RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 SPOCK3Q9BQ16 436 aa10.63□□□□□ -0.71
SCN1A-206ENST00000491429 LRRC4BQ9NT99 713 aa10.63□□□□□ -0.71
SCN1A-206ENST00000491429 HRH3Q9Y5N1 445 aa10.63□□□□□ -0.71
SCN1A-206ENST00000491429 SOCS7O14512 581 aa10.62□□□□□ -0.71
SCN1A-206ENST00000491429 OXCT2Q9BYC2 517 aaPredicted RBP10.62□□□□□ -0.71
SCN1A-206ENST00000491429 CEP126Q9P2H0 1117 aa10.62□□□□□ -0.71
SCN1A-206ENST00000491429 SNRPNP63162 240 aaKnown RBP10.61□□□□□ -0.71
SCN1A-206ENST00000491429 ZSCAN10Q96SZ4 725 aaPredicted RBP10.61□□□□□ -0.71
SCN1A-206ENST00000491429 FHDC1Q9C0D6 1143 aaPredicted RBP10.61□□□□□ -0.71
SCN1A-206ENST00000491429 MYCP01106 439 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-206ENST00000491429 MAP2K3P46734 347 aa10.6□□□□□ -0.71
SCN1A-206ENST00000491429 BRPF1P55201 1214 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-206ENST00000491429 C1orf229Q6ZS94 237 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-206ENST00000491429 XAGE2Q96GT9 111 aa10.6□□□□□ -0.71
SCN1A-206ENST00000491429 CFHR5Q9BXR6 569 aa10.6□□□□□ -0.71
SCN1A-206ENST00000491429 A0A1B0GTH6 734 aa10.59□□□□□ -0.71
SCN1A-206ENST00000491429 SHISA8B8ZZ34 492 aa10.59□□□□□ -0.71
SCN1A-206ENST00000491429 STAU1O95793 577 aaKnown RBP10.59□□□□□ -0.71
SCN1A-206ENST00000491429 UBAP2LQ14157 1087 aaKnown RBP10.59□□□□□ -0.71
SCN1A-206ENST00000491429 TSGA10IPQ3SY00 556 aa10.59□□□□□ -0.71
SCN1A-206ENST00000491429 PROCP04070 461 aa10.58□□□□□ -0.72
SCN1A-206ENST00000491429 C4orf17Q53FE4 359 aa10.58□□□□□ -0.72
SCN1A-206ENST00000491429 KLRG1Q96E93 195 aa10.58□□□□□ -0.72
SCN1A-206ENST00000491429 RUBCNLQ9H714 662 aa10.58□□□□□ -0.72
SCN1A-206ENST00000491429 TMEM214Q6NUQ4 689 aaKnown RBP10.57□□□□□ -0.72
SCN1A-206ENST00000491429 MSX1P28360 303 aa10.56□□□□□ -0.72
SCN1A-206ENST00000491429 GNASQ5JWF2 1037 aa10.56□□□□□ -0.72
SCN1A-206ENST00000491429 GALNT6Q8NCL4 622 aa10.56□□□□□ -0.72
SCN1A-206ENST00000491429 APBB1O00213 710 aa10.55□□□□□ -0.72
SCN1A-206ENST00000491429 ADAM23O75077 832 aa10.55□□□□□ -0.72
SCN1A-206ENST00000491429 PHF24Q9UPV7 400 aa10.55□□□□□ -0.72
SCN1A-206ENST00000491429 CSB-PGBD3P0DP91 1061 aa10.54□□□□□ -0.72
SCN1A-206ENST00000491429 GTF2E1P29083 439 aaPredicted RBP10.54□□□□□ -0.72
SCN1A-206ENST00000491429 PGBD3Q8N328 593 aa10.54□□□□□ -0.72
SCN1A-206ENST00000491429 ETNK1Q9HBU6 452 aa10.54□□□□□ -0.72
SCN1A-206ENST00000491429 TBC1D2BQ9UPU7 963 aa10.54□□□□□ -0.72
SCN1A-206ENST00000491429 C2CD2LO14523 706 aa10.53□□□□□ -0.72
SCN1A-206ENST00000491429 ESCO1Q5FWF5 840 aa10.53□□□□□ -0.72
SCN1A-206ENST00000491429 PHTF2Q8N3S3 785 aa10.53□□□□□ -0.72
SCN1A-206ENST00000491429 ABHD17AQ96GS6 310 aa10.53□□□□□ -0.72
SCN1A-206ENST00000491429 DOLKQ9UPQ8 538 aa10.53□□□□□ -0.72
SCN1A-206ENST00000491429 KRBA1A5PL33 1030 aa10.52□□□□□ -0.73
SCN1A-206ENST00000491429 LBRQ14739 615 aaKnown RBP10.52□□□□□ -0.73
SCN1A-206ENST00000491429 EDARADDQ8WWZ3 215 aa10.52□□□□□ -0.73
SCN1A-206ENST00000491429 RRAGCQ9HB90 399 aa10.52□□□□□ -0.73
SCN1A-206ENST00000491429 COL8A1P27658 744 aa10.51□□□□□ -0.73
SCN1A-206ENST00000491429 GDF2Q9UK05 429 aaPredicted RBP10.51□□□□□ -0.73
SCN1A-206ENST00000491429 MKL2Q9ULH7 1088 aa10.51□□□□□ -0.73
SCN1A-206ENST00000491429 ATXN7L1Q9ULK2 861 aaPredicted RBP10.51□□□□□ -0.73
SCN1A-206ENST00000491429 BNIP3LO60238 219 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 BMP4P12644 408 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 CTBSQ01459 385 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 TLR1Q15399 786 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 EFHC2Q5JST6 749 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 PPARGC1BQ86YN6 1023 aaKnown RBP10.5□□□□□ -0.73
SCN1A-206ENST00000491429 RHBDD1Q8TEB9 315 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 NDFIP2Q9NV92 336 aa10.5□□□□□ -0.73
SCN1A-206ENST00000491429 FGFR3P22607 806 aa10.49□□□□□ -0.73
SCN1A-206ENST00000491429 USP4Q13107 963 aa10.49□□□□□ -0.73
SCN1A-206ENST00000491429 IRF5Q13568 498 aa10.49□□□□□ -0.73
SCN1A-206ENST00000491429 OXLD1Q5BKU9 147 aa10.49□□□□□ -0.73
SCN1A-206ENST00000491429 GOLGA6L1Q8N7Z2 621 aa10.49□□□□□ -0.73
SCN1A-206ENST00000491429 HOXB4P17483 251 aaPredicted RBP10.48□□□□□ -0.73
SCN1A-206ENST00000491429 PLA2G4AP47712 749 aa10.48□□□□□ -0.73
SCN1A-206ENST00000491429 EIF4G2P78344 907 aaKnown RBP eCLIP10.48□□□□□ -0.73
SCN1A-206ENST00000491429 SLFNL1Q499Z3 407 aa10.48□□□□□ -0.73
SCN1A-206ENST00000491429 RNF135Q8IUD6 432 aa10.48□□□□□ -0.73
SCN1A-206ENST00000491429 GGA1Q9UJY5 639 aa10.48□□□□□ -0.73
SCN1A-206ENST00000491429 CRISPLD1Q9H336 500 aa10.47□□□□□ -0.73
SCN1A-206ENST00000491429 AMPD1P23109 780 aa10.46□□□□□ -0.73
SCN1A-206ENST00000491429 SCNN1DP51172 638 aa10.46□□□□□ -0.73
SCN1A-206ENST00000491429 XP32Q5T750 250 aa10.46□□□□□ -0.73
SCN1A-206ENST00000491429 SLCO4C1Q6ZQN7 724 aa10.46□□□□□ -0.73
SCN1A-206ENST00000491429 SUV39H2Q9H5I1 410 aa10.46□□□□□ -0.73
SCN1A-206ENST00000491429 LINC00114Q6XXX2 140 aa10.45□□□□□ -0.74
SCN1A-206ENST00000491429 TBC1D9Q6ZT07 1266 aa10.45□□□□□ -0.74
SCN1A-206ENST00000491429 DNAAF2Q9NVR5 837 aaKnown RBP10.45□□□□□ -0.74
SCN1A-206ENST00000491429 CHIC2Q9UKJ5 165 aa10.45□□□□□ -0.74
SCN1A-206ENST00000491429 ATP4AP20648 1035 aa10.44□□□□□ -0.74
SCN1A-206ENST00000491429 BAG6P46379 1132 aa10.44□□□□□ -0.74
SCN1A-206ENST00000491429 VAC14Q08AM6 782 aa10.44□□□□□ -0.74
SCN1A-206ENST00000491429 GRIN2CQ14957 1233 aa10.44□□□□□ -0.74
SCN1A-206ENST00000491429 GDF10P55107 478 aa10.43□□□□□ -0.74
SCN1A-206ENST00000491429 ZCCHC2Q9C0B9 1178 aaKnown RBP10.43□□□□□ -0.74
SCN1A-206ENST00000491429 K7ELQ4 463 aaPredicted RBP10.42□□□□□ -0.74
SCN1A-206ENST00000491429 INHAP05111 366 aa10.42□□□□□ -0.74
SCN1A-206ENST00000491429 EPXP11678 715 aa10.42□□□□□ -0.74
SCN1A-206ENST00000491429 ALYREFQ86V81 257 aaKnown RBP10.42□□□□□ -0.74
SCN1A-206ENST00000491429 BTBD6Q96KE9 485 aa10.42□□□□□ -0.74
SCN1A-206ENST00000491429 HCN2Q9UL51 889 aa10.42□□□□□ -0.74
SCN1A-206ENST00000491429 NEURL1BA8MQ27 555 aa10.41□□□□□ -0.74
SCN1A-206ENST00000491429 PCDHGC4Q9Y5F7 938 aa10.41□□□□□ -0.74
SCN1A-206ENST00000491429 FURINP09958 794 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 ARAFP10398 606 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 FIGNL1Q6PIW4 674 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 AIDAQ96BJ3 306 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 SIRT1Q96EB6 747 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 PRM3Q9NNZ6 103 aa10.4□□□□□ -0.74
SCN1A-206ENST00000491429 SMTNP53814 917 aa10.39□□□□□ -0.75
SCN1A-206ENST00000491429 NIFKQ9BYG3 293 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms