RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 KCNQ3O43525 872 aa17.12■□□□□ 0.33
CHD3-210ENST00000479080 HSP90AB1P08238 724 aaKnown RBP17.12■□□□□ 0.33
CHD3-210ENST00000479080 CFAP44Q96MT7 982 aa17.12■□□□□ 0.33
CHD3-210ENST00000479080 BCL9O00512 1426 aa17.12■□□□□ 0.33
CHD3-210ENST00000479080 A0A0G2JS52 829 aa17.11■□□□□ 0.33
CHD3-210ENST00000479080 RXRBP28702 533 aa17.11■□□□□ 0.33
CHD3-210ENST00000479080 MYT1Q01538 1121 aa17.11■□□□□ 0.33
CHD3-210ENST00000479080 GNAI1P63096 354 aa17.1■□□□□ 0.33
CHD3-210ENST00000479080 KRT24Q2M2I5 525 aa17.1■□□□□ 0.33
CHD3-210ENST00000479080 LAS1LQ9Y4W2 734 aaKnown RBP17.1■□□□□ 0.33
CHD3-210ENST00000479080 ITGB4P16144 1822 aa17.1■□□□□ 0.33
CHD3-210ENST00000479080 ERVV-2B6SEH9 535 aa17.09■□□□□ 0.33
CHD3-210ENST00000479080 CALD1Q05682 793 aaKnown RBP17.09■□□□□ 0.33
CHD3-210ENST00000479080 TAF7Q15545 349 aaPredicted RBP17.09■□□□□ 0.33
CHD3-210ENST00000479080 PTF1AQ7RTS3 328 aa17.09■□□□□ 0.33
CHD3-210ENST00000479080 NFATC2IPQ8NCF5 419 aa17.09■□□□□ 0.33
CHD3-210ENST00000479080 NHSQ6T4R5 1651 aa17.08■□□□□ 0.32
CHD3-210ENST00000479080 KCPQ6ZWJ8 1503 aa17.08■□□□□ 0.32
CHD3-210ENST00000479080 TEFQ10587 303 aa17.08■□□□□ 0.32
CHD3-210ENST00000479080 KCNQ2O43526 872 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 EXOSC9Q06265 439 aaKnown RBP17.07■□□□□ 0.32
CHD3-210ENST00000479080 SLC39A6Q13433 755 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 TSPYL6Q8N831 410 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 PIGBQ92521 554 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 ACSBG1Q96GR2 724 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 TSPYL4Q9UJ04 414 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 UBR2Q8IWV8 1755 aa17.07■□□□□ 0.32
CHD3-210ENST00000479080 HEG1Q9ULI3 1381 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 PRIM1P49642 420 aaKnown RBP17.06■□□□□ 0.32
CHD3-210ENST00000479080 CABP4P57796 275 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 KRT27Q7Z3Y8 459 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 C8orf58Q8NAV2 365 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 MYH16Q9H6N6 1097 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 BABAM1Q9NWV8 329 aa17.06■□□□□ 0.32
CHD3-210ENST00000479080 BTBD11A6QL63 1104 aa17.05■□□□□ 0.32
CHD3-210ENST00000479080 EIF4A1P60842 406 aaKnown RBP17.05■□□□□ 0.32
CHD3-210ENST00000479080 SBF2Q86WG5 1849 aa17.05■□□□□ 0.32
CHD3-210ENST00000479080 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
CHD3-210ENST00000479080 TMOD3Q9NYL9 352 aa17.03■□□□□ 0.32
CHD3-210ENST00000479080 ASAP1Q9ULH1 1129 aa17.03■□□□□ 0.32
CHD3-210ENST00000479080 C5P01031 1676 aa17.03■□□□□ 0.32
CHD3-210ENST00000479080 PRAMEF22A3QJZ6 481 aa17.02■□□□□ 0.32
CHD3-210ENST00000479080 ZNF790Q6PG37 636 aa17.02■□□□□ 0.32
CHD3-210ENST00000479080 ZNF496Q96IT1 587 aaPredicted RBP17.01■□□□□ 0.31
CHD3-210ENST00000479080 VAMP4O75379 141 aa17■□□□□ 0.31
CHD3-210ENST00000479080 SLC4A9Q96Q91 983 aa17■□□□□ 0.31
CHD3-210ENST00000479080 EP400Q96L91 3159 aa17■□□□□ 0.31
CHD3-210ENST00000479080 BTAF1O14981 1849 aa17■□□□□ 0.31
CHD3-210ENST00000479080 ELL2O00472 640 aaPredicted RBP16.99■□□□□ 0.31
CHD3-210ENST00000479080 SYTL4Q96C24 671 aaPredicted RBP16.99■□□□□ 0.31
CHD3-210ENST00000479080 TJP1Q07157 1748 aa16.98■□□□□ 0.31
CHD3-210ENST00000479080 CICQ96RK0 1608 aaPredicted RBP16.97■□□□□ 0.31
CHD3-210ENST00000479080 GIGYF1O75420 1035 aaPredicted RBP16.97■□□□□ 0.31
CHD3-210ENST00000479080 TWISTNBQ3B726 338 aaPredicted RBP16.97■□□□□ 0.31
CHD3-210ENST00000479080 FAM196AQ6ZSG2 479 aa16.97■□□□□ 0.31
CHD3-210ENST00000479080 TNS1Q9HBL0 1735 aaKnown RBP16.96■□□□□ 0.31
CHD3-210ENST00000479080 CENPBP07199 599 aaPredicted RBP16.96■□□□□ 0.31
CHD3-210ENST00000479080 RARSP54136 660 aaKnown RBP16.96■□□□□ 0.31
CHD3-210ENST00000479080 PALLDQ8WX93 1383 aa16.95■□□□□ 0.3
CHD3-210ENST00000479080 LAMB4A4D0S4 1761 aa16.94■□□□□ 0.3
CHD3-210ENST00000479080 PTCD1O75127 700 aaKnown RBP16.94■□□□□ 0.3
CHD3-210ENST00000479080 TRIM37O94972 964 aa16.94■□□□□ 0.3
CHD3-210ENST00000479080 TTC5Q8N0Z6 440 aa16.94■□□□□ 0.3
CHD3-210ENST00000479080 FMNL2Q96PY5 1086 aa16.94■□□□□ 0.3
CHD3-210ENST00000479080 BCL11BQ9C0K0 894 aaPredicted RBP16.94■□□□□ 0.3
CHD3-210ENST00000479080 RCAN3Q9UKA8 241 aa16.94■□□□□ 0.3
CHD3-210ENST00000479080 TCERG1O14776 1098 aaKnown RBP16.93■□□□□ 0.3
CHD3-210ENST00000479080 BCAR3O75815 825 aa16.93■□□□□ 0.3
CHD3-210ENST00000479080 HOXB7P09629 217 aa16.93■□□□□ 0.3
CHD3-210ENST00000479080 CT47B1P0C2W7 299 aaPredicted RBP16.93■□□□□ 0.3
CHD3-210ENST00000479080 SSH1Q8WYL5 1049 aa16.93■□□□□ 0.3
CHD3-210ENST00000479080 RNF123Q5XPI4 1314 aa16.93■□□□□ 0.3
CHD3-210ENST00000479080 LY75O60449 1722 aa16.93■□□□□ 0.3
CHD3-210ENST00000479080 BCL2L13Q9BXK5 485 aa16.92■□□□□ 0.3
CHD3-210ENST00000479080 USP16Q9Y5T5 823 aa16.92■□□□□ 0.3
CHD3-210ENST00000479080 ZNF831Q5JPB2 1677 aa16.91■□□□□ 0.3
CHD3-210ENST00000479080 ITPK1Q13572 414 aa16.91■□□□□ 0.3
CHD3-210ENST00000479080 DNAJC10Q8IXB1 793 aa16.91■□□□□ 0.3
CHD3-210ENST00000479080 MRPL50Q8N5N7 158 aaKnown RBP16.91■□□□□ 0.3
CHD3-210ENST00000479080 SOS1Q07889 1333 aaPredicted RBP16.91■□□□□ 0.3
CHD3-210ENST00000479080 SNRPA1P09661 255 aaKnown RBP16.9■□□□□ 0.3
CHD3-210ENST00000479080 PDIA6Q15084 440 aa16.9■□□□□ 0.3
CHD3-210ENST00000479080 PROSER3Q2NL68 480 aa16.9■□□□□ 0.3
CHD3-210ENST00000479080 LRP10Q7Z4F1 713 aa16.9■□□□□ 0.3
CHD3-210ENST00000479080 NECTIN2Q92692 538 aa16.9■□□□□ 0.3
CHD3-210ENST00000479080 RBM42Q9BTD8 480 aaKnown RBP16.9■□□□□ 0.3
CHD3-210ENST00000479080 RREB1Q92766 1687 aa16.9■□□□□ 0.3
CHD3-210ENST00000479080 LOC102724428A0A0B4J2F2 783 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 SIK1P57059 783 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 ALDH1L2Q3SY69 923 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 HDGFL1Q5TGJ6 251 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 VSIG10Q8N0Z9 540 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 TNNQ9UQP3 1299 aa16.89■□□□□ 0.29
CHD3-210ENST00000479080 COL5A3P25940 1745 aaPredicted RBP16.89■□□□□ 0.29
CHD3-210ENST00000479080 ANXA1P04083 346 aa16.88■□□□□ 0.29
CHD3-210ENST00000479080 EIF2S2P20042 333 aaKnown RBP16.88■□□□□ 0.29
CHD3-210ENST00000479080 KCNQ4P56696 695 aa16.88■□□□□ 0.29
CHD3-210ENST00000479080 G2E3Q7L622 706 aa16.88■□□□□ 0.29
CHD3-210ENST00000479080 SMARCC1Q92922 1105 aaPredicted RBP16.88■□□□□ 0.29
CHD3-210ENST00000479080 NBPF26B4DH59 902 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms