RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 ABCA6Q8N139 1617 aa8.28□□□□□ -1.08
PTCD3-219ENST00000494323 VARSP26640 1264 aaKnown RBP8.27□□□□□ -1.09
PTCD3-219ENST00000494323 NBPF14Q5TI25 921 aa8.27□□□□□ -1.09
PTCD3-219ENST00000494323 WASF2Q9Y6W5 498 aa8.27□□□□□ -1.09
PTCD3-219ENST00000494323 PTPRTO14522 1441 aa8.27□□□□□ -1.09
PTCD3-219ENST00000494323 ZNF644Q9H582 1327 aaPredicted RBP8.27□□□□□ -1.09
PTCD3-219ENST00000494323 KIDINS220Q9ULH0 1771 aa8.26□□□□□ -1.09
PTCD3-219ENST00000494323 POTECB2RU33 542 aa8.26□□□□□ -1.09
PTCD3-219ENST00000494323 HPS1Q92902 700 aa8.26□□□□□ -1.09
PTCD3-219ENST00000494323 GPSM3Q9Y4H4 160 aa8.26□□□□□ -1.09
PTCD3-219ENST00000494323 ABCC1P33527 1531 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 AGLP35573 1532 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 SOX11P35716 441 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 PDXDC2PQ6P474 469 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 DACH1Q9UI36 760 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 TLL2Q9Y6L7 1015 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 ZNF335Q9H4Z2 1342 aaPredicted RBP8.25□□□□□ -1.09
PTCD3-219ENST00000494323 CCDC18Q5T9S5 1454 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 PREX2Q70Z35 1606 aa8.25□□□□□ -1.09
PTCD3-219ENST00000494323 ITSN2Q9NZM3 1697 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 GPATCH8Q9UKJ3 1502 aaKnown RBP8.24□□□□□ -1.09
PTCD3-219ENST00000494323 CDC42BPAQ5VT25 1732 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 SUPT6HQ7KZ85 1726 aaKnown RBP8.24□□□□□ -1.09
PTCD3-219ENST00000494323 REREQ9P2R6 1566 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 CNTLNQ9NXG0 1405 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 POM121CA8CG34 1229 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 ZBBXA8MT70 800 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 UBAP1LF5GYI3 381 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 PTK2Q05397 1052 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 VAC14Q08AM6 782 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 NR1H3Q13133 447 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 AGERQ15109 404 aa8.24□□□□□ -1.09
PTCD3-219ENST00000494323 CCNB3Q8WWL7 1395 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 SAMD9LQ8IVG5 1584 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 NCOA1Q15788 1441 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 CAMSAP1Q5T5Y3 1602 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 LTBP4Q8N2S1 1624 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 EIF4G2P78344 907 aaKnown RBP eCLIP8.23□□□□□ -1.09
PTCD3-219ENST00000494323 FAM174AQ8TBP5 190 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 CALR3Q96L12 384 aaKnown RBP8.23□□□□□ -1.09
PTCD3-219ENST00000494323 GMPR2Q9P2T1 348 aaKnown RBP8.23□□□□□ -1.09
PTCD3-219ENST00000494323 SERPINA10Q9UK55 444 aa8.23□□□□□ -1.09
PTCD3-219ENST00000494323 FBXO45P0C2W1 286 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 BPHLQ86WA6 291 aaPredicted RBP8.22□□□□□ -1.09
PTCD3-219ENST00000494323 ZNF592Q92610 1267 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 FOXJ1Q92949 421 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 GLMNQ92990 594 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 CCDC97Q96F63 343 aaPredicted RBP8.22□□□□□ -1.09
PTCD3-219ENST00000494323 ATP13A2Q9NQ11 1180 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 SYCP2Q9BX26 1530 aa8.22□□□□□ -1.09
PTCD3-219ENST00000494323 MPNDQ8N594 471 aa8.21□□□□□ -1.1
PTCD3-219ENST00000494323 ZNF775Q96BV0 537 aaPredicted RBP8.21□□□□□ -1.1
PTCD3-219ENST00000494323 NPATQ14207 1427 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 A2MP01023 1474 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 C11orf95C9JLR9 678 aaPredicted RBP8.2□□□□□ -1.1
PTCD3-219ENST00000494323 KIF3BO15066 747 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 SEMA3FQ13275 785 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 HDGFL1Q5TGJ6 251 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 ALG2Q9H553 416 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 CLTCQ00610 1675 aaKnown RBP8.2□□□□□ -1.1
PTCD3-219ENST00000494323 MTUS2Q5JR59 1369 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 PTPRKQ15262 1439 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 KIAA1107Q9UPP5 1409 aa8.2□□□□□ -1.1
PTCD3-219ENST00000494323 FYCO1Q9BQS8 1478 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 MCCD1P59942 119 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-219ENST00000494323 PIP4K2BP78356 416 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 ARID5BQ14865 1188 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 SH3BP5LQ7L8J4 393 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 ARHGAP9Q9BRR9 750 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 SENP2Q9HC62 589 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 ATP7AQ04656 1500 aa8.19□□□□□ -1.1
PTCD3-219ENST00000494323 CAPN5O15484 640 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-219ENST00000494323 NNTQ13423 1086 aa8.18□□□□□ -1.1
PTCD3-219ENST00000494323 ADAMTS19Q8TE59 1207 aa8.18□□□□□ -1.1
PTCD3-219ENST00000494323 ADH1CP00326 375 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 HSPA1LP34931 641 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 C4orf48Q5BLP8 95 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 ZBTB33Q86T24 672 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 WASHC2CQ9Y4E1 1318 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 PLEKHH2Q8IVE3 1493 aa8.17□□□□□ -1.1
PTCD3-219ENST00000494323 MAGEB6P1A0A0J9YX57 407 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 MROH2AA6NES4 1674 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 DHX29Q7Z478 1369 aaKnown RBP8.16□□□□□ -1.1
PTCD3-219ENST00000494323 SH3RF1Q7Z6J0 888 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 ANKLE2Q86XL3 938 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 ADAM32Q8TC27 787 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 CDK15Q96Q40 435 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 OCSTAMPQ9BR26 566 aa8.16□□□□□ -1.1
PTCD3-219ENST00000494323 SPATA31D1Q6ZQQ2 1576 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 IQSEC2Q5JU85 1478 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 MBD5Q9P267 1494 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 TOM1O60784 492 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 KIFC2Q96AC6 838 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 TRIM47Q96LD4 638 aa8.15□□□□□ -1.1
PTCD3-219ENST00000494323 PLXNC1O60486 1568 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 INO80Q9ULG1 1556 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-219ENST00000494323 CEP170BQ9Y4F5 1589 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-219ENST00000494323 PLA2R1Q13018 1463 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 TCOF1Q13428 1488 aaKnown RBP8.14□□□□□ -1.11
PTCD3-219ENST00000494323 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms