RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 GNPATO15228 680 aa20.45■□□□□ 0.86
VARS-223ENST00000474643 MTHFSP49914 203 aa20.45■□□□□ 0.86
VARS-223ENST00000474643 AEBP1Q8IUX7 1158 aa20.45■□□□□ 0.86
VARS-223ENST00000474643 TAF1LQ8IZX4 1826 aa20.45■□□□□ 0.86
VARS-223ENST00000474643 AMER1Q5JTC6 1135 aaPredicted RBP20.44■□□□□ 0.86
VARS-223ENST00000474643 SSFA2P28290 1259 aa20.43■□□□□ 0.86
VARS-223ENST00000474643 LINC00116Q8NCU8 138 aa20.43■□□□□ 0.86
VARS-223ENST00000474643 ATG3Q9NT62 314 aa20.42■□□□□ 0.86
VARS-223ENST00000474643 NLGN2Q8NFZ4 835 aa20.41■□□□□ 0.86
VARS-223ENST00000474643 IL13P35225 146 aa20.4■□□□□ 0.86
VARS-223ENST00000474643 COL24A1Q17RW2 1714 aa20.39■□□□□ 0.86
VARS-223ENST00000474643 ITPK1Q13572 414 aa20.39■□□□□ 0.85
VARS-223ENST00000474643 RTCBQ9Y3I0 505 aaKnown RBP20.39■□□□□ 0.85
VARS-223ENST00000474643 DIAPH1O60610 1272 aaKnown RBP20.38■□□□□ 0.85
VARS-223ENST00000474643 HMOX1P09601 288 aa20.38■□□□□ 0.85
VARS-223ENST00000474643 SMIM5Q71RC9 77 aa20.38■□□□□ 0.85
VARS-223ENST00000474643 KDM6AO15550 1401 aaPredicted RBP20.37■□□□□ 0.85
VARS-223ENST00000474643 GRIN3BO60391 1043 aa20.37■□□□□ 0.85
VARS-223ENST00000474643 PTCD1O75127 700 aaKnown RBP20.37■□□□□ 0.85
VARS-223ENST00000474643 CD2APQ9Y5K6 639 aa20.37■□□□□ 0.85
VARS-223ENST00000474643 UBR3Q6ZT12 1888 aa20.37■□□□□ 0.85
VARS-223ENST00000474643 KDRP35968 1356 aa20.36■□□□□ 0.85
VARS-223ENST00000474643 GOLGB1Q14789 3259 aaKnown RBP20.36■□□□□ 0.85
VARS-223ENST00000474643 TRAPPC3LQ5T215 181 aa20.36■□□□□ 0.85
VARS-223ENST00000474643 U2SURPO15042 1029 aaKnown RBP20.35■□□□□ 0.85
VARS-223ENST00000474643 AKAP4Q5JQC9 854 aa20.35■□□□□ 0.85
VARS-223ENST00000474643 ZNF784Q8NCA9 323 aaPredicted RBP20.35■□□□□ 0.85
VARS-223ENST00000474643 NFATC2IPQ8NCF5 419 aa20.35■□□□□ 0.85
VARS-223ENST00000474643 CHD4Q14839 1912 aa20.35■□□□□ 0.85
VARS-223ENST00000474643 PER1O15534 1290 aaPredicted RBP20.34■□□□□ 0.85
VARS-223ENST00000474643 RFC4P35249 363 aa20.34■□□□□ 0.85
VARS-223ENST00000474643 AMIGO3Q86WK7 504 aa20.34■□□□□ 0.85
VARS-223ENST00000474643 ADRA2BP18089 450 aa20.31■□□□□ 0.84
VARS-223ENST00000474643 CFAP53Q96M91 514 aa20.31■□□□□ 0.84
VARS-223ENST00000474643 CNTNAP4Q9C0A0 1308 aa20.3■□□□□ 0.84
VARS-223ENST00000474643 RC3H1Q5TC82 1133 aaKnown RBP20.3■□□□□ 0.84
VARS-223ENST00000474643 MMP10P09238 476 aa20.29■□□□□ 0.84
VARS-223ENST00000474643 YBX3P16989 372 aaKnown RBP eCLIP20.29■□□□□ 0.842e-8■□□□□ 10.1
VARS-223ENST00000474643 NLGN1Q8N2Q7 840 aa20.29■□□□□ 0.84
VARS-223ENST00000474643 WWC3Q9ULE0 1092 aa20.29■□□□□ 0.84
VARS-223ENST00000474643 NPC1L1Q9UHC9 1359 aa20.29■□□□□ 0.84
VARS-223ENST00000474643 SLC4A9Q96Q91 983 aa20.28■□□□□ 0.84
VARS-223ENST00000474643 SLC52A2Q9HAB3 445 aa20.28■□□□□ 0.84
VARS-223ENST00000474643 ZNF831Q5JPB2 1677 aa20.27■□□□□ 0.84
VARS-223ENST00000474643 RPS6KA4O75676 772 aa20.27■□□□□ 0.84
VARS-223ENST00000474643 ARHGEF1Q92888 912 aaKnown RBP20.27■□□□□ 0.84
VARS-223ENST00000474643 PARP3Q9Y6F1 533 aa20.27■□□□□ 0.84
VARS-223ENST00000474643 SCN11AQ9UI33 1791 aa20.26■□□□□ 0.83
VARS-223ENST00000474643 CRKLP46109 303 aaKnown RBP20.26■□□□□ 0.83
VARS-223ENST00000474643 MTHFSDQ2M296 383 aaKnown RBP20.26■□□□□ 0.83
VARS-223ENST00000474643 COL5A3P25940 1745 aaPredicted RBP20.25■□□□□ 0.83
VARS-223ENST00000474643 RNMTO43148 476 aaKnown RBP20.25■□□□□ 0.83
VARS-223ENST00000474643 TTC5Q8N0Z6 440 aa20.25■□□□□ 0.83
VARS-223ENST00000474643 LGR6Q9HBX8 967 aa20.25■□□□□ 0.83
VARS-223ENST00000474643 CCDC87Q9NVE4 849 aa20.25■□□□□ 0.83
VARS-223ENST00000474643 TEFQ10587 303 aa20.24■□□□□ 0.83
VARS-223ENST00000474643 DDX10Q13206 875 aaKnown RBP20.24■□□□□ 0.83
VARS-223ENST00000474643 GAS2L2Q8NHY3 880 aa20.24■□□□□ 0.83
VARS-223ENST00000474643 NUDCQ9Y266 331 aa20.24■□□□□ 0.83
VARS-223ENST00000474643 CICQ96RK0 1608 aaPredicted RBP20.23■□□□□ 0.83
VARS-223ENST00000474643 ZPR1O75312 459 aa20.22■□□□□ 0.83
VARS-223ENST00000474643 GIGYF1O75420 1035 aaPredicted RBP20.22■□□□□ 0.83
VARS-223ENST00000474643 SLC39A6Q13433 755 aa20.22■□□□□ 0.83
VARS-223ENST00000474643 GYS1P13807 737 aa20.21■□□□□ 0.83
VARS-223ENST00000474643 GNAT3A8MTJ3 354 aa20.2■□□□□ 0.82
VARS-223ENST00000474643 DNAJC10Q8IXB1 793 aa20.2■□□□□ 0.82
VARS-223ENST00000474643 MRC1P22897 1456 aa20.19■□□□□ 0.82
VARS-223ENST00000474643 SRP68Q9UHB9 627 aaKnown RBP20.19■□□□□ 0.82
VARS-223ENST00000474643 TJP1Q07157 1748 aa20.19■□□□□ 0.82
VARS-223ENST00000474643 COL3A1P02461 1466 aaPredicted RBP20.18■□□□□ 0.82
VARS-223ENST00000474643 TGFB2P61812 414 aa20.18■□□□□ 0.82
VARS-223ENST00000474643 C4AP0C0L4 1744 aa20.17■□□□□ 0.82
VARS-223ENST00000474643 NEFMP07197 916 aa20.17■□□□□ 0.82
VARS-223ENST00000474643 U2AF1L5P0DN76 240 aaPredicted RBP20.17■□□□□ 0.82
VARS-223ENST00000474643 U2AF1Q01081 240 aaKnown RBP eCLIP20.17■□□□□ 0.82
VARS-223ENST00000474643 NPM2Q86SE8 214 aaKnown RBP20.17■□□□□ 0.82
VARS-223ENST00000474643 BCS1LQ9Y276 419 aa20.17■□□□□ 0.82
VARS-223ENST00000474643 USP42Q9H9J4 1324 aaKnown RBP20.17■□□□□ 0.82
VARS-223ENST00000474643 STARD3NLO95772 234 aa20.16■□□□□ 0.82
VARS-223ENST00000474643 PRKAR2BP31323 418 aa20.16■□□□□ 0.82
VARS-223ENST00000474643 RTF1Q92541 710 aaKnown RBP20.16■□□□□ 0.82
VARS-223ENST00000474643 VIRMAQ69YN4 1812 aaKnown RBP20.16■□□□□ 0.82
VARS-223ENST00000474643 A0A0G2JLW4 131 aa20.15■□□□□ 0.82
VARS-223ENST00000474643 INTS5Q6P9B9 1019 aaKnown RBP20.15■□□□□ 0.82
VARS-223ENST00000474643 C10orf71Q711Q0 1435 aa20.15■□□□□ 0.82
VARS-223ENST00000474643 MYH14Q7Z406 1995 aaKnown RBP20.15■□□□□ 0.82
VARS-223ENST00000474643 PXDNLA1KZ92 1463 aa20.14■□□□□ 0.81
VARS-223ENST00000474643 CYP19A1P11511 503 aaPredicted RBP20.14■□□□□ 0.81
VARS-223ENST00000474643 CANXP27824 592 aaKnown RBP20.14■□□□□ 0.81
VARS-223ENST00000474643 PPP2R1AP30153 589 aa20.14■□□□□ 0.81
VARS-223ENST00000474643 C1QTNF8P60827 252 aa20.14■□□□□ 0.81
VARS-223ENST00000474643 FKBP8Q14318 412 aa20.14■□□□□ 0.81
VARS-223ENST00000474643 VSIG10Q8N0Z9 540 aa20.14■□□□□ 0.81
VARS-223ENST00000474643 ZNF526Q8TF50 670 aaPredicted RBP20.14■□□□□ 0.81
VARS-223ENST00000474643 GPBP1L1Q9HC44 474 aaPredicted RBP20.14■□□□□ 0.81
VARS-223ENST00000474643 ZNF330Q9Y3S2 320 aaPredicted RBP20.14■□□□□ 0.81
VARS-223ENST00000474643 ATP10DQ9P241 1426 aa20.13■□□□□ 0.81
VARS-223ENST00000474643 COL15A1P39059 1388 aa20.13■□□□□ 0.81
VARS-223ENST00000474643 SENP3-EIF4A1A0A087X0R7 540 aa20.13■□□□□ 0.81
VARS-223ENST00000474643 FCHSD2O94868 740 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms