RNA–Protein interactions for RNA: ENST00000470232.1

SYNGAP1-205, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 3

Gene SYNGAP1, Length 394 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-205ENST00000470232 TRAPPC3LQ5T215 181 aa12.5□□□□□ -0.41
SYNGAP1-205ENST00000470232 C9orf131Q5VYM1 1079 aa12.5□□□□□ -0.41
SYNGAP1-205ENST00000470232 PIGBQ92521 554 aa12.5□□□□□ -0.41
SYNGAP1-205ENST00000470232 RGPD2P0DJD1 1756 aa12.5□□□□□ -0.41
SYNGAP1-205ENST00000470232 UBR3Q6ZT12 1888 aa12.5□□□□□ -0.41
SYNGAP1-205ENST00000470232 FBLN1P23142 703 aa12.49□□□□□ -0.41
SYNGAP1-205ENST00000470232 ATP6V1AP38606 617 aa12.49□□□□□ -0.41
SYNGAP1-205ENST00000470232 HTRA3P83110 453 aa12.49□□□□□ -0.41
SYNGAP1-205ENST00000470232 AMIGO3Q86WK7 504 aa12.49□□□□□ -0.41
SYNGAP1-205ENST00000470232 CYP27B1O15528 508 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 NEUROD1Q13562 356 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 RRS1Q15050 365 aaKnown RBP12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 SMIM5Q71RC9 77 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 LINC00116Q8NCU8 138 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 SMC1BQ8NDV3 1235 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 RRAGCQ9HB90 399 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 TMOD3Q9NYL9 352 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 SPG7Q9UQ90 795 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 RTCBQ9Y3I0 505 aaKnown RBP12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 PARP3Q9Y6F1 533 aa12.48□□□□□ -0.41
SYNGAP1-205ENST00000470232 PXDNLA1KZ92 1463 aa12.47□□□□□ -0.41
SYNGAP1-205ENST00000470232 DPEP1P16444 411 aa12.47□□□□□ -0.41
SYNGAP1-205ENST00000470232 NKX1-1Q15270 411 aaPredicted RBP12.47□□□□□ -0.41
SYNGAP1-205ENST00000470232 PIM2Q9P1W9 311 aa12.47□□□□□ -0.41
SYNGAP1-205ENST00000470232 SIN3AQ96ST3 1273 aa12.46□□□□□ -0.41
SYNGAP1-205ENST00000470232 ITGB4P16144 1822 aa12.46□□□□□ -0.42
SYNGAP1-205ENST00000470232 KIF13BQ9NQT8 1826 aa12.46□□□□□ -0.42
SYNGAP1-205ENST00000470232 INSRP06213 1382 aa12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 RFC4P35249 363 aa12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 DALRD3Q5D0E6 543 aaKnown RBP12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 RNF181Q9P0P0 153 aa12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 N4BP2Q86UW6 1770 aaPredicted RBP12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 TOGARAM1Q9Y4F4 1720 aa12.45□□□□□ -0.42
SYNGAP1-205ENST00000470232 HSP90AB2PQ58FF8 381 aa12.44□□□□□ -0.42
SYNGAP1-205ENST00000470232 RC3H1Q5TC82 1133 aaKnown RBP12.44□□□□□ -0.42
SYNGAP1-205ENST00000470232 C10orf71Q711Q0 1435 aa12.44□□□□□ -0.42
SYNGAP1-205ENST00000470232 FLT4P35916 1363 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 KIF24Q5T7B8 1368 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 FYB1O15117 783 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 SLC4A2P04920 1241 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 HSPA1AP0DMV8 641 aaKnown RBP12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 HSPA1BP0DMV9 641 aaKnown RBP12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 ITPK1Q13572 414 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 IFNL2Q8IZJ0 200 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 GGNBP2Q9H3C7 697 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 ASAP1Q9ULH1 1129 aa12.43□□□□□ -0.42
SYNGAP1-205ENST00000470232 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
SYNGAP1-205ENST00000470232 DCAF5Q96JK2 942 aa12.42□□□□□ -0.42
SYNGAP1-205ENST00000470232 ZC3H4Q9UPT8 1303 aaKnown RBP12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 GYS1P13807 737 aa12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 VEGFAP15692 232 aaPredicted RBP12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 KCNA3P22001 575 aa12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 MAP2P11137 1827 aaKnown RBP12.41□□□□□ -0.42
SYNGAP1-205ENST00000470232 ARFGEF1Q9Y6D6 1849 aa12.4□□□□□ -0.42
SYNGAP1-205ENST00000470232 RPS6KA4O75676 772 aa12.4□□□□□ -0.42
SYNGAP1-205ENST00000470232 RBM42Q9BTD8 480 aaKnown RBP12.4□□□□□ -0.42
SYNGAP1-205ENST00000470232 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
SYNGAP1-205ENST00000470232 KIAA1551Q9HCM1 1747 aa12.4□□□□□ -0.43
SYNGAP1-205ENST00000470232 TNRC6CQ9HCJ0 1690 aaKnown RBP12.39□□□□□ -0.43
SYNGAP1-205ENST00000470232 C4AP0C0L4 1744 aa12.38□□□□□ -0.43
SYNGAP1-205ENST00000470232 GLTPD2A6NH11 291 aa12.38□□□□□ -0.43
SYNGAP1-205ENST00000470232 PHKG2P15735 406 aa12.38□□□□□ -0.43
SYNGAP1-205ENST00000470232 BRCA1P38398 1863 aaKnown RBP12.38□□□□□ -0.43
SYNGAP1-205ENST00000470232 CNTNAP4Q9C0A0 1308 aa12.37□□□□□ -0.43
SYNGAP1-205ENST00000470232 PKD1L3Q7Z443 1732 aa12.37□□□□□ -0.43
SYNGAP1-205ENST00000470232 ERVV-2B6SEH9 535 aa12.37□□□□□ -0.43
SYNGAP1-205ENST00000470232 HSP90AB1P08238 724 aaKnown RBP12.37□□□□□ -0.43
SYNGAP1-205ENST00000470232 LMNB1P20700 586 aa12.37□□□□□ -0.43
SYNGAP1-205ENST00000470232 ST20-MTHFSA0A0A6YYL1 179 aa12.36□□□□□ -0.43
SYNGAP1-205ENST00000470232 PPM1GO15355 546 aaPredicted RBP12.36□□□□□ -0.43
SYNGAP1-205ENST00000470232 DPY19L2Q6NUT2 758 aa12.36□□□□□ -0.43
SYNGAP1-205ENST00000470232 TONSLQ96HA7 1378 aa12.35□□□□□ -0.43
SYNGAP1-205ENST00000470232 CCER1Q8TC90 406 aaPredicted RBP12.35□□□□□ -0.43
SYNGAP1-205ENST00000470232 TESK2Q96S53 571 aa12.35□□□□□ -0.43
SYNGAP1-205ENST00000470232 SBF1O95248 1867 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 SLC34A2O95436 690 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 CHRNA5P30532 468 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 CDCA8Q53HL2 280 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 EYA1Q99502 592 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 EMILIN1Q9Y6C2 1016 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 WASHC2AQ641Q2 1341 aa12.34□□□□□ -0.43
SYNGAP1-205ENST00000470232 ZPR1O75312 459 aa12.33□□□□□ -0.44
SYNGAP1-205ENST00000470232 PRDM10Q9NQV6 1147 aa12.33□□□□□ -0.44
SYNGAP1-205ENST00000470232 NCAPD2Q15021 1401 aa12.33□□□□□ -0.44
SYNGAP1-205ENST00000470232 ZNF831Q5JPB2 1677 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 KDRP35968 1356 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 CABP4P57796 275 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 FKBP8Q14318 412 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 AIDAQ96BJ3 306 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 SLC4A9Q96Q91 983 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
SYNGAP1-205ENST00000470232 TM4SF1P30408 202 aa12.31□□□□□ -0.44
SYNGAP1-205ENST00000470232 CRKLP46109 303 aaKnown RBP12.31□□□□□ -0.44
SYNGAP1-205ENST00000470232 PLEKHO1Q53GL0 409 aaPredicted RBP12.31□□□□□ -0.44
SYNGAP1-205ENST00000470232 TTLL6Q8N841 843 aa12.31□□□□□ -0.44
SYNGAP1-205ENST00000470232 USP42Q9H9J4 1324 aaKnown RBP12.31□□□□□ -0.44
SYNGAP1-205ENST00000470232 POLRMTO00411 1230 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms