RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 PXDNLA1KZ92 1463 aa13.07□□□□□ -0.32
COL17A1-207ENST00000488320 TOGARAM1Q9Y4F4 1720 aa13.07□□□□□ -0.32
COL17A1-207ENST00000488320 PLEKHG2Q9H7P9 1386 aa13.07□□□□□ -0.32
COL17A1-207ENST00000488320 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
COL17A1-207ENST00000488320 RTL1A6NKG5 1358 aa13.06□□□□□ -0.32
COL17A1-207ENST00000488320 HSPA1AP0DMV8 641 aaKnown RBP13.05□□□□□ -0.32
COL17A1-207ENST00000488320 HSPA1BP0DMV9 641 aaKnown RBP13.05□□□□□ -0.32
COL17A1-207ENST00000488320 SMC1BQ8NDV3 1235 aa13.05□□□□□ -0.32
COL17A1-207ENST00000488320 PUS7Q96PZ0 661 aaKnown RBP13.05□□□□□ -0.32
COL17A1-207ENST00000488320 TMOD3Q9NYL9 352 aa13.05□□□□□ -0.32
COL17A1-207ENST00000488320 RNF181Q9P0P0 153 aa13.05□□□□□ -0.32
COL17A1-207ENST00000488320 RTCBQ9Y3I0 505 aaKnown RBP13.05□□□□□ -0.32
COL17A1-207ENST00000488320 KIF13BQ9NQT8 1826 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 KCPQ6ZWJ8 1503 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 ITPK1Q13572 414 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 HSP90AB2PQ58FF8 381 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 GGNBP2Q9H3C7 697 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 PIM2Q9P1W9 311 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 ASAP1Q9ULH1 1129 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 SPG7Q9UQ90 795 aa13.04□□□□□ -0.32
COL17A1-207ENST00000488320 DALRD3Q5D0E6 543 aaKnown RBP13.03□□□□□ -0.32
COL17A1-207ENST00000488320 PCNTO95613 3336 aa13.03□□□□□ -0.32
COL17A1-207ENST00000488320 RFC4P35249 363 aa13.02□□□□□ -0.33
COL17A1-207ENST00000488320 ARHGEF1Q92888 912 aaKnown RBP13.02□□□□□ -0.33
COL17A1-207ENST00000488320 KIAA1551Q9HCM1 1747 aa13.02□□□□□ -0.33
COL17A1-207ENST00000488320 NKX1-1Q15270 411 aaPredicted RBP13.01□□□□□ -0.33
COL17A1-207ENST00000488320 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
COL17A1-207ENST00000488320 INSRP06213 1382 aa13.01□□□□□ -0.33
COL17A1-207ENST00000488320 C10orf71Q711Q0 1435 aa13.01□□□□□ -0.33
COL17A1-207ENST00000488320 MAP2P11137 1827 aaKnown RBP13.01□□□□□ -0.33
COL17A1-207ENST00000488320 FYB1O15117 783 aa13□□□□□ -0.33
COL17A1-207ENST00000488320 KCNA3P22001 575 aa13□□□□□ -0.33
COL17A1-207ENST00000488320 ARFGEF1Q9Y6D6 1849 aa12.99□□□□□ -0.33
COL17A1-207ENST00000488320 PKD1L3Q7Z443 1732 aa12.99□□□□□ -0.33
COL17A1-207ENST00000488320 GYS1P13807 737 aa12.99□□□□□ -0.33
COL17A1-207ENST00000488320 DCAF5Q96JK2 942 aa12.99□□□□□ -0.33
COL17A1-207ENST00000488320 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
COL17A1-207ENST00000488320 FLT4P35916 1363 aa12.98□□□□□ -0.33
COL17A1-207ENST00000488320 BRCA1P38398 1863 aaKnown RBP12.98□□□□□ -0.33
COL17A1-207ENST00000488320 PPM1GO15355 546 aaPredicted RBP12.98□□□□□ -0.33
COL17A1-207ENST00000488320 VEGFAP15692 232 aaPredicted RBP12.98□□□□□ -0.33
COL17A1-207ENST00000488320 IFNL2Q8IZJ0 200 aa12.98□□□□□ -0.33
COL17A1-207ENST00000488320 C4AP0C0L4 1744 aa12.98□□□□□ -0.33
COL17A1-207ENST00000488320 TNRC6CQ9HCJ0 1690 aaKnown RBP12.97□□□□□ -0.33
COL17A1-207ENST00000488320 SLC24A1O60721 1099 aa12.97□□□□□ -0.33
COL17A1-207ENST00000488320 RC3H1Q5TC82 1133 aaKnown RBP12.97□□□□□ -0.33
COL17A1-207ENST00000488320 SBF1O95248 1867 aa12.96□□□□□ -0.33
COL17A1-207ENST00000488320 RPS6KA4O75676 772 aa12.96□□□□□ -0.33
COL17A1-207ENST00000488320 CHRNA5P30532 468 aa12.96□□□□□ -0.33
COL17A1-207ENST00000488320 PHKG2P15735 406 aa12.95□□□□□ -0.34
COL17A1-207ENST00000488320 ST20-MTHFSA0A0A6YYL1 179 aa12.94□□□□□ -0.34
COL17A1-207ENST00000488320 GLTPD2A6NH11 291 aa12.94□□□□□ -0.34
COL17A1-207ENST00000488320 RASSF7Q02833 373 aa12.94□□□□□ -0.34
COL17A1-207ENST00000488320 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.94□□□□□ -0.34
COL17A1-207ENST00000488320 EMILIN1Q9Y6C2 1016 aa12.94□□□□□ -0.34
COL17A1-207ENST00000488320 KIF24Q5T7B8 1368 aa12.94□□□□□ -0.34
COL17A1-207ENST00000488320 SLC4A9Q96Q91 983 aa12.93□□□□□ -0.34
COL17A1-207ENST00000488320 SRP68Q9UHB9 627 aaKnown RBP12.93□□□□□ -0.34
COL17A1-207ENST00000488320 CNTNAP4Q9C0A0 1308 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 ZC3H4Q9UPT8 1303 aaKnown RBP12.92□□□□□ -0.34
COL17A1-207ENST00000488320 LMNB1P20700 586 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 FKBP8Q14318 412 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 DPY19L2Q6NUT2 758 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 TESK2Q96S53 571 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 EYA1Q99502 592 aa12.92□□□□□ -0.34
COL17A1-207ENST00000488320 MKRN1Q9UHC7 482 aaKnown RBP12.92□□□□□ -0.34
COL17A1-207ENST00000488320 ERVV-2B6SEH9 535 aa12.91□□□□□ -0.34
COL17A1-207ENST00000488320 SLC34A2O95436 690 aa12.91□□□□□ -0.34
COL17A1-207ENST00000488320 PTCD1O75127 700 aaKnown RBP12.9□□□□□ -0.34
COL17A1-207ENST00000488320 CABP4P57796 275 aa12.9□□□□□ -0.34
COL17A1-207ENST00000488320 DDR1Q08345 913 aa12.9□□□□□ -0.34
COL17A1-207ENST00000488320 CCDC88AQ3V6T2 1871 aa12.9□□□□□ -0.34
COL17A1-207ENST00000488320 ZPR1O75312 459 aa12.89□□□□□ -0.35
COL17A1-207ENST00000488320 HSP90AB1P08238 724 aaKnown RBP12.89□□□□□ -0.35
COL17A1-207ENST00000488320 AIDAQ96BJ3 306 aa12.89□□□□□ -0.35
COL17A1-207ENST00000488320 KIF20BQ96Q89 1820 aa12.89□□□□□ -0.35
COL17A1-207ENST00000488320 KDRP35968 1356 aa12.89□□□□□ -0.35
COL17A1-207ENST00000488320 TONSLQ96HA7 1378 aa12.89□□□□□ -0.35
COL17A1-207ENST00000488320 FOXN1O15353 648 aa12.88□□□□□ -0.35
COL17A1-207ENST00000488320 CRKLP46109 303 aaKnown RBP12.88□□□□□ -0.35
COL17A1-207ENST00000488320 CREBZFQ9NS37 354 aa12.88□□□□□ -0.35
COL17A1-207ENST00000488320 MYH14Q7Z406 1995 aaKnown RBP12.88□□□□□ -0.35
COL17A1-207ENST00000488320 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
COL17A1-207ENST00000488320 USP42Q9H9J4 1324 aaKnown RBP12.88□□□□□ -0.35
COL17A1-207ENST00000488320 POLRMTO00411 1230 aaKnown RBP12.87□□□□□ -0.35
COL17A1-207ENST00000488320 TM4SF1P30408 202 aa12.87□□□□□ -0.35
COL17A1-207ENST00000488320 TTLL6Q8N841 843 aa12.87□□□□□ -0.35
COL17A1-207ENST00000488320 PRDM10Q9NQV6 1147 aa12.87□□□□□ -0.35
COL17A1-207ENST00000488320 COL5A3P25940 1745 aaPredicted RBP12.87□□□□□ -0.35
COL17A1-207ENST00000488320 POTECB2RU33 542 aa12.86□□□□□ -0.35
COL17A1-207ENST00000488320 CTCFP49711 727 aaPredicted RBP12.86□□□□□ -0.35
COL17A1-207ENST00000488320 PLEKHO1Q53GL0 409 aaPredicted RBP12.86□□□□□ -0.35
COL17A1-207ENST00000488320 USPL1Q5W0Q7 1092 aa12.86□□□□□ -0.35
COL17A1-207ENST00000488320 CHADLQ6NUI6 762 aa12.86□□□□□ -0.35
COL17A1-207ENST00000488320 NCAPD2Q15021 1401 aa12.86□□□□□ -0.35
COL17A1-207ENST00000488320 ZNF831Q5JPB2 1677 aa12.86□□□□□ -0.35
COL17A1-207ENST00000488320 C2CD5Q86YS7 1000 aa12.85□□□□□ -0.35
COL17A1-207ENST00000488320 H0YIN7 160 aa12.84□□□□□ -0.35
COL17A1-207ENST00000488320 MTHFSP49914 203 aa12.84□□□□□ -0.35
COL17A1-207ENST00000488320 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms