RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 C9orf78Q9NZ63 289 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 RBM25P49756 843 aaKnown RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 TMCO4Q5TGY1 634 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 LARP1Q6PKG0 1096 aaKnown RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 TCIRG1Q13488 830 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 SULT6B1Q6IMI4 303 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 DDX46Q7L014 1031 aaKnown RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 TMX1Q9H3N1 280 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 TMOD2Q9NZR1 351 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 ADGRL2O95490 1459 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 PTCH1Q13635 1447 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 MARCH6O60337 910 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 PPP1R42Q7Z4L9 355 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 ATP7BP35670 1465 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 GCP02774 474 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 PRIM1P49642 420 aaKnown RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 PNISRQ8TF01 805 aaKnown RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 TEX13AQ9BXU3 409 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-208ENST00000508342 HDAC5Q9UQL6 1122 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 KIAA1210Q9ULL0 1709 aa3.67□□□□□ -1.82
NEDD4-208ENST00000508342 GOLGA6L22H0YM25 854 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 KCNQ2O43526 872 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 CHAF1AQ13111 956 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 C2CD5Q86YS7 1000 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 ZSCAN29Q8IWY8 852 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 FRAT1Q92837 279 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 TMEM131LA2VDJ0 1609 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC7Q96M83 1385 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 SHPRHQ149N8 1683 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 PLCH1Q4KWH8 1693 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 IGHMBP2P38935 993 aaKnown RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 IL27Q8NEV9 243 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 BRD4O60885 1362 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 KIAA0232Q92628 1395 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 C6orf229H3BNL8 230 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 KIF22Q14807 665 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 PIK3C2GO75747 1445 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 NRDCO43847 1150 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 SLC4A3P48751 1232 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 ILDR2Q71H61 639 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 METP08581 1390 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 KIAA2012Q0VF49 1180 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 GNL3LQ9NVN8 582 aaKnown RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 SIGLEC1Q9BZZ2 1709 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 PARP4Q9UKK3 1724 aaKnown RBP3.66□□□□□ -1.82
NEDD4-208ENST00000508342 NINLQ9Y2I6 1382 aa3.66□□□□□ -1.82
NEDD4-208ENST00000508342 PTMSP20962 102 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 CALRP27797 417 aaKnown RBP3.65□□□□□ -1.82
NEDD4-208ENST00000508342 SOGA3Q5TF21 947 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 NUTM1Q86Y26 1132 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC136Q96JN2 1154 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 MPHOSPH8Q99549 860 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 LTN1O94822 1766 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 NBPF1Q3BBV0 1214 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 NIM1KQ8IY84 436 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 DCPSQ96C86 337 aaKnown RBP3.65□□□□□ -1.82
NEDD4-208ENST00000508342 MARF1Q9Y4F3 1742 aaKnown RBP3.65□□□□□ -1.82
NEDD4-208ENST00000508342 OVOS2A0A0G2JMS6 1433 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 OVOS2A0A0J9YW53 1432 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 OVOS2Q6IE36 1432 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 GOLGA6L4A6NEF3 574 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 RIMBP2O15034 1052 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 RIPK4P57078 832 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 SLC27A3Q5K4L6 730 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 L1TD1Q5T7N2 865 aaKnown RBP3.65□□□□□ -1.82
NEDD4-208ENST00000508342 POTEAQ6S8J7 498 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 SUPT20HQ8NEM7 779 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 CCDC97Q96F63 343 aaPredicted RBP3.65□□□□□ -1.82
NEDD4-208ENST00000508342 SLC12A5Q9H2X9 1139 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 TTC21BQ7Z4L5 1316 aa3.65□□□□□ -1.82
NEDD4-208ENST00000508342 UPF1Q92900 1129 aaKnown RBP eCLIP3.65□□□□□ -1.83
NEDD4-208ENST00000508342 MS4A1P11836 297 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 CEP89Q96ST8 783 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 CRBNQ96SW2 442 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 RNF181Q9P0P0 153 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 SPATA31A3Q5VYP0 1347 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 E9PSI1 815 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 HSP90AB3PQ58FF7 597 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 RRAGCQ9HB90 399 aa3.65□□□□□ -1.83
NEDD4-208ENST00000508342 MPHOSPH10O00566 681 aaKnown RBP3.64□□□□□ -1.83
NEDD4-208ENST00000508342 RGL2O15211 777 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 IKQ13123 557 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-208ENST00000508342 WWC1Q8IX03 1113 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 FMNL2Q96PY5 1086 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 PIK3C2AO00443 1686 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 PLEKHH1Q9ULM0 1364 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 ALDH1B1P30837 517 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 TTC39AQ5SRH9 613 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 DEFB132Q7Z7B7 95 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 CNBD1Q8NA66 436 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 TRPM1Q7Z4N2 1603 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 VWDEQ8N2E2 1590 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 FMN2Q9NZ56 1722 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 CRB1P82279 1406 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 ROBO2Q9HCK4 1378 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 GPTP24298 496 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 RALBP1Q15311 655 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 CCDC30Q5VVM6 783 aa3.64□□□□□ -1.83
NEDD4-208ENST00000508342 DZIP3Q86Y13 1208 aaKnown RBP3.64□□□□□ -1.83
NEDD4-208ENST00000508342 POLR3AO14802 1390 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms