RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 DDX54Q8TDD1 881 aaKnown RBP13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 LAS1LQ9Y4W2 734 aaKnown RBP13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 FANCIQ9NVI1 1328 aa13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 A0A0G2JS52 829 aa13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 ZNF853P0CG23 659 aa13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 RXRBP28702 533 aa13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 MYT1Q01538 1121 aa13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 TAF7Q15545 349 aaPredicted RBP13.7□□□□□ -0.22
HLA-DMB-261ENST00000487996 GLI3P10071 1580 aa13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 ERVV-2B6SEH9 535 aa13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 CHL1O00533 1208 aa13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 CT47B1P0C2W7 299 aaPredicted RBP13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 THSD7AQ9UPZ6 1657 aa13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 MRC1P22897 1456 aa13.69□□□□□ -0.22
HLA-DMB-261ENST00000487996 KDM6AO15550 1401 aaPredicted RBP13.68□□□□□ -0.22
HLA-DMB-261ENST00000487996 LGR6Q9HBX8 967 aa13.68□□□□□ -0.22
HLA-DMB-261ENST00000487996 TSPYL4Q9UJ04 414 aa13.68□□□□□ -0.22
HLA-DMB-261ENST00000487996 ONECUT3O60422 494 aaPredicted RBP13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 UPF1Q92900 1129 aaKnown RBP eCLIP13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 SLC52A2Q9HAB3 445 aa13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 CABP4P57796 275 aa13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 RBM6P78332 1123 aaKnown RBP13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 MBIPQ9NS73 344 aa13.67□□□□□ -0.22
HLA-DMB-261ENST00000487996 TSR2Q969E8 191 aaKnown RBP13.66□□□□□ -0.22
HLA-DMB-261ENST00000487996 SIPA1L3O60292 1781 aaPredicted RBP13.66□□□□□ -0.22
HLA-DMB-261ENST00000487996 BTBD11A6QL63 1104 aa13.65□□□□□ -0.22
HLA-DMB-261ENST00000487996 ZNF428Q96B54 188 aa13.65□□□□□ -0.22
HLA-DMB-261ENST00000487996 SOS1Q07889 1333 aaPredicted RBP13.65□□□□□ -0.22
HLA-DMB-261ENST00000487996 CAPN15O75808 1086 aa13.64□□□□□ -0.23
HLA-DMB-261ENST00000487996 CHMP4AQ9BY43 222 aa13.64□□□□□ -0.23
HLA-DMB-261ENST00000487996 KAT6BQ8WYB5 2073 aa13.64□□□□□ -0.23
HLA-DMB-261ENST00000487996 RCAN3Q9UKA8 241 aa13.64□□□□□ -0.23
HLA-DMB-261ENST00000487996 KDM3BQ7LBC6 1761 aa13.63□□□□□ -0.23
HLA-DMB-261ENST00000487996 EXOSC9Q06265 439 aaKnown RBP13.63□□□□□ -0.23
HLA-DMB-261ENST00000487996 SEPT12Q8IYM1 358 aa13.63□□□□□ -0.23
HLA-DMB-261ENST00000487996 NFATC2IPQ8NCF5 419 aa13.63□□□□□ -0.23
HLA-DMB-261ENST00000487996 TMOD3Q9NYL9 352 aa13.63□□□□□ -0.23
HLA-DMB-261ENST00000487996 RGS12O14924 1447 aa13.62□□□□□ -0.23
HLA-DMB-261ENST00000487996 TTC5Q8N0Z6 440 aa13.62□□□□□ -0.23
HLA-DMB-261ENST00000487996 MARCH10Q8NA82 808 aaPredicted RBP13.62□□□□□ -0.23
HLA-DMB-261ENST00000487996 BCL9O00512 1426 aa13.61□□□□□ -0.23
HLA-DMB-261ENST00000487996 TOGARAM1Q9Y4F4 1720 aa13.61□□□□□ -0.23
HLA-DMB-261ENST00000487996 TWISTNBQ3B726 338 aaPredicted RBP13.61□□□□□ -0.23
HLA-DMB-261ENST00000487996 ZNF790Q6PG37 636 aa13.61□□□□□ -0.23
HLA-DMB-261ENST00000487996 MIS18AQ9NYP9 233 aa13.61□□□□□ -0.23
HLA-DMB-261ENST00000487996 DOT1LQ8TEK3 1739 aa13.6□□□□□ -0.23
HLA-DMB-261ENST00000487996 ITGB4P16144 1822 aa13.6□□□□□ -0.23
HLA-DMB-261ENST00000487996 HOXB7P09629 217 aa13.6□□□□□ -0.23
HLA-DMB-261ENST00000487996 EIF4A1P60842 406 aaKnown RBP13.59□□□□□ -0.23
HLA-DMB-261ENST00000487996 ALDH1L2Q3SY69 923 aa13.59□□□□□ -0.23
HLA-DMB-261ENST00000487996 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.59□□□□□ -0.23
HLA-DMB-261ENST00000487996 KRT27Q7Z3Y8 459 aa13.58□□□□□ -0.24
HLA-DMB-261ENST00000487996 C8orf58Q8NAV2 365 aa13.58□□□□□ -0.24
HLA-DMB-261ENST00000487996 SYTL4Q96C24 671 aaPredicted RBP13.58□□□□□ -0.24
HLA-DMB-261ENST00000487996 FMNL2Q96PY5 1086 aa13.58□□□□□ -0.24
HLA-DMB-261ENST00000487996 PAPPAQ13219 1627 aa13.58□□□□□ -0.24
HLA-DMB-261ENST00000487996 VAMP4O75379 141 aa13.57□□□□□ -0.24
HLA-DMB-261ENST00000487996 DSG3P32926 999 aa13.57□□□□□ -0.24
HLA-DMB-261ENST00000487996 PRIM1P49642 420 aaKnown RBP13.57□□□□□ -0.24
HLA-DMB-261ENST00000487996 PIGBQ92521 554 aa13.57□□□□□ -0.24
HLA-DMB-261ENST00000487996 RARSP54136 660 aaKnown RBP13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 HEG1Q9ULI3 1381 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 CACNA1FO60840 1977 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 ELL2O00472 640 aaPredicted RBP13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 SLC39A6Q13433 755 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 CCDC30Q5VVM6 783 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 FAM196AQ6ZSG2 479 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 TSPYL6Q8N831 410 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 SMC4Q9NTJ3 1288 aa13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 SUPT16HQ9Y5B9 1047 aaKnown RBP13.56□□□□□ -0.24
HLA-DMB-261ENST00000487996 BRWD3Q6RI45 1802 aa13.55□□□□□ -0.24
HLA-DMB-261ENST00000487996 KIF16BQ96L93 1317 aa13.55□□□□□ -0.24
HLA-DMB-261ENST00000487996 NEFLP07196 543 aa13.55□□□□□ -0.24
HLA-DMB-261ENST00000487996 SMARCC1Q92922 1105 aaPredicted RBP13.55□□□□□ -0.24
HLA-DMB-261ENST00000487996 NHSQ6T4R5 1651 aa13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 KCNQ3O43525 872 aa13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 GIGYF1O75420 1035 aaPredicted RBP13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 SNRPA1P09661 255 aaKnown RBP13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 ACSBG1Q96GR2 724 aa13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 ZNF496Q96IT1 587 aaPredicted RBP13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 STK31Q9BXU1 1019 aa13.54□□□□□ -0.24
HLA-DMB-261ENST00000487996 RNF123Q5XPI4 1314 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 BRPF1P55201 1214 aaPredicted RBP13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 KRT24Q2M2I5 525 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 HDGFL1Q5TGJ6 251 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 KCPQ6ZWJ8 1503 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 IPO8O15397 1037 aaKnown RBP13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 SSH1Q8WYL5 1049 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 TEX13AQ9BXU3 409 aaPredicted RBP13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 ATG3Q9NT62 314 aa13.53□□□□□ -0.24
HLA-DMB-261ENST00000487996 SBF2Q86WG5 1849 aa13.52□□□□□ -0.24
HLA-DMB-261ENST00000487996 ASAP1Q9ULH1 1129 aa13.52□□□□□ -0.25
HLA-DMB-261ENST00000487996 LAMB4A4D0S4 1761 aa13.51□□□□□ -0.25
HLA-DMB-261ENST00000487996 BCAR3O75815 825 aa13.51□□□□□ -0.25
HLA-DMB-261ENST00000487996 MS4A1P11836 297 aa13.51□□□□□ -0.25
HLA-DMB-261ENST00000487996 PTCD1O75127 700 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms