RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 MMP10P09238 476 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 ATP6V1AP38606 617 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 SIK1P57059 783 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 ITPK1Q13572 414 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 NMRK2Q9NPI5 230 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 ASAP1Q9ULH1 1129 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 EMILIN1Q9Y6C2 1016 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 FLT4P35916 1363 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 PXDNLA1KZ92 1463 aa12.78□□□□□ -0.36
CCDC171-209ENST00000498725 CAPN15O75808 1086 aa12.77□□□□□ -0.37
CCDC171-209ENST00000498725 HTRA3P83110 453 aa12.77□□□□□ -0.37
CCDC171-209ENST00000498725 TMOD3Q9NYL9 352 aa12.77□□□□□ -0.37
CCDC171-209ENST00000498725 TOMM70O94826 608 aa12.76□□□□□ -0.37
CCDC171-209ENST00000498725 SPG7Q9UQ90 795 aa12.76□□□□□ -0.37
CCDC171-209ENST00000498725 BRCA1P38398 1863 aaKnown RBP12.76□□□□□ -0.37
CCDC171-209ENST00000498725 FCHSD2O94868 740 aa12.75□□□□□ -0.37
CCDC171-209ENST00000498725 DNAJC5GQ8N7S2 189 aa12.75□□□□□ -0.37
CCDC171-209ENST00000498725 C4AP0C0L4 1744 aa12.74□□□□□ -0.37
CCDC171-209ENST00000498725 C16orf71Q8IYS4 520 aaPredicted RBP12.74□□□□□ -0.37
CCDC171-209ENST00000498725 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
CCDC171-209ENST00000498725 ARFGEF1Q9Y6D6 1849 aa12.74□□□□□ -0.37
CCDC171-209ENST00000498725 DPEP1P16444 411 aa12.73□□□□□ -0.37
CCDC171-209ENST00000498725 COL5A3P25940 1745 aaPredicted RBP12.73□□□□□ -0.37
CCDC171-209ENST00000498725 ANKRD26Q9UPS8 1709 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 TGFB2P61812 414 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 TMF1P82094 1093 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 NKX1-1Q15270 411 aaPredicted RBP12.72□□□□□ -0.37
CCDC171-209ENST00000498725 TRAPPC3LQ5T215 181 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 C9orf131Q5VYM1 1079 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 ATG3Q9NT62 314 aa12.72□□□□□ -0.37
CCDC171-209ENST00000498725 RTCBQ9Y3I0 505 aaKnown RBP12.72□□□□□ -0.37
CCDC171-209ENST00000498725 C10orf71Q711Q0 1435 aa12.71□□□□□ -0.37
CCDC171-209ENST00000498725 PHKG2P15735 406 aa12.71□□□□□ -0.37
CCDC171-209ENST00000498725 COL13A1Q5TAT6 717 aaPredicted RBP12.71□□□□□ -0.37
CCDC171-209ENST00000498725 EYA1Q99502 592 aa12.71□□□□□ -0.37
CCDC171-209ENST00000498725 CCDC87Q9NVE4 849 aa12.71□□□□□ -0.37
CCDC171-209ENST00000498725 PARP3Q9Y6F1 533 aa12.71□□□□□ -0.37
CCDC171-209ENST00000498725 KCPQ6ZWJ8 1503 aa12.71□□□□□ -0.38
CCDC171-209ENST00000498725 SBF1O95248 1867 aa12.7□□□□□ -0.38
CCDC171-209ENST00000498725 RFC4P35249 363 aa12.7□□□□□ -0.38
CCDC171-209ENST00000498725 IFNL2Q8IZJ0 200 aa12.7□□□□□ -0.38
CCDC171-209ENST00000498725 NLGN1Q8N2Q7 840 aa12.7□□□□□ -0.38
CCDC171-209ENST00000498725 ARHGEF1Q92888 912 aaKnown RBP12.7□□□□□ -0.38
CCDC171-209ENST00000498725 MYH14Q7Z406 1995 aaKnown RBP12.7□□□□□ -0.38
CCDC171-209ENST00000498725 KIF24Q5T7B8 1368 aa12.69□□□□□ -0.38
CCDC171-209ENST00000498725 SLC24A1O60721 1099 aa12.69□□□□□ -0.38
CCDC171-209ENST00000498725 RBM46Q8TBY0 533 aaKnown RBP12.69□□□□□ -0.38
CCDC171-209ENST00000498725 SLC4A9Q96Q91 983 aa12.69□□□□□ -0.38
CCDC171-209ENST00000498725 CARD14Q9BXL6 1004 aa12.69□□□□□ -0.38
CCDC171-209ENST00000498725 RRAGCQ9HB90 399 aa12.69□□□□□ -0.38
CCDC171-209ENST00000498725 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
CCDC171-209ENST00000498725 TNRC6CQ9HCJ0 1690 aaKnown RBP12.69□□□□□ -0.38
CCDC171-209ENST00000498725 CCDC88AQ3V6T2 1871 aa12.68□□□□□ -0.38
CCDC171-209ENST00000498725 GYS1P13807 737 aa12.68□□□□□ -0.38
CCDC171-209ENST00000498725 TNNT2P45379 298 aaPredicted RBP12.68□□□□□ -0.38
CCDC171-209ENST00000498725 KLRG1Q96E93 195 aa12.68□□□□□ -0.38
CCDC171-209ENST00000498725 RNF181Q9P0P0 153 aa12.68□□□□□ -0.38
CCDC171-209ENST00000498725 NCAPD2Q15021 1401 aa12.68□□□□□ -0.38
CCDC171-209ENST00000498725 SRP68Q9UHB9 627 aaKnown RBP12.67□□□□□ -0.38
CCDC171-209ENST00000498725 KDRP35968 1356 aa12.67□□□□□ -0.38
CCDC171-209ENST00000498725 ZNF831Q5JPB2 1677 aa12.67□□□□□ -0.38
CCDC171-209ENST00000498725 PTCD1O75127 700 aaKnown RBP12.66□□□□□ -0.38
CCDC171-209ENST00000498725 KCNA3P22001 575 aa12.66□□□□□ -0.38
CCDC171-209ENST00000498725 TNS4Q8IZW8 715 aa12.66□□□□□ -0.38
CCDC171-209ENST00000498725 POLR3GLQ9BT43 218 aa12.66□□□□□ -0.38
CCDC171-209ENST00000498725 PIM2Q9P1W9 311 aa12.66□□□□□ -0.38
CCDC171-209ENST00000498725 PLEKHG2Q9H7P9 1386 aa12.66□□□□□ -0.38
CCDC171-209ENST00000498725 WASHC2AQ641Q2 1341 aa12.65□□□□□ -0.38
CCDC171-209ENST00000498725 KDM2BQ8NHM5 1336 aa12.65□□□□□ -0.38
CCDC171-209ENST00000498725 RPS6KA4O75676 772 aa12.65□□□□□ -0.38
CCDC171-209ENST00000498725 CHRNA5P30532 468 aa12.65□□□□□ -0.38
CCDC171-209ENST00000498725 DALRD3Q5D0E6 543 aaKnown RBP12.65□□□□□ -0.38
CCDC171-209ENST00000498725 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.38
CCDC171-209ENST00000498725 CABP4P57796 275 aa12.64□□□□□ -0.39
CCDC171-209ENST00000498725 FSTL1Q12841 308 aa12.64□□□□□ -0.39
CCDC171-209ENST00000498725 EIF4A2Q14240 407 aaKnown RBP12.64□□□□□ -0.39
CCDC171-209ENST00000498725 RC3H1Q5TC82 1133 aaKnown RBP12.64□□□□□ -0.39
CCDC171-209ENST00000498725 TJP1Q07157 1748 aa12.64□□□□□ -0.39
CCDC171-209ENST00000498725 TIAM2Q8IVF5 1701 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 AFDNP55196 1824 aaKnown RBP12.63□□□□□ -0.39
CCDC171-209ENST00000498725 RASSF7Q02833 373 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 FKBP8Q14318 412 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 CDCA8Q53HL2 280 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 ZNF530Q6P9A1 599 aaPredicted RBP12.63□□□□□ -0.39
CCDC171-209ENST00000498725 JMYQ8N9B5 988 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 DCAF5Q96JK2 942 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
CCDC171-209ENST00000498725 CNTNAP4Q9C0A0 1308 aa12.62□□□□□ -0.39
CCDC171-209ENST00000498725 ERVV-2B6SEH9 535 aa12.62□□□□□ -0.39
CCDC171-209ENST00000498725 CRKLP46109 303 aaKnown RBP12.62□□□□□ -0.39
CCDC171-209ENST00000498725 DDR1Q08345 913 aa12.62□□□□□ -0.39
CCDC171-209ENST00000498725 VIRMAQ69YN4 1812 aaKnown RBP12.62□□□□□ -0.39
CCDC171-209ENST00000498725 KDM6AO15550 1401 aaPredicted RBP12.61□□□□□ -0.39
CCDC171-209ENST00000498725 PLEKHO1Q53GL0 409 aaPredicted RBP12.6□□□□□ -0.39
CCDC171-209ENST00000498725 SMC1BQ8NDV3 1235 aa12.6□□□□□ -0.39
CCDC171-209ENST00000498725 USP42Q9H9J4 1324 aaKnown RBP12.6□□□□□ -0.39
CCDC171-209ENST00000498725 SCN11AQ9UI33 1791 aa12.59□□□□□ -0.39
CCDC171-209ENST00000498725 ADAMTS7Q9UKP4 1686 aa12.59□□□□□ -0.39
CCDC171-209ENST00000498725 HSP90AB1P08238 724 aaKnown RBP12.59□□□□□ -0.39
CCDC171-209ENST00000498725 MTHFSP49914 203 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms