RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 COL22A1Q8NFW1 1626 aaPredicted RBP21.31■■□□□ 1
SMARCD3-206ENST00000470588 CEMIPQ8WUJ3 1361 aa21.31■■□□□ 1
SMARCD3-206ENST00000470588 C1orf141Q5JVX7 400 aa21.31■■□□□ 1
SMARCD3-206ENST00000470588 ZNF530Q6P9A1 599 aaPredicted RBP21.31■■□□□ 1
SMARCD3-206ENST00000470588 RGS12O14924 1447 aa21.3■■□□□ 1
SMARCD3-206ENST00000470588 STK31Q9BXU1 1019 aa21.3■■□□□ 1
SMARCD3-206ENST00000470588 TATP17735 454 aaPredicted RBP21.29■■□□□ 1
SMARCD3-206ENST00000470588 CHMP4AQ9BY43 222 aa21.28■■□□□ 1
SMARCD3-206ENST00000470588 WDR17Q8IZU2 1322 aa21.27■■□□□ 1
SMARCD3-206ENST00000470588 CHD1LQ86WJ1 897 aa21.26■□□□□ 0.99
SMARCD3-206ENST00000470588 SIRT2Q8IXJ6 389 aa21.26■□□□□ 0.99
SMARCD3-206ENST00000470588 C1orf115Q9H7X2 142 aa21.26■□□□□ 0.99
SMARCD3-206ENST00000470588 COL5A2P05997 1499 aaPredicted RBP21.26■□□□□ 0.99
SMARCD3-206ENST00000470588 VIRMAQ69YN4 1812 aaKnown RBP21.26■□□□□ 0.99
SMARCD3-206ENST00000470588 CCT4P50991 539 aaKnown RBP21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 LGR6Q9HBX8 967 aa21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 SPG7Q9UQ90 795 aa21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 OVOS2A0A0G2JMS6 1433 aa21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 COL14A1Q05707 1796 aaKnown RBP21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 COL16A1Q07092 1604 aaPredicted RBP21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 G2E3Q7L622 706 aa21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 RPAP2Q8IXW5 612 aaPredicted RBP21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 PARP4Q9UKK3 1724 aaKnown RBP21.25■□□□□ 0.99
SMARCD3-206ENST00000470588 TOM1L2Q6ZVM7 507 aa21.24■□□□□ 0.99
SMARCD3-206ENST00000470588 EVA1CP58658 441 aa21.23■□□□□ 0.99
SMARCD3-206ENST00000470588 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.23■□□□□ 0.99
SMARCD3-206ENST00000470588 HOXB7P09629 217 aa21.23■□□□□ 0.99
SMARCD3-206ENST00000470588 PIP4K2BP78356 416 aa21.23■□□□□ 0.99
SMARCD3-206ENST00000470588 ANKRD44Q8N8A2 993 aa21.23■□□□□ 0.99
SMARCD3-206ENST00000470588 PKD1L3Q7Z443 1732 aa21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 UBAP1LF5GYI3 381 aa21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 RNMTO43148 476 aaKnown RBP21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 TEFQ10587 303 aa21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 ANKRD45Q5TZF3 282 aa21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 CACNA1FO60840 1977 aa21.22■□□□□ 0.99
SMARCD3-206ENST00000470588 EIF4A1P60842 406 aaKnown RBP21.21■□□□□ 0.99
SMARCD3-206ENST00000470588 MEGF6O75095 1541 aa21.21■□□□□ 0.99
SMARCD3-206ENST00000470588 FLIIQ13045 1269 aa21.2■□□□□ 0.99
SMARCD3-206ENST00000470588 LNPKQ9C0E8 428 aa21.2■□□□□ 0.99
SMARCD3-206ENST00000470588 DCTPP1Q9H773 170 aa21.2■□□□□ 0.99
SMARCD3-206ENST00000470588 SEC24BO95487 1268 aa21.2■□□□□ 0.98
SMARCD3-206ENST00000470588 MYT1Q01538 1121 aa21.19■□□□□ 0.98
SMARCD3-206ENST00000470588 MPRIPQ6WCQ1 1025 aa21.19■□□□□ 0.98
SMARCD3-206ENST00000470588 CARD10Q9BWT7 1032 aa21.19■□□□□ 0.98
SMARCD3-206ENST00000470588 STRN4Q9NRL3 753 aa21.19■□□□□ 0.98
SMARCD3-206ENST00000470588 BTBD11A6QL63 1104 aa21.18■□□□□ 0.98
SMARCD3-206ENST00000470588 UPF2Q9HAU5 1272 aaKnown RBP21.18■□□□□ 0.98
SMARCD3-206ENST00000470588 ADAMTS7Q9UKP4 1686 aa21.18■□□□□ 0.98
SMARCD3-206ENST00000470588 HDGFL1Q5TGJ6 251 aa21.18■□□□□ 0.98
SMARCD3-206ENST00000470588 KDM3BQ7LBC6 1761 aa21.18■□□□□ 0.98
SMARCD3-206ENST00000470588 F6X3S4 739 aa21.17■□□□□ 0.98
SMARCD3-206ENST00000470588 CEP85Q6P2H3 762 aa21.17■□□□□ 0.98
SMARCD3-206ENST00000470588 SLC4A10Q6U841 1118 aa21.17■□□□□ 0.98
SMARCD3-206ENST00000470588 IFNL2Q8IZJ0 200 aa21.17■□□□□ 0.98
SMARCD3-206ENST00000470588 MEIS3Q99687 375 aa21.17■□□□□ 0.98
SMARCD3-206ENST00000470588 HSP90AB1P08238 724 aaKnown RBP21.16■□□□□ 0.98
SMARCD3-206ENST00000470588 FKBP5Q13451 457 aaPredicted RBP21.16■□□□□ 0.98
SMARCD3-206ENST00000470588 SCN11AQ9UI33 1791 aa21.16■□□□□ 0.98
SMARCD3-206ENST00000470588 NECTIN2Q92692 538 aa21.15■□□□□ 0.98
SMARCD3-206ENST00000470588 BTG4Q9NY30 223 aa21.15■□□□□ 0.98
SMARCD3-206ENST00000470588 ATP10DQ9P241 1426 aa21.14■□□□□ 0.98
SMARCD3-206ENST00000470588 GNAI3P08754 354 aa21.14■□□□□ 0.97
SMARCD3-206ENST00000470588 PHKG2P15735 406 aa21.14■□□□□ 0.97
SMARCD3-206ENST00000470588 DAXXQ9UER7 740 aaPredicted RBP21.14■□□□□ 0.97
SMARCD3-206ENST00000470588 SIPA1L3O60292 1781 aaPredicted RBP21.14■□□□□ 0.97
SMARCD3-206ENST00000470588 HMMRO75330 724 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 IL2RBP14784 551 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 LARP1Q6PKG0 1096 aaKnown RBP21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 PLCH1Q4KWH8 1693 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 KCNQ3O43525 872 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 GNAI2P04899 355 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 BMP2KLQ5H9B9 411 aa21.13■□□□□ 0.97
SMARCD3-206ENST00000470588 PCDH11XQ9BZA7 1347 aa21.12■□□□□ 0.97
SMARCD3-206ENST00000470588 PCDH11YQ9BZA8 1340 aa21.12■□□□□ 0.97
SMARCD3-206ENST00000470588 EIF2S2P20042 333 aaKnown RBP21.11■□□□□ 0.97
SMARCD3-206ENST00000470588 TBC1D32Q96NH3 1257 aa21.11■□□□□ 0.97
SMARCD3-206ENST00000470588 PXDNLA1KZ92 1463 aa21.1■□□□□ 0.97
SMARCD3-206ENST00000470588 ZCRB1Q8TBF4 217 aaKnown RBP21.1■□□□□ 0.97
SMARCD3-206ENST00000470588 DCAF5Q96JK2 942 aa21.1■□□□□ 0.97
SMARCD3-206ENST00000470588 HEG1Q9ULI3 1381 aa21.09■□□□□ 0.97
SMARCD3-206ENST00000470588 CERKQ8TCT0 537 aa21.09■□□□□ 0.97
SMARCD3-206ENST00000470588 PHAXQ9H814 394 aaKnown RBP21.08■□□□□ 0.97
SMARCD3-206ENST00000470588 KDM6AO15550 1401 aaPredicted RBP21.08■□□□□ 0.97
SMARCD3-206ENST00000470588 GIGYF1O75420 1035 aaPredicted RBP21.07■□□□□ 0.96
SMARCD3-206ENST00000470588 ADAMTS2O95450 1211 aa21.07■□□□□ 0.96
SMARCD3-206ENST00000470588 DBF4Q9UBU7 674 aaPredicted RBP21.07■□□□□ 0.96
SMARCD3-206ENST00000470588 MRC1P22897 1456 aa21.07■□□□□ 0.96
SMARCD3-206ENST00000470588 NUTM2BA6NNL0 878 aaPredicted RBP21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 NUTM2EB1AL46 878 aaPredicted RBP21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 CYP27B1O15528 508 aa21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 ATP8B2P98198 1209 aa21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 NUTM2AQ8IVF1 878 aaPredicted RBP21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 SLC52A2Q9HAB3 445 aa21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 CHPF2Q9P2E5 772 aa21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 NWD2Q9ULI1 1742 aa21.06■□□□□ 0.96
SMARCD3-206ENST00000470588 JCADQ9P266 1359 aa21.05■□□□□ 0.96
SMARCD3-206ENST00000470588 PLEKHM2Q8IWE5 1019 aa21.05■□□□□ 0.96
SMARCD3-206ENST00000470588 NRAPQ86VF7 1730 aa21.05■□□□□ 0.96
SMARCD3-206ENST00000470588 USP35Q9P2H5 1018 aa21.05■□□□□ 0.96
SMARCD3-206ENST00000470588 WNK3Q9BYP7 1800 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms