RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 SSFA2P28290 1259 aa20.93■□□□□ 0.94
TPM3-219ENST00000509409 MTHFSP49914 203 aa20.93■□□□□ 0.94
TPM3-219ENST00000509409 AMIGO3Q86WK7 504 aa20.93■□□□□ 0.94
TPM3-219ENST00000509409 TOGARAM1Q9Y4F4 1720 aa20.92■□□□□ 0.94
TPM3-219ENST00000509409 AMER1Q5JTC6 1135 aaPredicted RBP20.92■□□□□ 0.94
TPM3-219ENST00000509409 PLEKHG2Q9H7P9 1386 aa20.92■□□□□ 0.94
TPM3-219ENST00000509409 ITGB4P16144 1822 aa20.92■□□□□ 0.94
TPM3-219ENST00000509409 C5P01031 1676 aa20.91■□□□□ 0.94
TPM3-219ENST00000509409 IL13P35225 146 aa20.91■□□□□ 0.94
TPM3-219ENST00000509409 CD2APQ9Y5K6 639 aa20.91■□□□□ 0.94
TPM3-219ENST00000509409 GRIN3BO60391 1043 aa20.9■□□□□ 0.94
TPM3-219ENST00000509409 CNGB1Q14028 1251 aaPredicted RBP20.89■□□□□ 0.93
TPM3-219ENST00000509409 CC2D1BQ5T0F9 858 aaKnown RBP20.89■□□□□ 0.93
TPM3-219ENST00000509409 C4BP0C0L5 1744 aa20.89■□□□□ 0.93
TPM3-219ENST00000509409 TRAPPC3LQ5T215 181 aa20.88■□□□□ 0.93
TPM3-219ENST00000509409 RTCBQ9Y3I0 505 aaKnown RBP20.88■□□□□ 0.93
TPM3-219ENST00000509409 YBX3P16989 372 aaKnown RBP eCLIP20.87■□□□□ 0.93
TPM3-219ENST00000509409 PTCD1O75127 700 aaKnown RBP20.86■□□□□ 0.93
TPM3-219ENST00000509409 NFATC2IPQ8NCF5 419 aa20.86■□□□□ 0.93
TPM3-219ENST00000509409 SLC4A9Q96Q91 983 aa20.86■□□□□ 0.93
TPM3-219ENST00000509409 COL24A1Q17RW2 1714 aa20.86■□□□□ 0.93
TPM3-219ENST00000509409 TAF1LQ8IZX4 1826 aa20.85■□□□□ 0.93
TPM3-219ENST00000509409 PER1O15534 1290 aaPredicted RBP20.84■□□□□ 0.93
TPM3-219ENST00000509409 HMOX1P09601 288 aa20.84■□□□□ 0.93
TPM3-219ENST00000509409 RC3H1Q5TC82 1133 aaKnown RBP20.84■□□□□ 0.93
TPM3-219ENST00000509409 DIAPH1O60610 1272 aaKnown RBP20.83■□□□□ 0.93
TPM3-219ENST00000509409 AKAP4Q5JQC9 854 aa20.83■□□□□ 0.93
TPM3-219ENST00000509409 KDM6AO15550 1401 aaPredicted RBP20.83■□□□□ 0.93
TPM3-219ENST00000509409 POTEDQ86YR6 584 aa20.82■□□□□ 0.92
TPM3-219ENST00000509409 RPS6KA4O75676 772 aa20.81■□□□□ 0.92
TPM3-219ENST00000509409 MMP10P09238 476 aa20.81■□□□□ 0.92
TPM3-219ENST00000509409 RFC4P35249 363 aa20.81■□□□□ 0.92
TPM3-219ENST00000509409 ARHGEF1Q92888 912 aaKnown RBP20.81■□□□□ 0.92
TPM3-219ENST00000509409 WWC3Q9ULE0 1092 aa20.81■□□□□ 0.92
TPM3-219ENST00000509409 KDRP35968 1356 aa20.81■□□□□ 0.92
TPM3-219ENST00000509409 NLGN1Q8N2Q7 840 aa20.8■□□□□ 0.92
TPM3-219ENST00000509409 ADRA2BP18089 450 aa20.79■□□□□ 0.92
TPM3-219ENST00000509409 LGR6Q9HBX8 967 aa20.79■□□□□ 0.92
TPM3-219ENST00000509409 CNTNAP4Q9C0A0 1308 aa20.78■□□□□ 0.92
TPM3-219ENST00000509409 CHD4Q14839 1912 aa20.78■□□□□ 0.92
TPM3-219ENST00000509409 GOLGB1Q14789 3259 aaKnown RBP20.78■□□□□ 0.92
TPM3-219ENST00000509409 UBR3Q6ZT12 1888 aa20.77■□□□□ 0.92
TPM3-219ENST00000509409 RNMTO43148 476 aaKnown RBP20.77■□□□□ 0.92
TPM3-219ENST00000509409 SLC52A2Q9HAB3 445 aa20.77■□□□□ 0.92
TPM3-219ENST00000509409 U2SURPO15042 1029 aaKnown RBP20.76■□□□□ 0.91
TPM3-219ENST00000509409 CRKLP46109 303 aaKnown RBP20.76■□□□□ 0.91
TPM3-219ENST00000509409 MTHFSDQ2M296 383 aaKnown RBP20.76■□□□□ 0.91
TPM3-219ENST00000509409 PARP3Q9Y6F1 533 aa20.75■□□□□ 0.91
TPM3-219ENST00000509409 GYS1P13807 737 aa20.74■□□□□ 0.91
TPM3-219ENST00000509409 C1QTNF8P60827 252 aa20.74■□□□□ 0.91
TPM3-219ENST00000509409 GIGYF1O75420 1035 aaPredicted RBP20.73■□□□□ 0.91
TPM3-219ENST00000509409 SLC39A6Q13433 755 aa20.73■□□□□ 0.91
TPM3-219ENST00000509409 CCDC87Q9NVE4 849 aa20.73■□□□□ 0.91
TPM3-219ENST00000509409 DNAJC10Q8IXB1 793 aa20.72■□□□□ 0.91
TPM3-219ENST00000509409 TGFB2P61812 414 aa20.71■□□□□ 0.91
TPM3-219ENST00000509409 SRP68Q9UHB9 627 aaKnown RBP20.71■□□□□ 0.91
TPM3-219ENST00000509409 NPC1L1Q9UHC9 1359 aa20.71■□□□□ 0.91
TPM3-219ENST00000509409 A0A0G2JLW4 131 aa20.7■□□□□ 0.9
TPM3-219ENST00000509409 INTS5Q6P9B9 1019 aaKnown RBP20.69■□□□□ 0.9
TPM3-219ENST00000509409 SENP3-EIF4A1A0A087X0R7 540 aa20.68■□□□□ 0.9
TPM3-219ENST00000509409 ZPR1O75312 459 aa20.68■□□□□ 0.9
TPM3-219ENST00000509409 CFAP53Q96M91 514 aa20.68■□□□□ 0.9
TPM3-219ENST00000509409 BCS1LQ9Y276 419 aa20.68■□□□□ 0.9
TPM3-219ENST00000509409 FKBP8Q14318 412 aa20.67■□□□□ 0.9
TPM3-219ENST00000509409 GAS2L2Q8NHY3 880 aa20.67■□□□□ 0.9
TPM3-219ENST00000509409 DPEP1P16444 411 aa20.66■□□□□ 0.9
TPM3-219ENST00000509409 TTC5Q8N0Z6 440 aa20.66■□□□□ 0.9
TPM3-219ENST00000509409 ZNF526Q8TF50 670 aaPredicted RBP20.66■□□□□ 0.9
TPM3-219ENST00000509409 ZNF831Q5JPB2 1677 aa20.65■□□□□ 0.9
TPM3-219ENST00000509409 USP42Q9H9J4 1324 aaKnown RBP20.65■□□□□ 0.9
TPM3-219ENST00000509409 GNAT3A8MTJ3 354 aa20.65■□□□□ 0.9
TPM3-219ENST00000509409 CYP19A1P11511 503 aaPredicted RBP20.65■□□□□ 0.9
TPM3-219ENST00000509409 TEFQ10587 303 aa20.65■□□□□ 0.9
TPM3-219ENST00000509409 GPBP1L1Q9HC44 474 aaPredicted RBP20.65■□□□□ 0.9
TPM3-219ENST00000509409 ATP10DQ9P241 1426 aa20.64■□□□□ 0.89
TPM3-219ENST00000509409 FCHSD2O94868 740 aa20.64■□□□□ 0.89
TPM3-219ENST00000509409 USPL1Q5W0Q7 1092 aa20.64■□□□□ 0.89
TPM3-219ENST00000509409 NUDCQ9Y266 331 aa20.64■□□□□ 0.89
TPM3-219ENST00000509409 CICQ96RK0 1608 aaPredicted RBP20.64■□□□□ 0.89
TPM3-219ENST00000509409 ARHGAP27Q6ZUM4 889 aa20.63■□□□□ 0.89
TPM3-219ENST00000509409 VSIG10Q8N0Z9 540 aa20.63■□□□□ 0.89
TPM3-219ENST00000509409 SOS1Q07889 1333 aaPredicted RBP20.62■□□□□ 0.89
TPM3-219ENST00000509409 CANXP27824 592 aaKnown RBP20.62■□□□□ 0.89
TPM3-219ENST00000509409 IL17REQ8NFR9 667 aa20.62■□□□□ 0.89
TPM3-219ENST00000509409 PXDNLA1KZ92 1463 aa20.62■□□□□ 0.89
TPM3-219ENST00000509409 SCN11AQ9UI33 1791 aa20.62■□□□□ 0.89
TPM3-219ENST00000509409 COL5A3P25940 1745 aaPredicted RBP20.61■□□□□ 0.89
TPM3-219ENST00000509409 MYH14Q7Z406 1995 aaKnown RBP20.61■□□□□ 0.89
TPM3-219ENST00000509409 STARD3NLO95772 234 aa20.61■□□□□ 0.89
TPM3-219ENST00000509409 DDR1Q08345 913 aa20.61■□□□□ 0.89
TPM3-219ENST00000509409 ZBTB1Q9Y2K1 713 aa20.61■□□□□ 0.89
TPM3-219ENST00000509409 C10orf71Q711Q0 1435 aa20.61■□□□□ 0.89
TPM3-219ENST00000509409 TM4SF1P30408 202 aa20.6■□□□□ 0.89
TPM3-219ENST00000509409 PRKAR2BP31323 418 aa20.6■□□□□ 0.89
TPM3-219ENST00000509409 PIM2Q9P1W9 311 aa20.6■□□□□ 0.89
TPM3-219ENST00000509409 NARFQ9UHQ1 456 aa20.6■□□□□ 0.89
TPM3-219ENST00000509409 COL3A1P02461 1466 aaPredicted RBP20.59■□□□□ 0.89
TPM3-219ENST00000509409 U2AF1L5P0DN76 240 aaPredicted RBP20.59■□□□□ 0.89
TPM3-219ENST00000509409 U2AF1Q01081 240 aaKnown RBP eCLIP20.59■□□□□ 0.897e-10■■□□□ 13
TPM3-219ENST00000509409 PHACTR3Q96KR7 559 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 287.5 ms