RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 A0A0G2JLW4 131 aa25.77■■□□□ 1.72
SHH-205ENST00000472308 ATP6V1AP38606 617 aa25.77■■□□□ 1.72
SHH-205ENST00000472308 TGFB2P61812 414 aa25.77■■□□□ 1.72
SHH-205ENST00000472308 SPG7Q9UQ90 795 aa25.77■■□□□ 1.72
SHH-205ENST00000472308 KDRP35968 1356 aa25.77■■□□□ 1.72
SHH-205ENST00000472308 ATG3Q9NT62 314 aa25.76■■□□□ 1.71
SHH-205ENST00000472308 WDR90Q96KV7 1748 aa25.76■■□□□ 1.71
SHH-205ENST00000472308 PCNTO95613 3336 aa25.74■■□□□ 1.71
SHH-205ENST00000472308 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.74■■□□□ 1.71
SHH-205ENST00000472308 BRCA1P38398 1863 aaKnown RBP25.74■■□□□ 1.71
SHH-205ENST00000472308 PHKG2P15735 406 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 TMF1P82094 1093 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 ARHGAP27Q6ZUM4 889 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 SLC4A9Q96Q91 983 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 CARD14Q9BXL6 1004 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 C4AP0C0L4 1744 aa25.73■■□□□ 1.71
SHH-205ENST00000472308 DPEP1P16444 411 aa25.72■■□□□ 1.71
SHH-205ENST00000472308 EYA1Q99502 592 aa25.72■■□□□ 1.71
SHH-205ENST00000472308 HTRA3P83110 453 aa25.7■■□□□ 1.7
SHH-205ENST00000472308 NLGN1Q8N2Q7 840 aa25.7■■□□□ 1.7
SHH-205ENST00000472308 RTCBQ9Y3I0 505 aaKnown RBP25.7■■□□□ 1.7
SHH-205ENST00000472308 ZNF831Q5JPB2 1677 aa25.7■■□□□ 1.7
SHH-205ENST00000472308 WASHC2AQ641Q2 1341 aa25.69■■□□□ 1.7
SHH-205ENST00000472308 PPM1GO15355 546 aaPredicted RBP25.69■■□□□ 1.7
SHH-205ENST00000472308 TRAPPC3LQ5T215 181 aa25.69■■□□□ 1.7
SHH-205ENST00000472308 IFNL2Q8IZJ0 200 aa25.69■■□□□ 1.7
SHH-205ENST00000472308 RBM46Q8TBY0 533 aaKnown RBP25.69■■□□□ 1.7
SHH-205ENST00000472308 COL5A3P25940 1745 aaPredicted RBP25.68■■□□□ 1.7
SHH-205ENST00000472308 FCHSD2O94868 740 aa25.68■■□□□ 1.7
SHH-205ENST00000472308 GYS1P13807 737 aa25.68■■□□□ 1.7
SHH-205ENST00000472308 KCNA3P22001 575 aa25.68■■□□□ 1.7
SHH-205ENST00000472308 ARHGEF1Q92888 912 aaKnown RBP25.68■■□□□ 1.7
SHH-205ENST00000472308 C9orf131Q5VYM1 1079 aa25.67■■□□□ 1.7
SHH-205ENST00000472308 CCDC87Q9NVE4 849 aa25.67■■□□□ 1.7
SHH-205ENST00000472308 COL13A1Q5TAT6 717 aaPredicted RBP25.66■■□□□ 1.7
SHH-205ENST00000472308 JMYQ8N9B5 988 aa25.66■■□□□ 1.7
SHH-205ENST00000472308 KLRG1Q96E93 195 aa25.66■■□□□ 1.7
SHH-205ENST00000472308 PLEKHG2Q9H7P9 1386 aa25.66■■□□□ 1.7
SHH-205ENST00000472308 ARFGEF1Q9Y6D6 1849 aa25.65■■□□□ 1.7
SHH-205ENST00000472308 ADRA2BP18089 450 aa25.65■■□□□ 1.7
SHH-205ENST00000472308 CNTNAP4Q9C0A0 1308 aa25.64■■□□□ 1.7
SHH-205ENST00000472308 KCPQ6ZWJ8 1503 aa25.64■■□□□ 1.7
SHH-205ENST00000472308 RC3H1Q5TC82 1133 aaKnown RBP25.64■■□□□ 1.7
SHH-205ENST00000472308 PARP3Q9Y6F1 533 aa25.62■■□□□ 1.69
SHH-205ENST00000472308 RPS6KA4O75676 772 aa25.61■■□□□ 1.69
SHH-205ENST00000472308 FSTL1Q12841 308 aa25.61■■□□□ 1.69
SHH-205ENST00000472308 DCAF5Q96JK2 942 aa25.61■■□□□ 1.69
SHH-205ENST00000472308 RBM42Q9BTD8 480 aaKnown RBP25.61■■□□□ 1.69
SHH-205ENST00000472308 MYH14Q7Z406 1995 aaKnown RBP25.6■■□□□ 1.69
SHH-205ENST00000472308 RFC4P35249 363 aa25.6■■□□□ 1.69
SHH-205ENST00000472308 POLKQ9UBT6 870 aa25.6■■□□□ 1.69
SHH-205ENST00000472308 CDCA8Q53HL2 280 aa25.59■■□□□ 1.69
SHH-205ENST00000472308 C16orf71Q8IYS4 520 aaPredicted RBP25.59■■□□□ 1.69
SHH-205ENST00000472308 KDM6AO15550 1401 aaPredicted RBP25.58■■□□□ 1.69
SHH-205ENST00000472308 ERVV-2B6SEH9 535 aa25.58■■□□□ 1.69
SHH-205ENST00000472308 EIF4A2Q14240 407 aaKnown RBP25.58■■□□□ 1.69
SHH-205ENST00000472308 PIM2Q9P1W9 311 aa25.58■■□□□ 1.69
SHH-205ENST00000472308 DDR1Q08345 913 aa25.56■■□□□ 1.68
SHH-205ENST00000472308 RNF181Q9P0P0 153 aa25.56■■□□□ 1.68
SHH-205ENST00000472308 KDM2BQ8NHM5 1336 aa25.56■■□□□ 1.68
SHH-205ENST00000472308 TNRC6CQ9HCJ0 1690 aaKnown RBP25.55■■□□□ 1.68
SHH-205ENST00000472308 DALRD3Q5D0E6 543 aaKnown RBP25.55■■□□□ 1.68
SHH-205ENST00000472308 SRP68Q9UHB9 627 aaKnown RBP25.55■■□□□ 1.68
SHH-205ENST00000472308 FKBP8Q14318 412 aa25.54■■□□□ 1.68
SHH-205ENST00000472308 RRAGCQ9HB90 399 aa25.54■■□□□ 1.68
SHH-205ENST00000472308 USP42Q9H9J4 1324 aaKnown RBP25.53■■□□□ 1.68
SHH-205ENST00000472308 CAPN15O75808 1086 aa25.52■■□□□ 1.68
SHH-205ENST00000472308 CHRNA5P30532 468 aa25.52■■□□□ 1.68
SHH-205ENST00000472308 CRKLP46109 303 aaKnown RBP25.51■■□□□ 1.67
SHH-205ENST00000472308 ADAMTS7Q9UKP4 1686 aa25.51■■□□□ 1.67
SHH-205ENST00000472308 TJP1Q07157 1748 aa25.51■■□□□ 1.67
SHH-205ENST00000472308 SBF1O95248 1867 aa25.51■■□□□ 1.67
SHH-205ENST00000472308 HSP90AB1P08238 724 aaKnown RBP25.5■■□□□ 1.67
SHH-205ENST00000472308 PTCD1O75127 700 aaKnown RBP25.49■■□□□ 1.67
SHH-205ENST00000472308 TNS4Q8IZW8 715 aa25.49■■□□□ 1.67
SHH-205ENST00000472308 CABP4P57796 275 aa25.48■■□□□ 1.67
SHH-205ENST00000472308 POLRMTO00411 1230 aaKnown RBP25.47■■□□□ 1.67
SHH-205ENST00000472308 TNNT2P45379 298 aaPredicted RBP25.47■■□□□ 1.67
SHH-205ENST00000472308 ZNF530Q6P9A1 599 aaPredicted RBP25.47■■□□□ 1.67
SHH-205ENST00000472308 SMC1BQ8NDV3 1235 aa25.47■■□□□ 1.67
SHH-205ENST00000472308 RASSF7Q02833 373 aa25.46■■□□□ 1.67
SHH-205ENST00000472308 PRELPP51888 382 aa25.45■■□□□ 1.66
SHH-205ENST00000472308 PLEKHO1Q53GL0 409 aaPredicted RBP25.45■■□□□ 1.66
SHH-205ENST00000472308 TM4SF1P30408 202 aa25.44■■□□□ 1.66
SHH-205ENST00000472308 INTS5Q6P9B9 1019 aaKnown RBP25.44■■□□□ 1.66
SHH-205ENST00000472308 ZC3H4Q9UPT8 1303 aaKnown RBP25.43■■□□□ 1.66
SHH-205ENST00000472308 NFATC2IPQ8NCF5 419 aa25.42■■□□□ 1.66
SHH-205ENST00000472308 MTHFSP49914 203 aa25.41■■□□□ 1.66
SHH-205ENST00000472308 AMOTQ4VCS5 1084 aa25.41■■□□□ 1.66
SHH-205ENST00000472308 AEBP1Q8IUX7 1158 aa25.41■■□□□ 1.66
SHH-205ENST00000472308 HSPA1AP0DMV8 641 aaKnown RBP25.39■■□□□ 1.66
SHH-205ENST00000472308 HSPA1BP0DMV9 641 aaKnown RBP25.39■■□□□ 1.66
SHH-205ENST00000472308 NRXN2Q9P2S2 1712 aa25.38■■□□□ 1.65
SHH-205ENST00000472308 USPL1Q5W0Q7 1092 aa25.38■■□□□ 1.65
SHH-205ENST00000472308 TIAM2Q8IVF5 1701 aa25.37■■□□□ 1.65
SHH-205ENST00000472308 AFDNP55196 1824 aaKnown RBP25.37■■□□□ 1.65
SHH-205ENST00000472308 DLEC1Q9Y238 1755 aa25.37■■□□□ 1.65
SHH-205ENST00000472308 GLTPD2A6NH11 291 aa25.37■■□□□ 1.65
SHH-205ENST00000472308 LMNB1P20700 586 aa25.37■■□□□ 1.65
SHH-205ENST00000472308 SOS1Q07889 1333 aaPredicted RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms