RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SPG7Q9UQ90 795 aa18.26■□□□□ 0.51
HDAC3-213ENST00000492506 GNPATO15228 680 aa18.25■□□□□ 0.51
HDAC3-213ENST00000492506 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.25■□□□□ 0.51
HDAC3-213ENST00000492506 MMP10P09238 476 aa18.24■□□□□ 0.51
HDAC3-213ENST00000492506 ATP6V1AP38606 617 aa18.24■□□□□ 0.51
HDAC3-213ENST00000492506 EYA1Q99502 592 aa18.24■□□□□ 0.51
HDAC3-213ENST00000492506 ATG3Q9NT62 314 aa18.24■□□□□ 0.51
HDAC3-213ENST00000492506 TMOD3Q9NYL9 352 aa18.24■□□□□ 0.51
HDAC3-213ENST00000492506 MYH14Q7Z406 1995 aaKnown RBP18.24■□□□□ 0.51
HDAC3-213ENST00000492506 WASHC2AQ641Q2 1341 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 ARFGEF1Q9Y6D6 1849 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 KDRP35968 1356 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 PHKG2P15735 406 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 C4AP0C0L4 1744 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 C10orf71Q711Q0 1435 aa18.23■□□□□ 0.51
HDAC3-213ENST00000492506 DNAJC5GQ8N7S2 189 aa18.22■□□□□ 0.51
HDAC3-213ENST00000492506 TGFB2P61812 414 aa18.21■□□□□ 0.51
HDAC3-213ENST00000492506 IFNL2Q8IZJ0 200 aa18.21■□□□□ 0.51
HDAC3-213ENST00000492506 SLC4A9Q96Q91 983 aa18.21■□□□□ 0.51
HDAC3-213ENST00000492506 A0A0G2JLW4 131 aa18.2■□□□□ 0.5
HDAC3-213ENST00000492506 PPM1GO15355 546 aaPredicted RBP18.2■□□□□ 0.5
HDAC3-213ENST00000492506 APLP1P51693 650 aa18.2■□□□□ 0.5
HDAC3-213ENST00000492506 WDR90Q96KV7 1748 aa18.2■□□□□ 0.5
HDAC3-213ENST00000492506 TOMM70O94826 608 aa18.19■□□□□ 0.5
HDAC3-213ENST00000492506 CDCA8Q53HL2 280 aa18.19■□□□□ 0.5
HDAC3-213ENST00000492506 TRAPPC3LQ5T215 181 aa18.18■□□□□ 0.5
HDAC3-213ENST00000492506 NLGN1Q8N2Q7 840 aa18.18■□□□□ 0.5
HDAC3-213ENST00000492506 POLKQ9UBT6 870 aa18.18■□□□□ 0.5
HDAC3-213ENST00000492506 BCS1LQ9Y276 419 aa18.18■□□□□ 0.5
HDAC3-213ENST00000492506 ARHGEF1Q92888 912 aaKnown RBP18.17■□□□□ 0.5
HDAC3-213ENST00000492506 NMRK2Q9NPI5 230 aa18.17■□□□□ 0.5
HDAC3-213ENST00000492506 RTCBQ9Y3I0 505 aaKnown RBP18.17■□□□□ 0.5
HDAC3-213ENST00000492506 SBF1O95248 1867 aa18.17■□□□□ 0.5
HDAC3-213ENST00000492506 PCNTO95613 3336 aa18.17■□□□□ 0.5
HDAC3-213ENST00000492506 PLEKHG2Q9H7P9 1386 aa18.17■□□□□ 0.5
HDAC3-213ENST00000492506 GYS1P13807 737 aa18.16■□□□□ 0.5
HDAC3-213ENST00000492506 DPEP1P16444 411 aa18.16■□□□□ 0.5
HDAC3-213ENST00000492506 RC3H1Q5TC82 1133 aaKnown RBP18.16■□□□□ 0.5
HDAC3-213ENST00000492506 ADRA2BP18089 450 aa18.15■□□□□ 0.5
HDAC3-213ENST00000492506 KCNA3P22001 575 aa18.15■□□□□ 0.5
HDAC3-213ENST00000492506 ARHGAP27Q6ZUM4 889 aa18.15■□□□□ 0.5
HDAC3-213ENST00000492506 GTF3C3Q9Y5Q9 886 aa18.15■□□□□ 0.5
HDAC3-213ENST00000492506 CNTNAP4Q9C0A0 1308 aa18.15■□□□□ 0.5
HDAC3-213ENST00000492506 ERVV-2B6SEH9 535 aa18.14■□□□□ 0.49
HDAC3-213ENST00000492506 EIF4A2Q14240 407 aaKnown RBP18.14■□□□□ 0.49
HDAC3-213ENST00000492506 RPS6KA4O75676 772 aa18.13■□□□□ 0.49
HDAC3-213ENST00000492506 CCDC87Q9NVE4 849 aa18.13■□□□□ 0.49
HDAC3-213ENST00000492506 CLSPNQ9HAW4 1339 aa18.13■□□□□ 0.49
HDAC3-213ENST00000492506 KDM6AO15550 1401 aaPredicted RBP18.13■□□□□ 0.49
HDAC3-213ENST00000492506 ADAMTS7Q9UKP4 1686 aa18.12■□□□□ 0.49
HDAC3-213ENST00000492506 TJP1Q07157 1748 aa18.12■□□□□ 0.49
HDAC3-213ENST00000492506 FCHSD2O94868 740 aa18.12■□□□□ 0.49
HDAC3-213ENST00000492506 RBM42Q9BTD8 480 aaKnown RBP18.12■□□□□ 0.49
HDAC3-213ENST00000492506 RBM46Q8TBY0 533 aaKnown RBP18.11■□□□□ 0.49
HDAC3-213ENST00000492506 RFC4P35249 363 aa18.1■□□□□ 0.49
HDAC3-213ENST00000492506 C9orf131Q5VYM1 1079 aa18.1■□□□□ 0.49
HDAC3-213ENST00000492506 DCAF5Q96JK2 942 aa18.1■□□□□ 0.49
HDAC3-213ENST00000492506 PARP3Q9Y6F1 533 aa18.1■□□□□ 0.49
HDAC3-213ENST00000492506 TNRC6CQ9HCJ0 1690 aaKnown RBP18.09■□□□□ 0.49
HDAC3-213ENST00000492506 KCPQ6ZWJ8 1503 aa18.08■□□□□ 0.49
HDAC3-213ENST00000492506 HTRA3P83110 453 aa18.08■□□□□ 0.48
HDAC3-213ENST00000492506 SCN11AQ9UI33 1791 aa18.08■□□□□ 0.48
HDAC3-213ENST00000492506 HSP90AB1P08238 724 aaKnown RBP18.07■□□□□ 0.48
HDAC3-213ENST00000492506 DDR1Q08345 913 aa18.07■□□□□ 0.48
HDAC3-213ENST00000492506 PIM2Q9P1W9 311 aa18.07■□□□□ 0.48
HDAC3-213ENST00000492506 AFDNP55196 1824 aaKnown RBP18.07■□□□□ 0.48
HDAC3-213ENST00000492506 TNNT2P45379 298 aaPredicted RBP18.06■□□□□ 0.48
HDAC3-213ENST00000492506 FKBP8Q14318 412 aa18.06■□□□□ 0.48
HDAC3-213ENST00000492506 JMYQ8N9B5 988 aa18.06■□□□□ 0.48
HDAC3-213ENST00000492506 KLRG1Q96E93 195 aa18.06■□□□□ 0.48
HDAC3-213ENST00000492506 SRP68Q9UHB9 627 aaKnown RBP18.06■□□□□ 0.48
HDAC3-213ENST00000492506 VIRMAQ69YN4 1812 aaKnown RBP18.06■□□□□ 0.48
HDAC3-213ENST00000492506 USP42Q9H9J4 1324 aaKnown RBP18.05■□□□□ 0.48
HDAC3-213ENST00000492506 CRKLP46109 303 aaKnown RBP18.05■□□□□ 0.48
HDAC3-213ENST00000492506 FSTL1Q12841 308 aa18.05■□□□□ 0.48
HDAC3-213ENST00000492506 PLEKHO1Q53GL0 409 aaPredicted RBP18.05■□□□□ 0.48
HDAC3-213ENST00000492506 CCDC88AQ3V6T2 1871 aa18.05■□□□□ 0.48
HDAC3-213ENST00000492506 DLEC1Q9Y238 1755 aa18.04■□□□□ 0.48
HDAC3-213ENST00000492506 CABP4P57796 275 aa18.04■□□□□ 0.48
HDAC3-213ENST00000492506 DALRD3Q5D0E6 543 aaKnown RBP18.04■□□□□ 0.48
HDAC3-213ENST00000492506 ZNF530Q6P9A1 599 aaPredicted RBP18.04■□□□□ 0.48
HDAC3-213ENST00000492506 PTCD1O75127 700 aaKnown RBP18.03■□□□□ 0.48
HDAC3-213ENST00000492506 NRXN2Q9P2S2 1712 aa18.03■□□□□ 0.48
HDAC3-213ENST00000492506 KDM2BQ8NHM5 1336 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 TM4SF1P30408 202 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 CHRNA5P30532 468 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 AMOTQ4VCS5 1084 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 COL13A1Q5TAT6 717 aaPredicted RBP18.02■□□□□ 0.48
HDAC3-213ENST00000492506 INTS5Q6P9B9 1019 aaKnown RBP18.02■□□□□ 0.48
HDAC3-213ENST00000492506 AEBP1Q8IUX7 1158 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 C16orf71Q8IYS4 520 aaPredicted RBP18.02■□□□□ 0.48
HDAC3-213ENST00000492506 NFATC2IPQ8NCF5 419 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 RRAGCQ9HB90 399 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 RNF181Q9P0P0 153 aa18.02■□□□□ 0.48
HDAC3-213ENST00000492506 POLRMTO00411 1230 aaKnown RBP18.01■□□□□ 0.47
HDAC3-213ENST00000492506 MTHFSP49914 203 aa18.01■□□□□ 0.47
HDAC3-213ENST00000492506 TIAM2Q8IVF5 1701 aa17.98■□□□□ 0.47
HDAC3-213ENST00000492506 PRELPP51888 382 aa17.97■□□□□ 0.47
HDAC3-213ENST00000492506 C1orf141Q5JVX7 400 aa17.97■□□□□ 0.47
HDAC3-213ENST00000492506 USPL1Q5W0Q7 1092 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms