RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PHKA2P46019 1235 aa8.43□□□□□ -1.06
VPS41-213ENST00000485955 TAS1R3Q7RTX0 852 aa8.43□□□□□ -1.06
VPS41-213ENST00000485955 PLEKHM2Q8IWE5 1019 aa8.43□□□□□ -1.06
VPS41-213ENST00000485955 CALR3Q96L12 384 aaKnown RBP8.43□□□□□ -1.06
VPS41-213ENST00000485955 CDC14CA4D256 554 aa8.42□□□□□ -1.06
VPS41-213ENST00000485955 ZBTB7BO15156 539 aaPredicted RBP8.42□□□□□ -1.06
VPS41-213ENST00000485955 KRT76Q01546 638 aa8.42□□□□□ -1.06
VPS41-213ENST00000485955 TLR1Q15399 786 aa8.42□□□□□ -1.06
VPS41-213ENST00000485955 WDR44Q5JSH3 913 aa8.42□□□□□ -1.06
VPS41-213ENST00000485955 TMEM214Q6NUQ4 689 aaKnown RBP8.42□□□□□ -1.06
VPS41-213ENST00000485955 PPARGC1BQ86YN6 1023 aaKnown RBP8.42□□□□□ -1.06
VPS41-213ENST00000485955 GAS2L1Q99501 681 aaPredicted RBP8.42□□□□□ -1.06
VPS41-213ENST00000485955 DYRK1BQ9Y463 629 aa8.42□□□□□ -1.06
VPS41-213ENST00000485955 LORP23490 312 aaPredicted RBP8.41□□□□□ -1.06
VPS41-213ENST00000485955 SMTNP53814 917 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 CLDN10P78369 228 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 DBN1Q16643 649 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 C4orf17Q53FE4 359 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS41-213ENST00000485955 SLC4A9Q96Q91 983 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 TIMMDC1Q9NPL8 285 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 KIAA1024Q9UPX6 916 aa8.41□□□□□ -1.06
VPS41-213ENST00000485955 PALM3A6NDB9 673 aaPredicted RBP8.4□□□□□ -1.06
VPS41-213ENST00000485955 RIPOR1Q6ZS17 1223 aa8.4□□□□□ -1.06
VPS41-213ENST00000485955 SV2AQ7L0J3 742 aa8.4□□□□□ -1.06
VPS41-213ENST00000485955 PPP1R12CQ9BZL4 782 aa8.4□□□□□ -1.06
VPS41-213ENST00000485955 MKRN1Q9UHC7 482 aaKnown RBP8.4□□□□□ -1.06
VPS41-213ENST00000485955 PSME1Q06323 249 aa8.39□□□□□ -1.07
VPS41-213ENST00000485955 RNFT1Q5M7Z0 435 aa8.39□□□□□ -1.07
VPS41-213ENST00000485955 COL25A1Q9BXS0 654 aaPredicted RBP8.39□□□□□ -1.07
VPS41-213ENST00000485955 MAFBQ9Y5Q3 323 aaPredicted RBP8.39□□□□□ -1.07
VPS41-213ENST00000485955 USP3Q9Y6I4 520 aa8.39□□□□□ -1.07
VPS41-213ENST00000485955 GNASQ5JWF2 1037 aa8.38□□□□□ -1.07
VPS41-213ENST00000485955 TRIM22Q8IYM9 498 aa8.38□□□□□ -1.07
VPS41-213ENST00000485955 RHBDD1Q8TEB9 315 aa8.38□□□□□ -1.07
VPS41-213ENST00000485955 ZNF837Q96EG3 531 aaPredicted RBP8.38□□□□□ -1.07
VPS41-213ENST00000485955 ZMYND15Q9H091 742 aa8.38□□□□□ -1.07
VPS41-213ENST00000485955 ZNF358Q9NW07 568 aa8.38□□□□□ -1.07
VPS41-213ENST00000485955 IQSEC3Q9UPP2 1182 aaPredicted RBP8.38□□□□□ -1.07
VPS41-213ENST00000485955 A6NJY4 79 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 F11P03951 625 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 THBS1P07996 1170 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 INSM1Q01101 510 aaPredicted RBP8.37□□□□□ -1.07
VPS41-213ENST00000485955 MTFR1Q15390 333 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 TRIM50Q86XT4 487 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 ZNF295-AS1Q8N0V1 137 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 OGFOD1Q8N543 542 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 CNTNAP3BQ96NU0 1288 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 CNTNAP3Q9BZ76 1288 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 GPAMQ9HCL2 828 aa8.37□□□□□ -1.07
VPS41-213ENST00000485955 CDK2AP1O14519 115 aa8.36□□□□□ -1.07
VPS41-213ENST00000485955 DKK1O94907 266 aa8.36□□□□□ -1.07
VPS41-213ENST00000485955 GTF2E1P29083 439 aaPredicted RBP8.36□□□□□ -1.07
VPS41-213ENST00000485955 CCDC102BQ68D86 513 aa8.36□□□□□ -1.07
VPS41-213ENST00000485955 TPCN2Q8NHX9 752 aa8.36□□□□□ -1.07
VPS41-213ENST00000485955 DNAAF2Q9NVR5 837 aaKnown RBP8.36□□□□□ -1.07
VPS41-213ENST00000485955 GPR25O00155 361 aa8.35□□□□□ -1.07
VPS41-213ENST00000485955 KANK4Q5T7N3 995 aaPredicted RBP8.35□□□□□ -1.07
VPS41-213ENST00000485955 TNS4Q8IZW8 715 aa8.35□□□□□ -1.07
VPS41-213ENST00000485955 ZNF594Q96JF6 807 aaPredicted RBP8.35□□□□□ -1.07
VPS41-213ENST00000485955 A0A1B0GTH6 734 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 BACH1O14867 736 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 MSX1P28360 303 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 LMOD1P29536 600 aaPredicted RBP8.34□□□□□ -1.07
VPS41-213ENST00000485955 PLA2G4AP47712 749 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 ATP1A2P50993 1020 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 EPHA4P54764 986 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 GAS6Q14393 721 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 LARGE2Q8N3Y3 721 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 GTPBP3Q969Y2 492 aaKnown RBP8.34□□□□□ -1.07
VPS41-213ENST00000485955 RUBCNLQ9H714 662 aa8.34□□□□□ -1.07
VPS41-213ENST00000485955 SCHIP1Q9P0W5 487 aaPredicted RBP8.34□□□□□ -1.07
VPS41-213ENST00000485955 RASA1P20936 1047 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 TBCELQ5QJ74 424 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 CFAP70Q5T0N1 1121 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 ZSCAN1Q8NBB4 408 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 AIDAQ96BJ3 306 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 GMCL1Q96IK5 515 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 NIFKQ9BYG3 293 aaKnown RBP8.33□□□□□ -1.08
VPS41-213ENST00000485955 PARP3Q9Y6F1 533 aa8.33□□□□□ -1.08
VPS41-213ENST00000485955 SFI1A8K8P3 1242 aa8.32□□□□□ -1.08
VPS41-213ENST00000485955 H7C1W4 665 aa8.32□□□□□ -1.08
VPS41-213ENST00000485955 FOXK2Q01167 660 aa8.32□□□□□ -1.08
VPS41-213ENST00000485955 CRTC2Q53ET0 693 aaPredicted RBP8.32□□□□□ -1.08
VPS41-213ENST00000485955 SIX5Q8N196 739 aa8.32□□□□□ -1.08
VPS41-213ENST00000485955 NUCKS1Q9H1E3 243 aaKnown RBP8.32□□□□□ -1.08
VPS41-213ENST00000485955 UBAP2LQ14157 1087 aaKnown RBP8.31□□□□□ -1.08
VPS41-213ENST00000485955 CABP1Q9NZU7 370 aa8.31□□□□□ -1.08
VPS41-213ENST00000485955 ATP4AP20648 1035 aa8.3□□□□□ -1.08
VPS41-213ENST00000485955 TSEN2Q8NCE0 465 aaKnown RBP8.3□□□□□ -1.08
VPS41-213ENST00000485955 ZDHHC1Q8WTX9 485 aa8.3□□□□□ -1.08
VPS41-213ENST00000485955 PTK7Q13308 1070 aa8.29□□□□□ -1.08
VPS41-213ENST00000485955 CDCA8Q53HL2 280 aa8.29□□□□□ -1.08
VPS41-213ENST00000485955 SLC9A9Q8IVB4 645 aa8.29□□□□□ -1.08
VPS41-213ENST00000485955 VRTNQ9H8Y1 702 aa8.29□□□□□ -1.08
VPS41-213ENST00000485955 STK17AQ9UEE5 414 aa8.29□□□□□ -1.08
VPS41-213ENST00000485955 SLURP2P0DP57 97 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 CSB-PGBD3P0DP91 1061 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 RFX1P22670 979 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 SH3PXD2AQ5TCZ1 1133 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms