RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 TRIM44Q96DX7 344 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 AKAP7Q9P0M2 348 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-207ENST00000493303 MYBL2P10244 700 aa4.34□□□□□ -1.72
CSMD3-207ENST00000493303 CALD1Q05682 793 aaKnown RBP4.34□□□□□ -1.72
CSMD3-207ENST00000493303 GRIPAP1Q4V328 841 aa4.34□□□□□ -1.72
CSMD3-207ENST00000493303 GORABQ5T7V8 394 aa4.34□□□□□ -1.72
CSMD3-207ENST00000493303 SUGP1Q8IWZ8 645 aaKnown RBP4.34□□□□□ -1.72
CSMD3-207ENST00000493303 LRRC45Q96CN5 670 aa4.34□□□□□ -1.72
CSMD3-207ENST00000493303 MYD88Q99836 296 aa4.34□□□□□ -1.72
CSMD3-207ENST00000493303 CNOT7Q9UIV1 285 aaKnown RBP4.34□□□□□ -1.72
CSMD3-207ENST00000493303 XPCQ01831 940 aaPredicted RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SLC4A10Q6U841 1118 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SPATA32Q96LK8 384 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SRCIN1Q9C0H9 1055 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 CASZ1Q86V15 1759 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 CD109Q6YHK3 1445 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SLC4A2P04920 1241 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 ACTN1P12814 892 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 EIF2B5Q13144 721 aaKnown RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 C2orf69Q8N8R5 385 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 DPF3Q92784 378 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SYTL4Q96C24 671 aaPredicted RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 IL17RAQ96F46 866 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 IQGAP1P46940 1657 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 CARNS1A5YM72 827 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SSTR3P32745 418 aaPredicted RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 NUCB1Q02818 461 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 SREBF2Q12772 1141 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 PUS10Q3MIT2 529 aaKnown RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 CCDC97Q96F63 343 aaPredicted RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 BSDC1Q9NW68 430 aaPredicted RBP4.33□□□□□ -1.72
CSMD3-207ENST00000493303 PODXL2Q9NZ53 605 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 ERBB3P21860 1342 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 FAM161AQ3B820 660 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 RSPH4AQ5TD94 716 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 C9orf131Q5VYM1 1079 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 CEP126Q9P2H0 1117 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 NRAPQ86VF7 1730 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 PLEKHH2Q8IVE3 1493 aa4.33□□□□□ -1.72
CSMD3-207ENST00000493303 H3BUI4 141 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 CES2O00748 559 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ZSCAN1Q8NBB4 408 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 RDH13Q8NBN7 331 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 SKA1Q96BD8 255 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 KIF12Q96FN5 646 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 VPS50Q96JG6 964 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 GNL3LQ9NVN8 582 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TPX2Q9ULW0 747 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 BCL9LQ86UU0 1499 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 KRT37O76014 449 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 NPY2RP49146 381 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ATP8B2P98198 1209 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TRAF1Q13077 416 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TNIP1Q15025 636 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 E2F4Q16254 413 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 INAVAQ3KP66 663 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ARMC9Q7Z3E5 817 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 RABGGTAQ92696 567 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 MSRAQ9UJ68 235 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TIAM1Q13009 1591 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 P4HBP07237 508 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 SLC3A2P08195 630 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ATF7IPQ6VMQ6 1270 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 KIF6Q6ZMV9 814 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 UHRF1BP1Q6BDS2 1440 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 MYCNP04198 464 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 HRCP23327 699 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 FOSBP53539 338 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 NEUROD1Q13562 356 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 LMBRD2Q68DH5 695 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TRIM22Q8IYM9 498 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TCP11Q8WWU5 503 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 PCDHB11Q9Y5F2 797 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 MYBBP1AQ9BQG0 1328 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 NEBLO76041 1014 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 IRX6P78412 446 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 TMF1P82094 1093 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 OS9Q13438 667 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 BROXQ5VW32 411 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ZC3H14Q6PJT7 736 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 MAP3K20Q9NYL2 800 aaKnown RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 GMEB2Q9UKD1 530 aa4.32□□□□□ -1.72
CSMD3-207ENST00000493303 ZNF330Q9Y3S2 320 aaPredicted RBP4.32□□□□□ -1.72
CSMD3-207ENST00000493303 KNDC1Q76NI1 1749 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 TNIKQ9UKE5 1360 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 FANCIQ9NVI1 1328 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 FSD2A1L4K1 749 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 MDM2Q00987 491 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-207ENST00000493303 KCNN1Q92952 543 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 HAUS2Q9NVX0 235 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 PCDHB9Q9Y5E1 797 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 ZNF316A6NFI3 1004 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-207ENST00000493303 PRR29P0C7W0 189 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 GTF2F1P35269 517 aaKnown RBP eCLIP4.31□□□□□ -1.72
CSMD3-207ENST00000493303 NCBP1Q09161 790 aaKnown RBP4.31□□□□□ -1.72
CSMD3-207ENST00000493303 ELOAQ14241 798 aaKnown RBP4.31□□□□□ -1.72
CSMD3-207ENST00000493303 MAP3K11Q16584 847 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 ARL13BQ3SXY8 428 aa4.31□□□□□ -1.72
CSMD3-207ENST00000493303 KRT25Q7Z3Z0 450 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms