RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 COL23A1Q86Y22 540 aaPredicted RBP13.27□□□□□ -0.29
TMEM39A-210ENST00000490099 MTHFSP49914 203 aa13.26□□□□□ -0.29
TMEM39A-210ENST00000490099 AEBP1Q8IUX7 1158 aa13.26□□□□□ -0.29
TMEM39A-210ENST00000490099 DCAF5Q96JK2 942 aa13.26□□□□□ -0.29
TMEM39A-210ENST00000490099 ATG3Q9NT62 314 aa13.26□□□□□ -0.29
TMEM39A-210ENST00000490099 ASAP1Q9ULH1 1129 aa13.26□□□□□ -0.29
TMEM39A-210ENST00000490099 LOC102724428A0A0B4J2F2 783 aa13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 SIK1P57059 783 aa13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 FLAD1Q8NFF5 587 aa13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 TMOD3Q9NYL9 352 aa13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 TUBGCP6Q96RT7 1819 aa13.25□□□□□ -0.29
TMEM39A-210ENST00000490099 SULT6B1Q6IMI4 303 aa13.24□□□□□ -0.29
TMEM39A-210ENST00000490099 AMIGO3Q86WK7 504 aa13.24□□□□□ -0.29
TMEM39A-210ENST00000490099 KDM6AO15550 1401 aaPredicted RBP13.23□□□□□ -0.29
TMEM39A-210ENST00000490099 TAF1LQ8IZX4 1826 aa13.23□□□□□ -0.29
TMEM39A-210ENST00000490099 DSG3P32926 999 aa13.23□□□□□ -0.29
TMEM39A-210ENST00000490099 ITPK1Q13572 414 aa13.23□□□□□ -0.29
TMEM39A-210ENST00000490099 POLD1P28340 1107 aa13.22□□□□□ -0.29
TMEM39A-210ENST00000490099 ZNF530Q6P9A1 599 aaPredicted RBP13.22□□□□□ -0.29
TMEM39A-210ENST00000490099 LINC00116Q8NCU8 138 aa13.22□□□□□ -0.29
TMEM39A-210ENST00000490099 SLC4A9Q96Q91 983 aa13.22□□□□□ -0.29
TMEM39A-210ENST00000490099 C5P01031 1676 aa13.21□□□□□ -0.29
TMEM39A-210ENST00000490099 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
TMEM39A-210ENST00000490099 SSFA2P28290 1259 aa13.2□□□□□ -0.3
TMEM39A-210ENST00000490099 CC2D1BQ5T0F9 858 aaKnown RBP13.2□□□□□ -0.3
TMEM39A-210ENST00000490099 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.19□□□□□ -0.3
TMEM39A-210ENST00000490099 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
TMEM39A-210ENST00000490099 RC3H1Q5TC82 1133 aaKnown RBP13.19□□□□□ -0.3
TMEM39A-210ENST00000490099 ZNF831Q5JPB2 1677 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 DIAPH1O60610 1272 aaKnown RBP13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 CABP4P57796 275 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 AKAP4Q5JQC9 854 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 C1orf141Q5JVX7 400 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 NFATC2IPQ8NCF5 419 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 AK7Q96M32 723 aa13.18□□□□□ -0.3
TMEM39A-210ENST00000490099 COL3A1P02461 1466 aaPredicted RBP13.17□□□□□ -0.3
TMEM39A-210ENST00000490099 UBR3Q6ZT12 1888 aa13.17□□□□□ -0.3
TMEM39A-210ENST00000490099 YY1P25490 414 aa13.17□□□□□ -0.3
TMEM39A-210ENST00000490099 SMIM5Q71RC9 77 aa13.17□□□□□ -0.3
TMEM39A-210ENST00000490099 CD2APQ9Y5K6 639 aa13.17□□□□□ -0.3
TMEM39A-210ENST00000490099 CNTNAP4Q9C0A0 1308 aa13.16□□□□□ -0.3
TMEM39A-210ENST00000490099 HMOX1P09601 288 aa13.15□□□□□ -0.3
TMEM39A-210ENST00000490099 MTHFSDQ2M296 383 aaKnown RBP13.15□□□□□ -0.3
TMEM39A-210ENST00000490099 NLGN2Q8NFZ4 835 aa13.15□□□□□ -0.3
TMEM39A-210ENST00000490099 LGR6Q9HBX8 967 aa13.15□□□□□ -0.3
TMEM39A-210ENST00000490099 GNPATO15228 680 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 ABCB7O75027 752 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 RPS6KA4O75676 772 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 POLA2Q14181 598 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 MSL1Q68DK7 614 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 SLC52A2Q9HAB3 445 aa13.14□□□□□ -0.31
TMEM39A-210ENST00000490099 ADAMTS7Q9UKP4 1686 aa13.13□□□□□ -0.31
TMEM39A-210ENST00000490099 RNMTO43148 476 aaKnown RBP13.13□□□□□ -0.31
TMEM39A-210ENST00000490099 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
TMEM39A-210ENST00000490099 SCN11AQ9UI33 1791 aa13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 MRC1P22897 1456 aa13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 PHF14O94880 888 aa13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 TRAPPC3LQ5T215 181 aa13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 ARHGEF1Q92888 912 aaKnown RBP13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 RTCBQ9Y3I0 505 aaKnown RBP13.12□□□□□ -0.31
TMEM39A-210ENST00000490099 MYH14Q7Z406 1995 aaKnown RBP13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 CICQ96RK0 1608 aaPredicted RBP13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 PTCD1O75127 700 aaKnown RBP13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 PPP2R1AP30153 589 aa13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 INTS5Q6P9B9 1019 aaKnown RBP13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 NLGN1Q8N2Q7 840 aa13.11□□□□□ -0.31
TMEM39A-210ENST00000490099 COL5A3P25940 1745 aaPredicted RBP13.1□□□□□ -0.31
TMEM39A-210ENST00000490099 YBX3P16989 372 aaKnown RBP eCLIP13.1□□□□□ -0.31
TMEM39A-210ENST00000490099 GPR162Q16538 588 aa13.1□□□□□ -0.31
TMEM39A-210ENST00000490099 IL17REQ8NFR9 667 aa13.1□□□□□ -0.31
TMEM39A-210ENST00000490099 GYS1P13807 737 aa13.09□□□□□ -0.31
TMEM39A-210ENST00000490099 CRKLP46109 303 aaKnown RBP13.09□□□□□ -0.31
TMEM39A-210ENST00000490099 VSIG10Q8N0Z9 540 aa13.09□□□□□ -0.31
TMEM39A-210ENST00000490099 RSPH6AQ9H0K4 717 aa13.09□□□□□ -0.31
TMEM39A-210ENST00000490099 CHD4Q14839 1912 aa13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 GRIN3BO60391 1043 aa13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 CYP19A1P11511 503 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 KLHL34Q8N239 644 aa13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 ZNF784Q8NCA9 323 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 GAS2L2Q8NHY3 880 aa13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 PHACTR3Q96KR7 559 aa13.08□□□□□ -0.32
TMEM39A-210ENST00000490099 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 FCHSD2O94868 740 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 MMP10P09238 476 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 SLC39A6Q13433 755 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 DNAJC10Q8IXB1 793 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 CFAP53Q96M91 514 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 CEMIPQ8WUJ3 1361 aa13.07□□□□□ -0.32
TMEM39A-210ENST00000490099 UTRNP46939 3433 aa13.06□□□□□ -0.32
TMEM39A-210ENST00000490099 GNAT3A8MTJ3 354 aa13.06□□□□□ -0.32
TMEM39A-210ENST00000490099 RFC4P35249 363 aa13.06□□□□□ -0.32
TMEM39A-210ENST00000490099 KCPQ6ZWJ8 1503 aa13.06□□□□□ -0.32
TMEM39A-210ENST00000490099 TJP1Q07157 1748 aa13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 CNGB1Q14028 1251 aaPredicted RBP13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 CCDC87Q9NVE4 849 aa13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 NUDCQ9Y266 331 aa13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 SOS1Q07889 1333 aaPredicted RBP13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 USP42Q9H9J4 1324 aaKnown RBP13.05□□□□□ -0.32
TMEM39A-210ENST00000490099 PRKAR2BP31323 418 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms