RNA–Protein interactions for RNA: ENST00000476772.5

VEGFA-211, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 1,683 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-211ENST00000476772 SPATA31A7Q8IWB4 1347 aa37.04■■■■□ 3.52
VEGFA-211ENST00000476772 DDX54Q8TDD1 881 aaKnown RBP37.04■■■■□ 3.52
VEGFA-211ENST00000476772 CRBNQ96SW2 442 aa37.04■■■■□ 3.52
VEGFA-211ENST00000476772 BCL9LQ86UU0 1499 aa37.04■■■■□ 3.52
VEGFA-211ENST00000476772 SLC52A2Q9HAB3 445 aa37.03■■■■□ 3.52
VEGFA-211ENST00000476772 THRAP3Q9Y2W1 955 aaKnown RBP37.02■■■■□ 3.52
VEGFA-211ENST00000476772 TCERG1O14776 1098 aaKnown RBP37.01■■■■□ 3.52
VEGFA-211ENST00000476772 FNBP4Q8N3X1 1017 aaPredicted RBP37.01■■■■□ 3.52
VEGFA-211ENST00000476772 KCNQ3O43525 872 aa37■■■■□ 3.51
VEGFA-211ENST00000476772 MRPL50Q8N5N7 158 aaKnown RBP37■■■■□ 3.51
VEGFA-211ENST00000476772 CCDC9Q9Y3X0 531 aaKnown RBP37■■■■□ 3.51
VEGFA-211ENST00000476772 KIF16BQ96L93 1317 aa37■■■■□ 3.51
VEGFA-211ENST00000476772 BRPF1P55201 1214 aaPredicted RBP36.99■■■■□ 3.51
VEGFA-211ENST00000476772 NKX1-1Q15270 411 aaPredicted RBP36.99■■■■□ 3.51
VEGFA-211ENST00000476772 PPP4R2Q9NY27 417 aa36.99■■■■□ 3.51
VEGFA-211ENST00000476772 EIF4A1P60842 406 aaKnown RBP36.99■■■■□ 3.51
VEGFA-211ENST00000476772 PDE3AQ14432 1141 aa36.99■■■■□ 3.51
VEGFA-211ENST00000476772 ZKSCAN2Q63HK3 967 aa36.99■■■■□ 3.51
VEGFA-211ENST00000476772 NOB1Q9ULX3 412 aaKnown RBP36.98■■■■□ 3.51
VEGFA-211ENST00000476772 TNNQ9UQP3 1299 aa36.98■■■■□ 3.51
VEGFA-211ENST00000476772 MEX3CQ5U5Q3 659 aaKnown RBP36.97■■■■□ 3.51
VEGFA-211ENST00000476772 NFATC2IPQ8NCF5 419 aa36.97■■■■□ 3.51
VEGFA-211ENST00000476772 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.96■■■■□ 3.51
VEGFA-211ENST00000476772 CDCA7Q9BWT1 371 aaPredicted RBP36.96■■■■□ 3.51
VEGFA-211ENST00000476772 TNS2Q63HR2 1409 aa36.95■■■■□ 3.51
VEGFA-211ENST00000476772 PANK1Q8TE04 598 aa36.95■■■■□ 3.51
VEGFA-211ENST00000476772 VPS72Q15906 364 aa36.94■■■■□ 3.5
VEGFA-211ENST00000476772 SOS1Q07889 1333 aaPredicted RBP36.94■■■■□ 3.5
VEGFA-211ENST00000476772 CABP4P57796 275 aa36.93■■■■□ 3.5
VEGFA-211ENST00000476772 TOGARAM1Q9Y4F4 1720 aa36.93■■■■□ 3.5
VEGFA-211ENST00000476772 EXOC5O00471 708 aa36.93■■■■□ 3.5
VEGFA-211ENST00000476772 USP21Q9UK80 565 aa36.93■■■■□ 3.5
VEGFA-211ENST00000476772 BARGINQ6ZT62 677 aa36.92■■■■□ 3.5
VEGFA-211ENST00000476772 TRIM27P14373 513 aa36.91■■■■□ 3.5
VEGFA-211ENST00000476772 ATF7IPQ6VMQ6 1270 aa36.91■■■■□ 3.5
VEGFA-211ENST00000476772 ERVV-2B6SEH9 535 aa36.9■■■■□ 3.5
VEGFA-211ENST00000476772 IPO8O15397 1037 aaKnown RBP36.9■■■■□ 3.5
VEGFA-211ENST00000476772 RLBP1P12271 317 aa36.9■■■■□ 3.5
VEGFA-211ENST00000476772 CLUAP1Q96AJ1 413 aa36.9■■■■□ 3.5
VEGFA-211ENST00000476772 SLC39A6Q13433 755 aa36.89■■■■□ 3.5
VEGFA-211ENST00000476772 ZNF790Q6PG37 636 aa36.88■■■■□ 3.49
VEGFA-211ENST00000476772 DZIP1LQ8IYY4 767 aaKnown RBP36.87■■■■□ 3.49
VEGFA-211ENST00000476772 HEG1Q9ULI3 1381 aa36.87■■■■□ 3.49
VEGFA-211ENST00000476772 COG6Q9Y2V7 657 aa36.86■■■■□ 3.49
VEGFA-211ENST00000476772 HOXB7P09629 217 aa36.86■■■■□ 3.49
VEGFA-211ENST00000476772 DDB1Q16531 1140 aa36.86■■■■□ 3.49
VEGFA-211ENST00000476772 FTSJ3Q8IY81 847 aaKnown RBP36.86■■■■□ 3.49
VEGFA-211ENST00000476772 MS4A1P11836 297 aa36.85■■■■□ 3.49
VEGFA-211ENST00000476772 AFF2P51816 1311 aa36.84■■■■□ 3.49
VEGFA-211ENST00000476772 CCDC30Q5VVM6 783 aa36.84■■■■□ 3.49
VEGFA-211ENST00000476772 B4GALNT3Q6L9W6 998 aa36.84■■■■□ 3.49
VEGFA-211ENST00000476772 ARHGAP45Q92619 1136 aa36.84■■■■□ 3.49
VEGFA-211ENST00000476772 NECTIN2Q92692 538 aa36.83■■■■□ 3.49
VEGFA-211ENST00000476772 SLC4A2P04920 1241 aa36.82■■■■□ 3.48
VEGFA-211ENST00000476772 FAM98CQ17RN3 349 aaKnown RBP36.82■■■■□ 3.48
VEGFA-211ENST00000476772 HDGFL1Q5TGJ6 251 aa36.82■■■■□ 3.48
VEGFA-211ENST00000476772 STK31Q9BXU1 1019 aa36.81■■■■□ 3.48
VEGFA-211ENST00000476772 GIGYF1O75420 1035 aaPredicted RBP36.8■■■■□ 3.48
VEGFA-211ENST00000476772 TTC5Q8N0Z6 440 aa36.8■■■■□ 3.48
VEGFA-211ENST00000476772 PAPPAQ13219 1627 aa36.8■■■■□ 3.48
VEGFA-211ENST00000476772 EIF2S2P20042 333 aaKnown RBP36.78■■■■□ 3.48
VEGFA-211ENST00000476772 C5P01031 1676 aa36.78■■■■□ 3.48
VEGFA-211ENST00000476772 ITGB4P16144 1822 aa36.77■■■■□ 3.48
VEGFA-211ENST00000476772 CCDC136Q96JN2 1154 aa36.77■■■■□ 3.48
VEGFA-211ENST00000476772 CACNA1FO60840 1977 aa36.77■■■■□ 3.48
VEGFA-211ENST00000476772 MVPQ14764 893 aaKnown RBP36.77■■■■□ 3.48
VEGFA-211ENST00000476772 ZNF496Q96IT1 587 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-211ENST00000476772 PRAMEF22A3QJZ6 481 aa36.76■■■■□ 3.47
VEGFA-211ENST00000476772 API5Q9BZZ5 524 aaKnown RBP36.76■■■■□ 3.47
VEGFA-211ENST00000476772 TMOD3Q9NYL9 352 aa36.76■■■■□ 3.47
VEGFA-211ENST00000476772 TMEM57Q8N5G2 664 aa36.75■■■■□ 3.47
VEGFA-211ENST00000476772 UBR2Q8IWV8 1755 aa36.75■■■■□ 3.47
VEGFA-211ENST00000476772 GLI3P10071 1580 aa36.74■■■■□ 3.47
VEGFA-211ENST00000476772 G2E3Q7L622 706 aa36.74■■■■□ 3.47
VEGFA-211ENST00000476772 PTPRCP08575 1304 aa36.74■■■■□ 3.47
VEGFA-211ENST00000476772 DOT1LQ8TEK3 1739 aa36.74■■■■□ 3.47
VEGFA-211ENST00000476772 CHMP4AQ9BY43 222 aa36.74■■■■□ 3.47
VEGFA-211ENST00000476772 RGS12O14924 1447 aa36.73■■■■□ 3.47
VEGFA-211ENST00000476772 MARCH10Q8NA82 808 aaPredicted RBP36.73■■■■□ 3.47
VEGFA-211ENST00000476772 FMNL2Q96PY5 1086 aa36.73■■■■□ 3.47
VEGFA-211ENST00000476772 ABCC4O15439 1325 aa36.73■■■■□ 3.47
VEGFA-211ENST00000476772 ATRNO75882 1429 aa36.72■■■■□ 3.47
VEGFA-211ENST00000476772 ITPRIPQ8IWB1 547 aa36.71■■■■□ 3.47
VEGFA-211ENST00000476772 THSD7AQ9UPZ6 1657 aa36.71■■■■□ 3.47
VEGFA-211ENST00000476772 KCPQ6ZWJ8 1503 aa36.7■■■■□ 3.47
VEGFA-211ENST00000476772 PIGBQ92521 554 aa36.7■■■■□ 3.47
VEGFA-211ENST00000476772 GJD4Q96KN9 370 aaPredicted RBP36.7■■■■□ 3.47
VEGFA-211ENST00000476772 CHPF2Q9P2E5 772 aa36.7■■■■□ 3.47
VEGFA-211ENST00000476772 TRPC5Q9UL62 973 aaPredicted RBP36.68■■■■□ 3.46
VEGFA-211ENST00000476772 FLIIQ13045 1269 aa36.67■■■■□ 3.46
VEGFA-211ENST00000476772 BCL9O00512 1426 aa36.67■■■■□ 3.46
VEGFA-211ENST00000476772 SNRPA1P09661 255 aaKnown RBP36.67■■■■□ 3.46
VEGFA-211ENST00000476772 A0A0G2JS52 829 aa36.66■■■■□ 3.46
VEGFA-211ENST00000476772 MYT1Q01538 1121 aa36.66■■■■□ 3.46
VEGFA-211ENST00000476772 DDX19BQ9UMR2 479 aa36.66■■■■□ 3.46
VEGFA-211ENST00000476772 LAMB4A4D0S4 1761 aa36.65■■■■□ 3.46
VEGFA-211ENST00000476772 KAT6BQ8WYB5 2073 aa36.64■■■■□ 3.46
VEGFA-211ENST00000476772 SYTL4Q96C24 671 aaPredicted RBP36.63■■■■□ 3.45
VEGFA-211ENST00000476772 PHAXQ9H814 394 aaKnown RBP36.63■■■■□ 3.45
VEGFA-211ENST00000476772 DBF4Q9UBU7 674 aaPredicted RBP36.63■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms