RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MTHFSP49914 203 aa16.72■□□□□ 0.27
SDC3-204ENST00000487984 ITPK1Q13572 414 aa16.72■□□□□ 0.27
SDC3-204ENST00000487984 CC2D1BQ5T0F9 858 aaKnown RBP16.72■□□□□ 0.27
SDC3-204ENST00000487984 SMIM5Q71RC9 77 aa16.72■□□□□ 0.27
SDC3-204ENST00000487984 PHF14O94880 888 aa16.71■□□□□ 0.27
SDC3-204ENST00000487984 ATP6V1AP38606 617 aa16.71■□□□□ 0.27
SDC3-204ENST00000487984 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.7■□□□□ 0.26
SDC3-204ENST00000487984 C1orf141Q5JVX7 400 aa16.7■□□□□ 0.26
SDC3-204ENST00000487984 NLGN2Q8NFZ4 835 aa16.7■□□□□ 0.26
SDC3-204ENST00000487984 SSFA2P28290 1259 aa16.69■□□□□ 0.26
SDC3-204ENST00000487984 CABP4P57796 275 aa16.69■□□□□ 0.26
SDC3-204ENST00000487984 GNPATO15228 680 aa16.68■□□□□ 0.26
SDC3-204ENST00000487984 GPR162Q16538 588 aa16.68■□□□□ 0.26
SDC3-204ENST00000487984 SLC4A9Q96Q91 983 aa16.68■□□□□ 0.26
SDC3-204ENST00000487984 NPC1L1Q9UHC9 1359 aa16.67■□□□□ 0.26
SDC3-204ENST00000487984 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
SDC3-204ENST00000487984 UBR3Q6ZT12 1888 aa16.67■□□□□ 0.26
SDC3-204ENST00000487984 HMOX1P09601 288 aa16.66■□□□□ 0.26
SDC3-204ENST00000487984 CNGB1Q14028 1251 aaPredicted RBP16.66■□□□□ 0.26
SDC3-204ENST00000487984 DIAPH1O60610 1272 aaKnown RBP16.65■□□□□ 0.26
SDC3-204ENST00000487984 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
SDC3-204ENST00000487984 GOLGB1Q14789 3259 aaKnown RBP16.65■□□□□ 0.26
SDC3-204ENST00000487984 AKAP4Q5JQC9 854 aa16.64■□□□□ 0.25
SDC3-204ENST00000487984 NFATC2IPQ8NCF5 419 aa16.64■□□□□ 0.25
SDC3-204ENST00000487984 CD2APQ9Y5K6 639 aa16.63■□□□□ 0.25
SDC3-204ENST00000487984 COL3A1P02461 1466 aaPredicted RBP16.62■□□□□ 0.25
SDC3-204ENST00000487984 PTCD1O75127 700 aaKnown RBP16.62■□□□□ 0.25
SDC3-204ENST00000487984 RTCBQ9Y3I0 505 aaKnown RBP16.62■□□□□ 0.25
SDC3-204ENST00000487984 CNTNAP4Q9C0A0 1308 aa16.62■□□□□ 0.25
SDC3-204ENST00000487984 YBX3P16989 372 aaKnown RBP eCLIP16.61■□□□□ 0.25
SDC3-204ENST00000487984 RC3H1Q5TC82 1133 aaKnown RBP16.61■□□□□ 0.25
SDC3-204ENST00000487984 ZNF784Q8NCA9 323 aaPredicted RBP16.61■□□□□ 0.25
SDC3-204ENST00000487984 LGR6Q9HBX8 967 aa16.61■□□□□ 0.25
SDC3-204ENST00000487984 ZNF831Q5JPB2 1677 aa16.61■□□□□ 0.25
SDC3-204ENST00000487984 MTHFSDQ2M296 383 aaKnown RBP16.6■□□□□ 0.25
SDC3-204ENST00000487984 TRAPPC3LQ5T215 181 aa16.6■□□□□ 0.25
SDC3-204ENST00000487984 SLC52A2Q9HAB3 445 aa16.6■□□□□ 0.25
SDC3-204ENST00000487984 RNMTO43148 476 aaKnown RBP16.59■□□□□ 0.25
SDC3-204ENST00000487984 ADRA2BP18089 450 aa16.59■□□□□ 0.25
SDC3-204ENST00000487984 U2SURPO15042 1029 aaKnown RBP16.58■□□□□ 0.24
SDC3-204ENST00000487984 RPS6KA4O75676 772 aa16.58■□□□□ 0.24
SDC3-204ENST00000487984 ARHGEF1Q92888 912 aaKnown RBP16.58■□□□□ 0.24
SDC3-204ENST00000487984 MRC1P22897 1456 aa16.58■□□□□ 0.24
SDC3-204ENST00000487984 COL5A3P25940 1745 aaPredicted RBP16.58■□□□□ 0.24
SDC3-204ENST00000487984 SCN11AQ9UI33 1791 aa16.57■□□□□ 0.24
SDC3-204ENST00000487984 GRIN3BO60391 1043 aa16.57■□□□□ 0.24
SDC3-204ENST00000487984 MMP10P09238 476 aa16.57■□□□□ 0.24
SDC3-204ENST00000487984 CRKLP46109 303 aaKnown RBP16.57■□□□□ 0.24
SDC3-204ENST00000487984 CHD4Q14839 1912 aa16.55■□□□□ 0.24
SDC3-204ENST00000487984 GYS1P13807 737 aa16.55■□□□□ 0.24
SDC3-204ENST00000487984 RFC4P35249 363 aa16.55■□□□□ 0.24
SDC3-204ENST00000487984 SLC39A6Q13433 755 aa16.55■□□□□ 0.24
SDC3-204ENST00000487984 NLGN1Q8N2Q7 840 aa16.55■□□□□ 0.24
SDC3-204ENST00000487984 DNAJC10Q8IXB1 793 aa16.54■□□□□ 0.24
SDC3-204ENST00000487984 TJP1Q07157 1748 aa16.53■□□□□ 0.24
SDC3-204ENST00000487984 ADAMTS7Q9UKP4 1686 aa16.53■□□□□ 0.24
SDC3-204ENST00000487984 CICQ96RK0 1608 aaPredicted RBP16.53■□□□□ 0.24
SDC3-204ENST00000487984 INTS5Q6P9B9 1019 aaKnown RBP16.53■□□□□ 0.24
SDC3-204ENST00000487984 CFAP53Q96M91 514 aa16.53■□□□□ 0.24
SDC3-204ENST00000487984 MYH14Q7Z406 1995 aaKnown RBP16.53■□□□□ 0.24
SDC3-204ENST00000487984 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.24
SDC3-204ENST00000487984 GAS2L2Q8NHY3 880 aa16.52■□□□□ 0.24
SDC3-204ENST00000487984 SRP68Q9UHB9 627 aaKnown RBP16.52■□□□□ 0.24
SDC3-204ENST00000487984 WWC3Q9ULE0 1092 aa16.52■□□□□ 0.24
SDC3-204ENST00000487984 PPP2R1AP30153 589 aa16.51■□□□□ 0.23
SDC3-204ENST00000487984 CCDC87Q9NVE4 849 aa16.51■□□□□ 0.23
SDC3-204ENST00000487984 USP42Q9H9J4 1324 aaKnown RBP16.5■□□□□ 0.23
SDC3-204ENST00000487984 GNAT3A8MTJ3 354 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 CYP19A1P11511 503 aaPredicted RBP16.5■□□□□ 0.23
SDC3-204ENST00000487984 PRKAR2BP31323 418 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 IL17REQ8NFR9 667 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 RSPH6AQ9H0K4 717 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 C10orf71Q711Q0 1435 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 C4AP0C0L4 1744 aa16.5■□□□□ 0.23
SDC3-204ENST00000487984 PXDNLA1KZ92 1463 aa16.49■□□□□ 0.23
SDC3-204ENST00000487984 FKBP8Q14318 412 aa16.49■□□□□ 0.23
SDC3-204ENST00000487984 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
SDC3-204ENST00000487984 PARP3Q9Y6F1 533 aa16.49■□□□□ 0.23
SDC3-204ENST00000487984 SOS1Q07889 1333 aaPredicted RBP16.48■□□□□ 0.23
SDC3-204ENST00000487984 ZEB1P37275 1124 aaPredicted RBP16.48■□□□□ 0.23
SDC3-204ENST00000487984 VSIG10Q8N0Z9 540 aa16.48■□□□□ 0.23
SDC3-204ENST00000487984 NUDCQ9Y266 331 aa16.48■□□□□ 0.23
SDC3-204ENST00000487984 TGFB2P61812 414 aa16.47■□□□□ 0.23
SDC3-204ENST00000487984 TEFQ10587 303 aa16.47■□□□□ 0.23
SDC3-204ENST00000487984 TTC5Q8N0Z6 440 aa16.47■□□□□ 0.23
SDC3-204ENST00000487984 ZBTB1Q9Y2K1 713 aa16.47■□□□□ 0.23
SDC3-204ENST00000487984 U2AF1L5P0DN76 240 aaPredicted RBP16.46■□□□□ 0.23
SDC3-204ENST00000487984 U2AF1Q01081 240 aaKnown RBP eCLIP16.46■□□□□ 0.23
SDC3-204ENST00000487984 DDR1Q08345 913 aa16.46■□□□□ 0.23
SDC3-204ENST00000487984 CEMIPQ8WUJ3 1361 aa16.46■□□□□ 0.23
SDC3-204ENST00000487984 A0A0G2JLW4 131 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 ZPR1O75312 459 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 USPL1Q5W0Q7 1092 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 ZNF790Q6PG37 636 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 ZNF496Q96IT1 587 aaPredicted RBP16.45■□□□□ 0.22
SDC3-204ENST00000487984 COL15A1P39059 1388 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 VIRMAQ69YN4 1812 aaKnown RBP16.45■□□□□ 0.22
SDC3-204ENST00000487984 KIF13BQ9NQT8 1826 aa16.45■□□□□ 0.22
SDC3-204ENST00000487984 UBR2Q8IWV8 1755 aa16.44■□□□□ 0.22
SDC3-204ENST00000487984 DPEP1P16444 411 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms