Q92575 508 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 CCDC171Q6TFL3 1326 aa14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 OTUD7AQ8TE49 926 aaPredicted RBP14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 PDRG1Q9NUG6 133 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 GRIN2AQ12879 1464 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 GRIPAP1Q4V328 841 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 PLEKHG2Q9H7P9 1386 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 SDSP20132 328 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 ACTN2P35609 894 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 TTC22Q5TAA0 569 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 MCTP2Q6DN12 878 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 ADAM21Q9UKJ8 722 aa14.24□□□□□ -0.13
LIMCH1-213ENST00000511496 REXO1L1PQ8IX06 675 aa14.23□□□□□ -0.13
LIMCH1-213ENST00000511496 EPC1Q9H2F5 836 aa14.23□□□□□ -0.13
LIMCH1-213ENST00000511496 ASXL1Q8IXJ9 1541 aa14.23□□□□□ -0.13
LIMCH1-213ENST00000511496 ANO6Q4KMQ2 910 aa14.23□□□□□ -0.13
LIMCH1-213ENST00000511496 ANKRD50Q9ULJ7 1429 aa14.23□□□□□ -0.13
LIMCH1-213ENST00000511496 U2AF1L5P0DN76 240 aaPredicted RBP14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 U2AF1Q01081 240 aaKnown RBP eCLIP14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 MNS1Q8NEH6 495 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 SGSM3Q96HU1 749 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 PPIP5K1Q6PFW1 1433 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 MNAT1P51948 309 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 LRCH2Q5VUJ6 765 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 PPM1EQ8WY54 764 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 CBX8Q9HC52 389 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 CDK13Q14004 1512 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 ZNF853P0CG23 659 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 TYRO3Q06418 890 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 NYAP1Q6ZVC0 841 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 LRRC8AQ8IWT6 810 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 CFAP44Q96MT7 982 aa14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 LARP6Q9BRS8 491 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-213ENST00000511496 ZRANB2O95218 330 aaKnown RBP eCLIP14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 RPAINQ86UA6 219 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 SIRT2Q8IXJ6 389 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 TCHHQ07283 1943 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 CWC27Q6UX04 472 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 MORC1Q86VD1 984 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 DNAAF4Q8WXU2 420 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 MED4Q9NPJ6 270 aa14.21□□□□□ -0.13
LIMCH1-213ENST00000511496 KIF1CO43896 1103 aaKnown RBP14.21□□□□□ -0.14
LIMCH1-213ENST00000511496 SASH3O75995 380 aa14.21□□□□□ -0.14
LIMCH1-213ENST00000511496 CUL4AQ13619 759 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 MRVI1Q9Y6F6 885 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 KDM5DQ9BY66 1539 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 SHROOM2Q13796 1616 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 ERC2O15083 957 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 MICALL1Q8N3F8 863 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 PHF23Q9BUL5 403 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 PLEKHA4Q9H4M7 779 aa14.2□□□□□ -0.14
LIMCH1-213ENST00000511496 MCM2P49736 904 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 GSCP56915 257 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 MAP2K1Q02750 393 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 SNW1Q13573 536 aaKnown RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 GNL2Q13823 731 aaKnown RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 MAP3K11Q16584 847 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 CFAP74Q9C0B2 1584 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 SAMD9Q5K651 1589 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 ZBTB7BO15156 539 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 DNM1Q05193 864 aaKnown RBP14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 BIRC2Q13490 618 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 MMS22LQ6ZRQ5 1243 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 USP16Q9Y5T5 823 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 IVLP07476 585 aa14.19□□□□□ -0.14
LIMCH1-213ENST00000511496 CCDC141Q6ZP82 1450 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 CCDC189A1A4V9 331 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 CCDC69A6NI79 296 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 CCAR2Q8N163 923 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 INTS4Q96HW7 963 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 PALD1Q9ULE6 856 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 PLA2G4DQ86XP0 818 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 HOMER1Q86YM7 354 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 CEP120Q8N960 986 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 EXOC4Q96A65 974 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 RAD50Q92878 1312 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 ZSCAN22P10073 491 aaPredicted RBP14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 SEMA3FQ13275 785 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 CARD14Q9BXL6 1004 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 NUP62CLQ9H1M0 184 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 VPS18Q9P253 973 aa14.18□□□□□ -0.14
LIMCH1-213ENST00000511496 TMEM87AQ8NBN3 555 aa14.17□□□□□ -0.14
LIMCH1-213ENST00000511496 ORC3Q9UBD5 711 aaPredicted RBP14.17□□□□□ -0.14
LIMCH1-213ENST00000511496 DNMT1P26358 1616 aaKnown RBP14.17□□□□□ -0.14
LIMCH1-213ENST00000511496 KIF2AO00139 706 aaPredicted RBP14.17□□□□□ -0.14
LIMCH1-213ENST00000511496 ZNF165P49910 485 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms