RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 TAOK2Q9UL54 1235 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 SPG7Q9UQ90 795 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 PCDH11XQ9BZA7 1347 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 PCDH11YQ9BZA8 1340 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 IRX6P78412 446 aaPredicted RBP13.48□□□□□ -0.25
TPM3-217ENST00000504663 UNC5CLQ8IV45 518 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 IFNL2Q8IZJ0 200 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 ZCRB1Q8TBF4 217 aaKnown RBP13.48□□□□□ -0.25
TPM3-217ENST00000504663 BABAM1Q9NWV8 329 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 MIS18AQ9NYP9 233 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 LAS1LQ9Y4W2 734 aaKnown RBP13.48□□□□□ -0.25
TPM3-217ENST00000504663 KCPQ6ZWJ8 1503 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 LAMB4A4D0S4 1761 aa13.48□□□□□ -0.25
TPM3-217ENST00000504663 VPS72Q15906 364 aa13.47□□□□□ -0.25
TPM3-217ENST00000504663 C1orf141Q5JVX7 400 aa13.47□□□□□ -0.25
TPM3-217ENST00000504663 SSH1Q8WYL5 1049 aa13.47□□□□□ -0.25
TPM3-217ENST00000504663 C8orf37Q96NL8 207 aa13.47□□□□□ -0.25
TPM3-217ENST00000504663 N4BP2Q86UW6 1770 aaPredicted RBP13.46□□□□□ -0.25
TPM3-217ENST00000504663 KCNQ3O43525 872 aa13.46□□□□□ -0.25
TPM3-217ENST00000504663 PLIN1O60240 522 aa13.46□□□□□ -0.25
TPM3-217ENST00000504663 TAF7Q15545 349 aaPredicted RBP13.46□□□□□ -0.25
TPM3-217ENST00000504663 C20orf194Q5TEA3 1177 aa13.46□□□□□ -0.25
TPM3-217ENST00000504663 BARGINQ6ZT62 677 aa13.46□□□□□ -0.25
TPM3-217ENST00000504663 THRAP3Q9Y2W1 955 aaKnown RBP13.46□□□□□ -0.25
TPM3-217ENST00000504663 RGS12O14924 1447 aa13.46□□□□□ -0.26
TPM3-217ENST00000504663 BRPF1P55201 1214 aaPredicted RBP13.45□□□□□ -0.26
TPM3-217ENST00000504663 DCAF5Q96JK2 942 aa13.45□□□□□ -0.26
TPM3-217ENST00000504663 SLC52A2Q9HAB3 445 aa13.45□□□□□ -0.26
TPM3-217ENST00000504663 USP35Q9P2H5 1018 aa13.45□□□□□ -0.26
TPM3-217ENST00000504663 TSPYL4Q9UJ04 414 aa13.45□□□□□ -0.26
TPM3-217ENST00000504663 TNNQ9UQP3 1299 aa13.45□□□□□ -0.26
TPM3-217ENST00000504663 TWISTNBQ3B726 338 aaPredicted RBP13.44□□□□□ -0.26
TPM3-217ENST00000504663 BCL2L13Q9BXK5 485 aa13.44□□□□□ -0.26
TPM3-217ENST00000504663 CACNA1FO60840 1977 aa13.43□□□□□ -0.26
TPM3-217ENST00000504663 AFF2P51816 1311 aa13.43□□□□□ -0.26
TPM3-217ENST00000504663 CICQ96RK0 1608 aaPredicted RBP13.43□□□□□ -0.26
TPM3-217ENST00000504663 EIF4A1P60842 406 aaKnown RBP13.43□□□□□ -0.26
TPM3-217ENST00000504663 ALDH1L2Q3SY69 923 aa13.43□□□□□ -0.26
TPM3-217ENST00000504663 MRPL50Q8N5N7 158 aaKnown RBP13.43□□□□□ -0.26
TPM3-217ENST00000504663 ZNF428Q96B54 188 aa13.43□□□□□ -0.26
TPM3-217ENST00000504663 HSP90AB1P08238 724 aaKnown RBP13.42□□□□□ -0.26
TPM3-217ENST00000504663 NGLY1Q96IV0 654 aa13.42□□□□□ -0.26
TPM3-217ENST00000504663 ELL2O00472 640 aaPredicted RBP13.41□□□□□ -0.26
TPM3-217ENST00000504663 TEFQ10587 303 aa13.41□□□□□ -0.26
TPM3-217ENST00000504663 CDCA7Q9BWT1 371 aaPredicted RBP13.41□□□□□ -0.26
TPM3-217ENST00000504663 USP21Q9UK80 565 aa13.41□□□□□ -0.26
TPM3-217ENST00000504663 TJP1Q07157 1748 aa13.41□□□□□ -0.26
TPM3-217ENST00000504663 RLBP1P12271 317 aa13.4□□□□□ -0.26
TPM3-217ENST00000504663 SMC4Q9NTJ3 1288 aa13.4□□□□□ -0.26
TPM3-217ENST00000504663 BRWD3Q6RI45 1802 aa13.4□□□□□ -0.26
TPM3-217ENST00000504663 NHSQ6T4R5 1651 aa13.4□□□□□ -0.26
TPM3-217ENST00000504663 SOS1Q07889 1333 aaPredicted RBP13.39□□□□□ -0.27
TPM3-217ENST00000504663 BCL9O00512 1426 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 SBF2Q86WG5 1849 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 BTBD11A6QL63 1104 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 ERVV-2B6SEH9 535 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 ERICH6BQ5W0A0 696 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 MARCH10Q8NA82 808 aaPredicted RBP13.39□□□□□ -0.27
TPM3-217ENST00000504663 NFATC2IPQ8NCF5 419 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
TPM3-217ENST00000504663 CRBNQ96SW2 442 aa13.39□□□□□ -0.27
TPM3-217ENST00000504663 NEFLP07196 543 aa13.38□□□□□ -0.27
TPM3-217ENST00000504663 SLC39A6Q13433 755 aa13.38□□□□□ -0.27
TPM3-217ENST00000504663 ZNF790Q6PG37 636 aa13.38□□□□□ -0.27
TPM3-217ENST00000504663 EXOC6Q8TAG9 804 aa13.38□□□□□ -0.27
TPM3-217ENST00000504663 PRAMEF22A3QJZ6 481 aa13.37□□□□□ -0.27
TPM3-217ENST00000504663 DCAF8L1A6NGE4 600 aa13.37□□□□□ -0.27
TPM3-217ENST00000504663 TCERG1O14776 1098 aaKnown RBP13.37□□□□□ -0.27
TPM3-217ENST00000504663 HOXB7P09629 217 aa13.37□□□□□ -0.27
TPM3-217ENST00000504663 TRIM27P14373 513 aa13.37□□□□□ -0.27
TPM3-217ENST00000504663 FAM98CQ17RN3 349 aaKnown RBP13.37□□□□□ -0.27
TPM3-217ENST00000504663 RREB1Q92766 1687 aa13.37□□□□□ -0.27
TPM3-217ENST00000504663 ONECUT3O60422 494 aaPredicted RBP13.36□□□□□ -0.27
TPM3-217ENST00000504663 GIGYF1O75420 1035 aaPredicted RBP13.36□□□□□ -0.27
TPM3-217ENST00000504663 PDE3AQ14432 1141 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 DDB1Q16531 1140 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 PANK1Q8TE04 598 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 FBXO41Q8TF61 875 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 ZNF496Q96IT1 587 aaPredicted RBP13.36□□□□□ -0.27
TPM3-217ENST00000504663 GJD4Q96KN9 370 aaPredicted RBP13.36□□□□□ -0.27
TPM3-217ENST00000504663 NOB1Q9ULX3 412 aaKnown RBP13.36□□□□□ -0.27
TPM3-217ENST00000504663 ZNF831Q5JPB2 1677 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 ABCC4O15439 1325 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 KIF16BQ96L93 1317 aa13.36□□□□□ -0.27
TPM3-217ENST00000504663 EXOC5O00471 708 aa13.35□□□□□ -0.27
TPM3-217ENST00000504663 CABP4P57796 275 aa13.35□□□□□ -0.27
TPM3-217ENST00000504663 MEX3CQ5U5Q3 659 aaKnown RBP13.35□□□□□ -0.27
TPM3-217ENST00000504663 ATF7IPQ6VMQ6 1270 aa13.35□□□□□ -0.27
TPM3-217ENST00000504663 G2E3Q7L622 706 aa13.35□□□□□ -0.27
TPM3-217ENST00000504663 BTAF1O14981 1849 aa13.34□□□□□ -0.27
TPM3-217ENST00000504663 COL5A3P25940 1745 aaPredicted RBP13.34□□□□□ -0.27
TPM3-217ENST00000504663 ZKSCAN2Q63HK3 967 aa13.34□□□□□ -0.27
TPM3-217ENST00000504663 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.34□□□□□ -0.27
TPM3-217ENST00000504663 PIGBQ92521 554 aa13.34□□□□□ -0.27
TPM3-217ENST00000504663 NUP188Q5SRE5 1749 aa13.33□□□□□ -0.27
TPM3-217ENST00000504663 LRP10Q7Z4F1 713 aa13.33□□□□□ -0.28
TPM3-217ENST00000504663 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
TPM3-217ENST00000504663 ARHGAP45Q92619 1136 aa13.33□□□□□ -0.28
TPM3-217ENST00000504663 FRAT1Q92837 279 aaPredicted RBP13.33□□□□□ -0.28
TPM3-217ENST00000504663 TRPC5Q9UL62 973 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms