RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 LTN1O94822 1766 aa10.09□□□□□ -0.79
VMA21-203ENST00000477649 LMOD2Q6P5Q4 547 aa10.08□□□□□ -0.8
VMA21-203ENST00000477649 ANKRD24Q8TF21 1146 aa10.08□□□□□ -0.8
VMA21-203ENST00000477649 BCL2L13Q9BXK5 485 aa10.08□□□□□ -0.8
VMA21-203ENST00000477649 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.08□□□□□ -0.8
VMA21-203ENST00000477649 TSPYL4Q9UJ04 414 aa10.08□□□□□ -0.8
VMA21-203ENST00000477649 PXDNQ92626 1479 aa10.08□□□□□ -0.8
VMA21-203ENST00000477649 CEMIPQ8WUJ3 1361 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 FAM83GA6ND36 823 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 HOXB7P09629 217 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 HDAC1Q13547 482 aaPredicted RBP10.07□□□□□ -0.8
VMA21-203ENST00000477649 TAF7Q15545 349 aaPredicted RBP10.07□□□□□ -0.8
VMA21-203ENST00000477649 AKAP4Q5JQC9 854 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 NBPF6Q5VWK0 638 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 MCM10Q7L590 875 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 C8orf58Q8NAV2 365 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 LTV1Q96GA3 475 aaPredicted RBP10.07□□□□□ -0.8
VMA21-203ENST00000477649 NBPF4Q96M43 638 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 SLAIN2Q9P270 581 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 LRRC37A3O60309 1634 aa10.07□□□□□ -0.8
VMA21-203ENST00000477649 SOS2Q07890 1332 aaPredicted RBP10.07□□□□□ -0.8
VMA21-203ENST00000477649 CAMTA1Q9Y6Y1 1673 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 POTEFA5A3E0 1075 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 RLBP1P12271 317 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 DCTN1Q14203 1278 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 BRINP3Q76B58 766 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 ABCC4O15439 1325 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 ERBB3P21860 1342 aa10.06□□□□□ -0.8
VMA21-203ENST00000477649 XPCQ01831 940 aaPredicted RBP10.05□□□□□ -0.8
VMA21-203ENST00000477649 C1orf141Q5JVX7 400 aa10.05□□□□□ -0.8
VMA21-203ENST00000477649 ITPRIPQ8IWB1 547 aa10.05□□□□□ -0.8
VMA21-203ENST00000477649 TSPYL6Q8N831 410 aa10.05□□□□□ -0.8
VMA21-203ENST00000477649 ZBTB40Q9NUA8 1239 aa10.05□□□□□ -0.8
VMA21-203ENST00000477649 FAM208AQ9UK61 1670 aaKnown RBP10.04□□□□□ -0.8
VMA21-203ENST00000477649 SOCS7O14512 581 aa10.04□□□□□ -0.8
VMA21-203ENST00000477649 CCDC30Q5VVM6 783 aa10.04□□□□□ -0.8
VMA21-203ENST00000477649 SPNS2Q8IVW8 549 aa10.04□□□□□ -0.8
VMA21-203ENST00000477649 STK31Q9BXU1 1019 aa10.04□□□□□ -0.8
VMA21-203ENST00000477649 ZNF335Q9H4Z2 1342 aaPredicted RBP10.04□□□□□ -0.8
VMA21-203ENST00000477649 HSP90AB1P08238 724 aaKnown RBP10.03□□□□□ -0.8
VMA21-203ENST00000477649 ATN1P54259 1190 aaPredicted RBP10.03□□□□□ -0.8
VMA21-203ENST00000477649 INTS3Q68E01 1043 aaKnown RBP10.03□□□□□ -0.8
VMA21-203ENST00000477649 ZNF530Q6P9A1 599 aaPredicted RBP10.03□□□□□ -0.8
VMA21-203ENST00000477649 TMEM57Q8N5G2 664 aa10.03□□□□□ -0.8
VMA21-203ENST00000477649 IL17REQ8NFR9 667 aa10.03□□□□□ -0.8
VMA21-203ENST00000477649 RAPGEF4Q8WZA2 1011 aa10.03□□□□□ -0.8
VMA21-203ENST00000477649 SPG7Q9UQ90 795 aa10.03□□□□□ -0.8
VMA21-203ENST00000477649 LMO7Q8WWI1 1683 aa10.02□□□□□ -0.8
VMA21-203ENST00000477649 ZBTB7BO15156 539 aaPredicted RBP10.02□□□□□ -0.81
VMA21-203ENST00000477649 TATP17735 454 aaPredicted RBP10.02□□□□□ -0.81
VMA21-203ENST00000477649 TEFQ10587 303 aa10.02□□□□□ -0.81
VMA21-203ENST00000477649 PCDHB15Q9Y5E8 787 aa10.02□□□□□ -0.81
VMA21-203ENST00000477649 XIRP1Q702N8 1843 aaKnown RBP10.02□□□□□ -0.81
VMA21-203ENST00000477649 LTBP4Q8N2S1 1624 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 ZBTB7CA1YPR0 619 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 ELL2O00472 640 aaPredicted RBP10.01□□□□□ -0.81
VMA21-203ENST00000477649 IGHDP01880 384 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 PDE4AP27815 886 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 CCT4P50991 539 aaKnown RBP10.01□□□□□ -0.81
VMA21-203ENST00000477649 ZC3H6P61129 1189 aaKnown RBP10.01□□□□□ -0.81
VMA21-203ENST00000477649 GCC1Q96CN9 775 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 BACH2Q9BYV9 841 aa10.01□□□□□ -0.81
VMA21-203ENST00000477649 RNMTO43148 476 aaKnown RBP10□□□□□ -0.81
VMA21-203ENST00000477649 FAM161AQ3B820 660 aa10□□□□□ -0.81
VMA21-203ENST00000477649 SMC5Q8IY18 1101 aa10□□□□□ -0.81
VMA21-203ENST00000477649 USHBP1Q8N6Y0 703 aa10□□□□□ -0.81
VMA21-203ENST00000477649 LRRC59Q96AG4 307 aaKnown RBP10□□□□□ -0.81
VMA21-203ENST00000477649 AXIN2Q9Y2T1 843 aa10□□□□□ -0.81
VMA21-203ENST00000477649 COL18A1P39060 1754 aa9.99□□□□□ -0.81
VMA21-203ENST00000477649 EIF5BO60841 1220 aaKnown RBP9.99□□□□□ -0.81
VMA21-203ENST00000477649 CSB-PGBD3P0DP91 1061 aa9.99□□□□□ -0.81
VMA21-203ENST00000477649 ANP32AP39687 249 aaKnown RBP9.99□□□□□ -0.81
VMA21-203ENST00000477649 RPAP2Q8IXW5 612 aaPredicted RBP9.99□□□□□ -0.81
VMA21-203ENST00000477649 NLRP2Q9NX02 1062 aa9.99□□□□□ -0.81
VMA21-203ENST00000477649 TNNQ9UQP3 1299 aa9.99□□□□□ -0.81
VMA21-203ENST00000477649 CRYBG1Q9Y4K1 1723 aa9.99□□□□□ -0.81
VMA21-203ENST00000477649 PXDNLA1KZ92 1463 aa9.98□□□□□ -0.81
VMA21-203ENST00000477649 BTBD11A6QL63 1104 aa9.98□□□□□ -0.81
VMA21-203ENST00000477649 IFNL2Q8IZJ0 200 aa9.98□□□□□ -0.81
VMA21-203ENST00000477649 PRDM11Q9NQV5 511 aa9.98□□□□□ -0.81
VMA21-203ENST00000477649 WDR17Q8IZU2 1322 aa9.98□□□□□ -0.81
VMA21-203ENST00000477649 NHSL1Q5SYE7 1610 aa9.97□□□□□ -0.81
VMA21-203ENST00000477649 ADAMTS7Q9UKP4 1686 aa9.97□□□□□ -0.81
VMA21-203ENST00000477649 ST18O60284 1047 aa9.97□□□□□ -0.81
VMA21-203ENST00000477649 EIF4A1P60842 406 aaKnown RBP9.97□□□□□ -0.81
VMA21-203ENST00000477649 DCAF5Q96JK2 942 aa9.97□□□□□ -0.81
VMA21-203ENST00000477649 HDAC5Q9UQL6 1122 aa9.97□□□□□ -0.81
VMA21-203ENST00000477649 CACNA1FO60840 1977 aa9.96□□□□□ -0.81
VMA21-203ENST00000477649 HMMRO75330 724 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 GNAI3P08754 354 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 MNX1P50219 401 aaPredicted RBP9.96□□□□□ -0.82
VMA21-203ENST00000477649 HDGFL1Q5TGJ6 251 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 DDX17Q92841 729 aaKnown RBP9.96□□□□□ -0.82
VMA21-203ENST00000477649 CARD10Q9BWT7 1032 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 MIS18AQ9NYP9 233 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 PDZRN3Q9UPQ7 1066 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 HEG1Q9ULI3 1381 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 RGS12O14924 1447 aa9.96□□□□□ -0.82
VMA21-203ENST00000477649 PHKG2P15735 406 aa9.95□□□□□ -0.82
VMA21-203ENST00000477649 NUCB1Q02818 461 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms