RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 NUTM2AQ8IVF1 878 aaPredicted RBP24.16■■□□□ 1.46
SMC4-209ENST00000468653 DCAF5Q96JK2 942 aa24.16■■□□□ 1.46
SMC4-209ENST00000468653 API5Q9BZZ5 524 aaKnown RBP24.16■■□□□ 1.46
SMC4-209ENST00000468653 USP35Q9P2H5 1018 aa24.16■■□□□ 1.46
SMC4-209ENST00000468653 VIRMAQ69YN4 1812 aaKnown RBP24.16■■□□□ 1.46
SMC4-209ENST00000468653 EIF4A1P60842 406 aaKnown RBP24.16■■□□□ 1.46
SMC4-209ENST00000468653 TMEM57Q8N5G2 664 aa24.16■■□□□ 1.46
SMC4-209ENST00000468653 ADAMTS7Q9UKP4 1686 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 PCDH11XQ9BZA7 1347 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 PCDH11YQ9BZA8 1340 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 SLC4A2P04920 1241 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 CCDC30Q5VVM6 783 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 STK31Q9BXU1 1019 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 DDX19BQ9UMR2 479 aa24.15■■□□□ 1.46
SMC4-209ENST00000468653 KDM6AO15550 1401 aaPredicted RBP24.15■■□□□ 1.46
SMC4-209ENST00000468653 KCNQ3O43525 872 aa24.14■■□□□ 1.45
SMC4-209ENST00000468653 SLC52A2Q9HAB3 445 aa24.14■■□□□ 1.45
SMC4-209ENST00000468653 KDM3BQ7LBC6 1761 aa24.13■■□□□ 1.45
SMC4-209ENST00000468653 SCN11AQ9UI33 1791 aa24.12■■□□□ 1.45
SMC4-209ENST00000468653 PTPRCP08575 1304 aa24.11■■□□□ 1.45
SMC4-209ENST00000468653 CHMP4AQ9BY43 222 aa24.11■■□□□ 1.45
SMC4-209ENST00000468653 ABCC4O15439 1325 aa24.1■■□□□ 1.45
SMC4-209ENST00000468653 HOXB7P09629 217 aa24.1■■□□□ 1.45
SMC4-209ENST00000468653 CENPQQ7L2Z9 268 aaPredicted RBP24.1■■□□□ 1.45
SMC4-209ENST00000468653 NFATC2IPQ8NCF5 419 aa24.1■■□□□ 1.45
SMC4-209ENST00000468653 NECTIN2Q92692 538 aa24.1■■□□□ 1.45
SMC4-209ENST00000468653 HDGFL1Q5TGJ6 251 aa24.09■■□□□ 1.45
SMC4-209ENST00000468653 SIPA1L3O60292 1781 aaPredicted RBP24.09■■□□□ 1.45
SMC4-209ENST00000468653 DDX54Q8TDD1 881 aaKnown RBP24.08■■□□□ 1.45
SMC4-209ENST00000468653 KDM2BQ8NHM5 1336 aa24.08■■□□□ 1.45
SMC4-209ENST00000468653 CABP4P57796 275 aa24.08■■□□□ 1.44
SMC4-209ENST00000468653 JCADQ9P266 1359 aa24.07■■□□□ 1.44
SMC4-209ENST00000468653 CHMP4BQ9H444 224 aaKnown RBP24.07■■□□□ 1.44
SMC4-209ENST00000468653 PLCH1Q4KWH8 1693 aa24.06■■□□□ 1.44
SMC4-209ENST00000468653 EIF2S2P20042 333 aaKnown RBP24.06■■□□□ 1.44
SMC4-209ENST00000468653 ZNF790Q6PG37 636 aa24.06■■□□□ 1.44
SMC4-209ENST00000468653 MRC1P22897 1456 aa24.05■■□□□ 1.44
SMC4-209ENST00000468653 NKX1-1Q15270 411 aaPredicted RBP24.05■■□□□ 1.44
SMC4-209ENST00000468653 G2E3Q7L622 706 aa24.05■■□□□ 1.44
SMC4-209ENST00000468653 PCDHB15Q9Y5E8 787 aa24.05■■□□□ 1.44
SMC4-209ENST00000468653 SLC39A6Q13433 755 aa24.04■■□□□ 1.44
SMC4-209ENST00000468653 GIGYF1O75420 1035 aaPredicted RBP24.03■■□□□ 1.44
SMC4-209ENST00000468653 ZBTB40Q9NUA8 1239 aa24.03■■□□□ 1.44
SMC4-209ENST00000468653 ERVV-2B6SEH9 535 aa24.03■■□□□ 1.44
SMC4-209ENST00000468653 HEG1Q9ULI3 1381 aa24.03■■□□□ 1.44
SMC4-209ENST00000468653 IGHDP01880 384 aa24.02■■□□□ 1.44
SMC4-209ENST00000468653 FLIIQ13045 1269 aa24.02■■□□□ 1.44
SMC4-209ENST00000468653 TTC5Q8N0Z6 440 aa24.02■■□□□ 1.44
SMC4-209ENST00000468653 DISP2A7MBM2 1401 aa24.02■■□□□ 1.44
SMC4-209ENST00000468653 RGS12O14924 1447 aa24.02■■□□□ 1.44
SMC4-209ENST00000468653 INTS3Q68E01 1043 aaKnown RBP24.01■■□□□ 1.43
SMC4-209ENST00000468653 ZBTB7BO15156 539 aaPredicted RBP24.01■■□□□ 1.43
SMC4-209ENST00000468653 FKBP5Q13451 457 aaPredicted RBP24■■□□□ 1.43
SMC4-209ENST00000468653 RWDD1Q9H446 243 aaPredicted RBP24■■□□□ 1.43
SMC4-209ENST00000468653 CACNA1FO60840 1977 aa24■■□□□ 1.43
SMC4-209ENST00000468653 SHANK3Q9BYB0 1731 aa23.99■■□□□ 1.43
SMC4-209ENST00000468653 SPATA31A1Q5TZJ5 1347 aa23.99■■□□□ 1.43
SMC4-209ENST00000468653 CHPF2Q9P2E5 772 aa23.99■■□□□ 1.43
SMC4-209ENST00000468653 THRAP3Q9Y2W1 955 aaKnown RBP23.99■■□□□ 1.43
SMC4-209ENST00000468653 NRAPQ86VF7 1730 aa23.99■■□□□ 1.43
SMC4-209ENST00000468653 EXOC5O00471 708 aa23.98■■□□□ 1.43
SMC4-209ENST00000468653 CDCA7Q9BWT1 371 aaPredicted RBP23.98■■□□□ 1.43
SMC4-209ENST00000468653 SLIT2O94813 1529 aa23.98■■□□□ 1.43
SMC4-209ENST00000468653 CCDC9Q9Y3X0 531 aaKnown RBP23.98■■□□□ 1.43
SMC4-209ENST00000468653 SLC4A10Q6U841 1118 aa23.97■■□□□ 1.43
SMC4-209ENST00000468653 NGLY1Q96IV0 654 aa23.97■■□□□ 1.43
SMC4-209ENST00000468653 DBF4Q9UBU7 674 aaPredicted RBP23.97■■□□□ 1.43
SMC4-209ENST00000468653 NWD2Q9ULI1 1742 aa23.97■■□□□ 1.43
SMC4-209ENST00000468653 SPATA31A6Q5VVP1 1343 aa23.96■■□□□ 1.43
SMC4-209ENST00000468653 PRAMEF22A3QJZ6 481 aa23.96■■□□□ 1.43
SMC4-209ENST00000468653 F6X3S4 739 aa23.96■■□□□ 1.43
SMC4-209ENST00000468653 ZNF496Q96IT1 587 aaPredicted RBP23.96■■□□□ 1.43
SMC4-209ENST00000468653 C8orf37Q96NL8 207 aa23.96■■□□□ 1.43
SMC4-209ENST00000468653 FMNL2Q96PY5 1086 aa23.96■■□□□ 1.43
SMC4-209ENST00000468653 PHAXQ9H814 394 aaKnown RBP23.96■■□□□ 1.43
SMC4-209ENST00000468653 SPATA31A5Q5VU36 1347 aa23.95■■□□□ 1.42
SMC4-209ENST00000468653 SPATA31A7Q8IWB4 1347 aa23.95■■□□□ 1.42
SMC4-209ENST00000468653 CCT4P50991 539 aaKnown RBP23.95■■□□□ 1.42
SMC4-209ENST00000468653 SNRPA1P09661 255 aaKnown RBP23.94■■□□□ 1.42
SMC4-209ENST00000468653 UNC5CLQ8IV45 518 aa23.94■■□□□ 1.42
SMC4-209ENST00000468653 TSHZ2Q9NRE2 1034 aa23.93■■□□□ 1.42
SMC4-209ENST00000468653 HSPA1LP34931 641 aa23.93■■□□□ 1.42
SMC4-209ENST00000468653 HDAC1Q13547 482 aaPredicted RBP23.93■■□□□ 1.42
SMC4-209ENST00000468653 TMOD3Q9NYL9 352 aa23.92■■□□□ 1.42
SMC4-209ENST00000468653 ANXA1P04083 346 aa23.91■■□□□ 1.42
SMC4-209ENST00000468653 WNK3Q9BYP7 1800 aa23.91■■□□□ 1.42
SMC4-209ENST00000468653 C1orf115Q9H7X2 142 aa23.91■■□□□ 1.42
SMC4-209ENST00000468653 HYPKQ9NX55 129 aa23.91■■□□□ 1.42
SMC4-209ENST00000468653 TNS2Q63HR2 1409 aa23.9■■□□□ 1.42
SMC4-209ENST00000468653 DDB1Q16531 1140 aa23.9■■□□□ 1.42
SMC4-209ENST00000468653 DDX21Q9NR30 783 aaKnown RBP eCLIP23.9■■□□□ 1.421e-26■■■■■ 198.7
SMC4-209ENST00000468653 BARGINQ6ZT62 677 aa23.89■■□□□ 1.42
SMC4-209ENST00000468653 SKAP1Q86WV1 359 aa23.89■■□□□ 1.42
SMC4-209ENST00000468653 PROSER3Q2NL68 480 aa23.88■■□□□ 1.41
SMC4-209ENST00000468653 C5P01031 1676 aa23.87■■□□□ 1.41
SMC4-209ENST00000468653 VPS72Q15906 364 aa23.87■■□□□ 1.41
SMC4-209ENST00000468653 FNBP4Q8N3X1 1017 aaPredicted RBP23.87■■□□□ 1.41
SMC4-209ENST00000468653 USP16Q9Y5T5 823 aa23.87■■□□□ 1.41
SMC4-209ENST00000468653 TOGARAM1Q9Y4F4 1720 aa23.87■■□□□ 1.41
SMC4-209ENST00000468653 MEX3CQ5U5Q3 659 aaKnown RBP23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms