RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 PLEKHO1Q53GL0 409 aaPredicted RBP12.6□□□□□ -0.39
LIMK1-205ENST00000483414 RAPGEF4Q8WZA2 1011 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.6□□□□□ -0.39
LIMK1-205ENST00000483414 MAPK8IP3Q9UPT6 1336 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 GNAT3A8MTJ3 354 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 LGR6Q9HBX8 967 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 USP35Q9P2H5 1018 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 N4BP2Q86UW6 1770 aaPredicted RBP12.59□□□□□ -0.39
LIMK1-205ENST00000483414 WDR63Q8IWG1 891 aa12.59□□□□□ -0.39
LIMK1-205ENST00000483414 RNMTO43148 476 aaKnown RBP12.58□□□□□ -0.39
LIMK1-205ENST00000483414 DCTN1Q14203 1278 aa12.58□□□□□ -0.39
LIMK1-205ENST00000483414 SPG7Q9UQ90 795 aa12.58□□□□□ -0.39
LIMK1-205ENST00000483414 ZNF530Q6P9A1 599 aaPredicted RBP12.58□□□□□ -0.4
LIMK1-205ENST00000483414 RBM6P78332 1123 aaKnown RBP12.58□□□□□ -0.4
LIMK1-205ENST00000483414 MCM10Q7L590 875 aa12.58□□□□□ -0.4
LIMK1-205ENST00000483414 THUMPD2Q9BTF0 503 aaKnown RBP12.58□□□□□ -0.4
LIMK1-205ENST00000483414 SLFN5Q08AF3 891 aa12.57□□□□□ -0.4
LIMK1-205ENST00000483414 IFNL2Q8IZJ0 200 aa12.57□□□□□ -0.4
LIMK1-205ENST00000483414 DUSP27Q5VZP5 1158 aa12.57□□□□□ -0.4
LIMK1-205ENST00000483414 CDCA7LQ96GN5 454 aa12.57□□□□□ -0.4
LIMK1-205ENST00000483414 CACNA1FO60840 1977 aa12.57□□□□□ -0.4
LIMK1-205ENST00000483414 DCAF5Q96JK2 942 aa12.56□□□□□ -0.4
LIMK1-205ENST00000483414 CHL1O00533 1208 aa12.56□□□□□ -0.4
LIMK1-205ENST00000483414 SEPT12Q8IYM1 358 aa12.55□□□□□ -0.4
LIMK1-205ENST00000483414 DDB1Q16531 1140 aa12.55□□□□□ -0.4
LIMK1-205ENST00000483414 MPRIPQ6WCQ1 1025 aa12.55□□□□□ -0.4
LIMK1-205ENST00000483414 TUBGCP6Q96RT7 1819 aa12.55□□□□□ -0.4
LIMK1-205ENST00000483414 SLC52A2Q9HAB3 445 aa12.55□□□□□ -0.4
LIMK1-205ENST00000483414 IFT57Q9NWB7 429 aa12.54□□□□□ -0.4
LIMK1-205ENST00000483414 CFAP44Q96MT7 982 aa12.54□□□□□ -0.4
LIMK1-205ENST00000483414 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
LIMK1-205ENST00000483414 FANCIQ9NVI1 1328 aa12.54□□□□□ -0.4
LIMK1-205ENST00000483414 ERVV-2B6SEH9 535 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 EXOC5O00471 708 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 LMOD3Q0VAK6 560 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 NUP188Q5SRE5 1749 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 PDE3BQ13370 1112 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 MYH14Q7Z406 1995 aaKnown RBP12.53□□□□□ -0.4
LIMK1-205ENST00000483414 NEUROD2Q15784 382 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 NPM2Q86SE8 214 aaKnown RBP12.53□□□□□ -0.4
LIMK1-205ENST00000483414 IL27Q8NEV9 243 aa12.53□□□□□ -0.4
LIMK1-205ENST00000483414 QSER1Q2KHR3 1735 aa12.52□□□□□ -0.4
LIMK1-205ENST00000483414 MBIPQ9NS73 344 aa12.52□□□□□ -0.4
LIMK1-205ENST00000483414 PTF1AQ7RTS3 328 aa12.52□□□□□ -0.41
LIMK1-205ENST00000483414 HSP90AB1P08238 724 aaKnown RBP12.51□□□□□ -0.41
LIMK1-205ENST00000483414 GOLGA2Q08379 1002 aa12.51□□□□□ -0.41
LIMK1-205ENST00000483414 RXRBP28702 533 aa12.51□□□□□ -0.41
LIMK1-205ENST00000483414 C1orf141Q5JVX7 400 aa12.51□□□□□ -0.41
LIMK1-205ENST00000483414 BCORQ6W2J9 1755 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 E9PSI1 815 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 UBR3Q6ZT12 1888 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 DDX54Q8TDD1 881 aaKnown RBP12.5□□□□□ -0.41
LIMK1-205ENST00000483414 PIGBQ92521 554 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 CCDC9Q9Y3X0 531 aaKnown RBP12.5□□□□□ -0.41
LIMK1-205ENST00000483414 C4AP0C0L4 1744 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 C4BP0C0L5 1744 aa12.5□□□□□ -0.41
LIMK1-205ENST00000483414 KCNQ3O43525 872 aa12.49□□□□□ -0.41
LIMK1-205ENST00000483414 NFATC2IPQ8NCF5 419 aa12.49□□□□□ -0.41
LIMK1-205ENST00000483414 TAF7Q15545 349 aaPredicted RBP12.49□□□□□ -0.41
LIMK1-205ENST00000483414 TSR2Q969E8 191 aaKnown RBP12.49□□□□□ -0.41
LIMK1-205ENST00000483414 KCNQ2O43526 872 aa12.48□□□□□ -0.41
LIMK1-205ENST00000483414 ERICH6BQ5W0A0 696 aa12.48□□□□□ -0.41
LIMK1-205ENST00000483414 SLC4A9Q96Q91 983 aa12.48□□□□□ -0.41
LIMK1-205ENST00000483414 NEFMP07197 916 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 EIF4A1P60842 406 aaKnown RBP12.47□□□□□ -0.41
LIMK1-205ENST00000483414 KRT27Q7Z3Y8 459 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 ARFGEF2Q9Y6D5 1785 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 GNAI1P63096 354 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 ATG3Q9NT62 314 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 MIS18AQ9NYP9 233 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 FAM182BQ5T319 152 aa12.47□□□□□ -0.41
LIMK1-205ENST00000483414 RTF1Q92541 710 aaKnown RBP12.46□□□□□ -0.41
LIMK1-205ENST00000483414 CALD1Q05682 793 aaKnown RBP12.46□□□□□ -0.41
LIMK1-205ENST00000483414 ZNF790Q6PG37 636 aa12.46□□□□□ -0.41
LIMK1-205ENST00000483414 TSPYL6Q8N831 410 aa12.46□□□□□ -0.41
LIMK1-205ENST00000483414 RNF123Q5XPI4 1314 aa12.46□□□□□ -0.42
LIMK1-205ENST00000483414 SCN7AQ01118 1682 aa12.46□□□□□ -0.42
LIMK1-205ENST00000483414 COL24A1Q17RW2 1714 aa12.46□□□□□ -0.42
LIMK1-205ENST00000483414 KRT24Q2M2I5 525 aa12.46□□□□□ -0.42
LIMK1-205ENST00000483414 C8orf58Q8NAV2 365 aa12.46□□□□□ -0.42
LIMK1-205ENST00000483414 ANKRD36CQ5JPF3 1778 aa12.45□□□□□ -0.42
LIMK1-205ENST00000483414 LRP10Q7Z4F1 713 aa12.45□□□□□ -0.42
LIMK1-205ENST00000483414 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
LIMK1-205ENST00000483414 BTBD11A6QL63 1104 aa12.44□□□□□ -0.42
LIMK1-205ENST00000483414 ANP32AP39687 249 aaKnown RBP12.44□□□□□ -0.42
LIMK1-205ENST00000483414 ASAP1Q9ULH1 1129 aa12.44□□□□□ -0.42
LIMK1-205ENST00000483414 CASZ1Q86V15 1759 aa12.44□□□□□ -0.42
LIMK1-205ENST00000483414 VAMP4O75379 141 aa12.44□□□□□ -0.42
LIMK1-205ENST00000483414 MYH16Q9H6N6 1097 aa12.43□□□□□ -0.42
LIMK1-205ENST00000483414 PRAMEF22A3QJZ6 481 aa12.43□□□□□ -0.42
LIMK1-205ENST00000483414 CABP4P57796 275 aa12.43□□□□□ -0.42
LIMK1-205ENST00000483414 SLC39A6Q13433 755 aa12.43□□□□□ -0.42
LIMK1-205ENST00000483414 BCL11BQ9C0K0 894 aaPredicted RBP12.43□□□□□ -0.42
LIMK1-205ENST00000483414 SOS1Q07889 1333 aaPredicted RBP12.43□□□□□ -0.42
LIMK1-205ENST00000483414 GIGYF1O75420 1035 aaPredicted RBP12.43□□□□□ -0.42
LIMK1-205ENST00000483414 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
LIMK1-205ENST00000483414 EXOSC9Q06265 439 aaKnown RBP12.43□□□□□ -0.42
LIMK1-205ENST00000483414 FAM196AQ6ZSG2 479 aa12.42□□□□□ -0.42
LIMK1-205ENST00000483414 ZNF496Q96IT1 587 aaPredicted RBP12.42□□□□□ -0.42
LIMK1-205ENST00000483414 TSPYL4Q9UJ04 414 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms