RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 CARD14Q9BXL6 1004 aa15.75■□□□□ 0.11
TTC28-206ENST00000480563 ATG3Q9NT62 314 aa15.75■□□□□ 0.11
TTC28-206ENST00000480563 PXDNLA1KZ92 1463 aa15.74■□□□□ 0.11
TTC28-206ENST00000480563 PHKG2P15735 406 aa15.74■□□□□ 0.11
TTC28-206ENST00000480563 CDCA8Q53HL2 280 aa15.74■□□□□ 0.11
TTC28-206ENST00000480563 RTCBQ9Y3I0 505 aaKnown RBP15.74■□□□□ 0.11
TTC28-206ENST00000480563 NCAPD2Q15021 1401 aa15.74■□□□□ 0.11
TTC28-206ENST00000480563 MAP2P11137 1827 aaKnown RBP15.73■□□□□ 0.11
TTC28-206ENST00000480563 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
TTC28-206ENST00000480563 NMRK2Q9NPI5 230 aa15.73■□□□□ 0.11
TTC28-206ENST00000480563 PKD1L3Q7Z443 1732 aa15.73■□□□□ 0.11
TTC28-206ENST00000480563 CICQ96RK0 1608 aaPredicted RBP15.72■□□□□ 0.11
TTC28-206ENST00000480563 FCHSD2O94868 740 aa15.72■□□□□ 0.11
TTC28-206ENST00000480563 DPEP1P16444 411 aa15.72■□□□□ 0.11
TTC28-206ENST00000480563 ARHGEF1Q92888 912 aaKnown RBP15.71■□□□□ 0.11
TTC28-206ENST00000480563 CCDC87Q9NVE4 849 aa15.71■□□□□ 0.11
TTC28-206ENST00000480563 SLC4A9Q96Q91 983 aa15.7■□□□□ 0.1
TTC28-206ENST00000480563 RBM42Q9BTD8 480 aaKnown RBP15.7■□□□□ 0.1
TTC28-206ENST00000480563 GYS1P13807 737 aa15.69■□□□□ 0.1
TTC28-206ENST00000480563 ADRA2BP18089 450 aa15.69■□□□□ 0.1
TTC28-206ENST00000480563 RFC4P35249 363 aa15.69■□□□□ 0.1
TTC28-206ENST00000480563 RC3H1Q5TC82 1133 aaKnown RBP15.69■□□□□ 0.1
TTC28-206ENST00000480563 PARP3Q9Y6F1 533 aa15.69■□□□□ 0.1
TTC28-206ENST00000480563 C10orf71Q711Q0 1435 aa15.68■□□□□ 0.1
TTC28-206ENST00000480563 KIF20BQ96Q89 1820 aa15.68■□□□□ 0.1
TTC28-206ENST00000480563 RPS6KA4O75676 772 aa15.68■□□□□ 0.1
TTC28-206ENST00000480563 C9orf131Q5VYM1 1079 aa15.68■□□□□ 0.1
TTC28-206ENST00000480563 C16orf71Q8IYS4 520 aaPredicted RBP15.68■□□□□ 0.1
TTC28-206ENST00000480563 RBM46Q8TBY0 533 aaKnown RBP15.68■□□□□ 0.1
TTC28-206ENST00000480563 POLKQ9UBT6 870 aa15.68■□□□□ 0.1
TTC28-206ENST00000480563 KDRP35968 1356 aa15.67■□□□□ 0.1
TTC28-206ENST00000480563 ERVV-2B6SEH9 535 aa15.67■□□□□ 0.1
TTC28-206ENST00000480563 KCNA3P22001 575 aa15.67■□□□□ 0.1
TTC28-206ENST00000480563 HTRA3P83110 453 aa15.66■□□□□ 0.1
TTC28-206ENST00000480563 EIF4A2Q14240 407 aaKnown RBP15.66■□□□□ 0.1
TTC28-206ENST00000480563 PIM2Q9P1W9 311 aa15.66■□□□□ 0.1
TTC28-206ENST00000480563 N4BP2Q86UW6 1770 aaPredicted RBP15.66■□□□□ 0.1
TTC28-206ENST00000480563 KIF13BQ9NQT8 1826 aa15.66■□□□□ 0.1
TTC28-206ENST00000480563 CNTNAP4Q9C0A0 1308 aa15.66■□□□□ 0.1
TTC28-206ENST00000480563 KIAA1551Q9HCM1 1747 aa15.65■□□□□ 0.1
TTC28-206ENST00000480563 DCAF5Q96JK2 942 aa15.65■□□□□ 0.1
TTC28-206ENST00000480563 HSP90AB1P08238 724 aaKnown RBP15.64■□□□□ 0.09
TTC28-206ENST00000480563 FSTL1Q12841 308 aa15.64■□□□□ 0.09
TTC28-206ENST00000480563 KLRG1Q96E93 195 aa15.64■□□□□ 0.09
TTC28-206ENST00000480563 KDM2BQ8NHM5 1336 aa15.64■□□□□ 0.09
TTC28-206ENST00000480563 PLEKHG2Q9H7P9 1386 aa15.63■□□□□ 0.09
TTC28-206ENST00000480563 TNNT2P45379 298 aaPredicted RBP15.63■□□□□ 0.09
TTC28-206ENST00000480563 CABP4P57796 275 aa15.63■□□□□ 0.09
TTC28-206ENST00000480563 DALRD3Q5D0E6 543 aaKnown RBP15.63■□□□□ 0.09
TTC28-206ENST00000480563 PLEKHO1Q53GL0 409 aaPredicted RBP15.62■□□□□ 0.09
TTC28-206ENST00000480563 COL13A1Q5TAT6 717 aaPredicted RBP15.62■□□□□ 0.09
TTC28-206ENST00000480563 JMYQ8N9B5 988 aa15.62■□□□□ 0.09
TTC28-206ENST00000480563 RRAGCQ9HB90 399 aa15.62■□□□□ 0.09
TTC28-206ENST00000480563 RNF181Q9P0P0 153 aa15.62■□□□□ 0.09
TTC28-206ENST00000480563 C4AP0C0L4 1744 aa15.62■□□□□ 0.09
TTC28-206ENST00000480563 PTCD1O75127 700 aaKnown RBP15.61■□□□□ 0.09
TTC28-206ENST00000480563 FKBP8Q14318 412 aa15.61■□□□□ 0.09
TTC28-206ENST00000480563 SRP68Q9UHB9 627 aaKnown RBP15.61■□□□□ 0.09
TTC28-206ENST00000480563 ANKRD26Q9UPS8 1709 aa15.6■□□□□ 0.09
TTC28-206ENST00000480563 CRKLP46109 303 aaKnown RBP15.6■□□□□ 0.09
TTC28-206ENST00000480563 DDR1Q08345 913 aa15.6■□□□□ 0.09
TTC28-206ENST00000480563 ZNF530Q6P9A1 599 aaPredicted RBP15.6■□□□□ 0.09
TTC28-206ENST00000480563 KCPQ6ZWJ8 1503 aa15.59■□□□□ 0.09
TTC28-206ENST00000480563 CHRNA5P30532 468 aa15.59■□□□□ 0.09
TTC28-206ENST00000480563 MTHFSP49914 203 aa15.59■□□□□ 0.09
TTC28-206ENST00000480563 AMOTQ4VCS5 1084 aa15.59■□□□□ 0.09
TTC28-206ENST00000480563 ZNF831Q5JPB2 1677 aa15.59■□□□□ 0.09
TTC28-206ENST00000480563 WDR90Q96KV7 1748 aa15.58■□□□□ 0.08
TTC28-206ENST00000480563 NFATC2IPQ8NCF5 419 aa15.58■□□□□ 0.08
TTC28-206ENST00000480563 USP42Q9H9J4 1324 aaKnown RBP15.58■□□□□ 0.08
TTC28-206ENST00000480563 KDM6AO15550 1401 aaPredicted RBP15.58■□□□□ 0.08
TTC28-206ENST00000480563 CAPN15O75808 1086 aa15.57■□□□□ 0.08
TTC28-206ENST00000480563 SMC1BQ8NDV3 1235 aa15.57■□□□□ 0.08
TTC28-206ENST00000480563 POLRMTO00411 1230 aaKnown RBP15.56■□□□□ 0.08
TTC28-206ENST00000480563 TM4SF1P30408 202 aa15.56■□□□□ 0.08
TTC28-206ENST00000480563 C1orf141Q5JVX7 400 aa15.56■□□□□ 0.08
TTC28-206ENST00000480563 INTS5Q6P9B9 1019 aaKnown RBP15.56■□□□□ 0.08
TTC28-206ENST00000480563 POLR3GLQ9BT43 218 aa15.56■□□□□ 0.08
TTC28-206ENST00000480563 COL5A3P25940 1745 aaPredicted RBP15.56■□□□□ 0.08
TTC28-206ENST00000480563 BRCA1P38398 1863 aaKnown RBP15.56■□□□□ 0.08
TTC28-206ENST00000480563 TNS4Q8IZW8 715 aa15.55■□□□□ 0.08
TTC28-206ENST00000480563 MYH14Q7Z406 1995 aaKnown RBP15.55■□□□□ 0.08
TTC28-206ENST00000480563 ARFGEF1Q9Y6D6 1849 aa15.54■□□□□ 0.08
TTC28-206ENST00000480563 ZPR1O75312 459 aa15.54■□□□□ 0.08
TTC28-206ENST00000480563 USPL1Q5W0Q7 1092 aa15.54■□□□□ 0.08
TTC28-206ENST00000480563 AEBP1Q8IUX7 1158 aa15.54■□□□□ 0.08
TTC28-206ENST00000480563 RASSF7Q02833 373 aa15.53■□□□□ 0.08
TTC28-206ENST00000480563 VEGFAP15692 232 aaPredicted RBP15.52■□□□□ 0.08
TTC28-206ENST00000480563 ZC3H4Q9UPT8 1303 aaKnown RBP15.51■□□□□ 0.07
TTC28-206ENST00000480563 GLTPD2A6NH11 291 aa15.51■□□□□ 0.07
TTC28-206ENST00000480563 LMNB1P20700 586 aa15.51■□□□□ 0.07
TTC28-206ENST00000480563 SULT6B1Q6IMI4 303 aa15.51■□□□□ 0.07
TTC28-206ENST00000480563 DNAJC10Q8IXB1 793 aa15.51■□□□□ 0.07
TTC28-206ENST00000480563 PRELPP51888 382 aa15.5■□□□□ 0.07
TTC28-206ENST00000480563 NFIXQ14938 502 aa15.5■□□□□ 0.07
TTC28-206ENST00000480563 SOS1Q07889 1333 aaPredicted RBP15.49■□□□□ 0.07
TTC28-206ENST00000480563 PANK3Q9H999 370 aa15.49■□□□□ 0.07
TTC28-206ENST00000480563 NARFQ9UHQ1 456 aa15.49■□□□□ 0.07
TTC28-206ENST00000480563 SERPINB2P05120 415 aa15.48■□□□□ 0.07
TTC28-206ENST00000480563 CYP19A1P11511 503 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms