RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.08□□□□□ -0.64
USP48-207ENST00000471752 POLD1P28340 1107 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 ATP6V1AP38606 617 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 GPR162Q16538 588 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 CC2D1BQ5T0F9 858 aaKnown RBP11.08□□□□□ -0.64
USP48-207ENST00000471752 SULT6B1Q6IMI4 303 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 ZNF530Q6P9A1 599 aaPredicted RBP11.08□□□□□ -0.64
USP48-207ENST00000471752 LGR6Q9HBX8 967 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 KNSTRNQ9Y448 316 aa11.08□□□□□ -0.64
USP48-207ENST00000471752 MTHFSP49914 203 aa11.07□□□□□ -0.64
USP48-207ENST00000471752 SMARCC1Q92922 1105 aaPredicted RBP11.07□□□□□ -0.64
USP48-207ENST00000471752 KDM6AO15550 1401 aaPredicted RBP11.07□□□□□ -0.64
USP48-207ENST00000471752 PKD1L3Q7Z443 1732 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 ANKRD26Q9UPS8 1709 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 MAP3K5Q99683 1374 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 CEP350Q5VT06 3117 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 HMOX1P09601 288 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 PLEKHO1Q53GL0 409 aaPredicted RBP11.06□□□□□ -0.64
USP48-207ENST00000471752 NFATC2IPQ8NCF5 419 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 AK7Q96M32 723 aa11.06□□□□□ -0.64
USP48-207ENST00000471752 RBM42Q9BTD8 480 aaKnown RBP11.06□□□□□ -0.64
USP48-207ENST00000471752 ITGB4P16144 1822 aa11.05□□□□□ -0.64
USP48-207ENST00000471752 GNPATO15228 680 aa11.05□□□□□ -0.64
USP48-207ENST00000471752 PTCD1O75127 700 aaKnown RBP11.05□□□□□ -0.64
USP48-207ENST00000471752 U3KPZ7 1027 aaPredicted RBP11.05□□□□□ -0.64
USP48-207ENST00000471752 ERVV-2B6SEH9 535 aa11.04□□□□□ -0.64
USP48-207ENST00000471752 DCAF5Q96JK2 942 aa11.04□□□□□ -0.64
USP48-207ENST00000471752 CABP4P57796 275 aa11.03□□□□□ -0.64
USP48-207ENST00000471752 SLC39A6Q13433 755 aa11.03□□□□□ -0.64
USP48-207ENST00000471752 ARHGEF1Q92888 912 aaKnown RBP11.03□□□□□ -0.64
USP48-207ENST00000471752 C4BP0C0L5 1744 aa11.03□□□□□ -0.64
USP48-207ENST00000471752 COL24A1Q17RW2 1714 aa11.03□□□□□ -0.64
USP48-207ENST00000471752 KDRP35968 1356 aa11.03□□□□□ -0.64
USP48-207ENST00000471752 C5P01031 1676 aa11.02□□□□□ -0.64
USP48-207ENST00000471752 MTHFSDQ2M296 383 aaKnown RBP11.02□□□□□ -0.65
USP48-207ENST00000471752 SRP68Q9UHB9 627 aaKnown RBP11.02□□□□□ -0.65
USP48-207ENST00000471752 QSER1Q2KHR3 1735 aa11.01□□□□□ -0.65
USP48-207ENST00000471752 TAF1LQ8IZX4 1826 aa11.01□□□□□ -0.65
USP48-207ENST00000471752 SSFA2P28290 1259 aa11.01□□□□□ -0.65
USP48-207ENST00000471752 FLAD1Q8NFF5 587 aa11.01□□□□□ -0.65
USP48-207ENST00000471752 MMP10P09238 476 aa11□□□□□ -0.65
USP48-207ENST00000471752 AMOTQ4VCS5 1084 aa11□□□□□ -0.65
USP48-207ENST00000471752 INTS5Q6P9B9 1019 aaKnown RBP11□□□□□ -0.65
USP48-207ENST00000471752 CD2APQ9Y5K6 639 aa11□□□□□ -0.65
USP48-207ENST00000471752 A0A0G2JLW4 131 aa10.99□□□□□ -0.65
USP48-207ENST00000471752 RNMTO43148 476 aaKnown RBP10.99□□□□□ -0.65
USP48-207ENST00000471752 GYS1P13807 737 aa10.99□□□□□ -0.65
USP48-207ENST00000471752 TRAPPC3LQ5T215 181 aa10.99□□□□□ -0.65
USP48-207ENST00000471752 DNAJC10Q8IXB1 793 aa10.99□□□□□ -0.65
USP48-207ENST00000471752 PHACTR3Q96KR7 559 aa10.99□□□□□ -0.65
USP48-207ENST00000471752 UBR3Q6ZT12 1888 aa10.98□□□□□ -0.65
USP48-207ENST00000471752 DIAPH1O60610 1272 aaKnown RBP10.98□□□□□ -0.65
USP48-207ENST00000471752 RPS6KA4O75676 772 aa10.98□□□□□ -0.65
USP48-207ENST00000471752 CRKLP46109 303 aaKnown RBP10.98□□□□□ -0.65
USP48-207ENST00000471752 C1orf141Q5JVX7 400 aa10.98□□□□□ -0.65
USP48-207ENST00000471752 RC3H1Q5TC82 1133 aaKnown RBP10.98□□□□□ -0.65
USP48-207ENST00000471752 RTCBQ9Y3I0 505 aaKnown RBP10.98□□□□□ -0.65
USP48-207ENST00000471752 KCNQ3O43525 872 aa10.97□□□□□ -0.65
USP48-207ENST00000471752 HSP90AB1P08238 724 aaKnown RBP10.97□□□□□ -0.65
USP48-207ENST00000471752 FKBP8Q14318 412 aa10.97□□□□□ -0.65
USP48-207ENST00000471752 AKAP4Q5JQC9 854 aa10.97□□□□□ -0.65
USP48-207ENST00000471752 IL17REQ8NFR9 667 aa10.97□□□□□ -0.65
USP48-207ENST00000471752 SLC52A2Q9HAB3 445 aa10.97□□□□□ -0.65
USP48-207ENST00000471752 MYH14Q7Z406 1995 aaKnown RBP10.96□□□□□ -0.65
USP48-207ENST00000471752 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.65
USP48-207ENST00000471752 CAPN15O75808 1086 aa10.96□□□□□ -0.65
USP48-207ENST00000471752 KCNA3P22001 575 aa10.96□□□□□ -0.65
USP48-207ENST00000471752 DDR1Q08345 913 aa10.96□□□□□ -0.65
USP48-207ENST00000471752 COL3A1P02461 1466 aaPredicted RBP10.95□□□□□ -0.66
USP48-207ENST00000471752 CNTNAP4Q9C0A0 1308 aa10.95□□□□□ -0.66
USP48-207ENST00000471752 DPEP1P16444 411 aa10.95□□□□□ -0.66
USP48-207ENST00000471752 GRIN3BO60391 1043 aa10.94□□□□□ -0.66
USP48-207ENST00000471752 CYP19A1P11511 503 aaPredicted RBP10.94□□□□□ -0.66
USP48-207ENST00000471752 RFC4P35249 363 aa10.94□□□□□ -0.66
USP48-207ENST00000471752 ZNF526Q8TF50 670 aaPredicted RBP10.94□□□□□ -0.66
USP48-207ENST00000471752 BCL2L12Q9HB09 334 aa10.94□□□□□ -0.66
USP48-207ENST00000471752 C1QTNF8P60827 252 aa10.93□□□□□ -0.66
USP48-207ENST00000471752 USPL1Q5W0Q7 1092 aa10.93□□□□□ -0.66
USP48-207ENST00000471752 NLGN1Q8N2Q7 840 aa10.93□□□□□ -0.66
USP48-207ENST00000471752 ZBTB1Q9Y2K1 713 aa10.93□□□□□ -0.66
USP48-207ENST00000471752 PLEKHG2Q9H7P9 1386 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 PRAMEF22A3QJZ6 481 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 PPP2R1AP30153 589 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 TM4SF1P30408 202 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 CHRNA5P30532 468 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 ZNF496Q96IT1 587 aaPredicted RBP10.92□□□□□ -0.66
USP48-207ENST00000471752 CCDC87Q9NVE4 849 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 PXDNLA1KZ92 1463 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 ATP10DQ9P241 1426 aa10.92□□□□□ -0.66
USP48-207ENST00000471752 USP42Q9H9J4 1324 aaKnown RBP10.91□□□□□ -0.66
USP48-207ENST00000471752 CANXP27824 592 aaKnown RBP10.91□□□□□ -0.66
USP48-207ENST00000471752 PIP4K2AP48426 406 aaPredicted RBP10.91□□□□□ -0.66
USP48-207ENST00000471752 DCTN1Q14203 1278 aa10.91□□□□□ -0.66
USP48-207ENST00000471752 RSPH6AQ9H0K4 717 aa10.91□□□□□ -0.66
USP48-207ENST00000471752 BCS1LQ9Y276 419 aa10.91□□□□□ -0.66
USP48-207ENST00000471752 CICQ96RK0 1608 aaPredicted RBP10.91□□□□□ -0.66
USP48-207ENST00000471752 NPC1L1Q9UHC9 1359 aa10.9□□□□□ -0.66
USP48-207ENST00000471752 SOS1Q07889 1333 aaPredicted RBP10.9□□□□□ -0.66
USP48-207ENST00000471752 KCPQ6ZWJ8 1503 aa10.9□□□□□ -0.66
USP48-207ENST00000471752 CHD4Q14839 1912 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms