RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 SSH1Q8WYL5 1049 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 SLC52A2Q9HAB3 445 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 USP21Q9UK80 565 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 KCNQ3O43525 872 aa16.78■□□□□ 0.28
COL4A1-202ENST00000467182 NEFLP07196 543 aa16.78■□□□□ 0.28
COL4A1-202ENST00000467182 ZNF428Q96B54 188 aa16.78■□□□□ 0.28
COL4A1-202ENST00000467182 ATRNO75882 1429 aa16.78■□□□□ 0.28
COL4A1-202ENST00000467182 HEG1Q9ULI3 1381 aa16.77■□□□□ 0.28
COL4A1-202ENST00000467182 AFF2P51816 1311 aa16.77■□□□□ 0.28
COL4A1-202ENST00000467182 ELL2O00472 640 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-202ENST00000467182 ALDH1L2Q3SY69 923 aa16.77■□□□□ 0.28
COL4A1-202ENST00000467182 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.28
COL4A1-202ENST00000467182 DDX54Q8TDD1 881 aaKnown RBP16.77■□□□□ 0.28
COL4A1-202ENST00000467182 ITGB4P16144 1822 aa16.76■□□□□ 0.27
COL4A1-202ENST00000467182 BTBD11A6QL63 1104 aa16.76■□□□□ 0.27
COL4A1-202ENST00000467182 BRPF1P55201 1214 aaPredicted RBP16.76■□□□□ 0.27
COL4A1-202ENST00000467182 EIF4A1P60842 406 aaKnown RBP16.76■□□□□ 0.27
COL4A1-202ENST00000467182 BCL2L13Q9BXK5 485 aa16.76■□□□□ 0.27
COL4A1-202ENST00000467182 UBR2Q8IWV8 1755 aa16.76■□□□□ 0.27
COL4A1-202ENST00000467182 ERVV-2B6SEH9 535 aa16.75■□□□□ 0.27
COL4A1-202ENST00000467182 EXOC5O00471 708 aa16.75■□□□□ 0.27
COL4A1-202ENST00000467182 C20orf194Q5TEA3 1177 aa16.75■□□□□ 0.27
COL4A1-202ENST00000467182 MRPL50Q8N5N7 158 aaKnown RBP16.75■□□□□ 0.27
COL4A1-202ENST00000467182 NFATC2IPQ8NCF5 419 aa16.75■□□□□ 0.27
COL4A1-202ENST00000467182 DOT1LQ8TEK3 1739 aa16.74■□□□□ 0.27
COL4A1-202ENST00000467182 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
COL4A1-202ENST00000467182 C5P01031 1676 aa16.74■□□□□ 0.27
COL4A1-202ENST00000467182 SOS1Q07889 1333 aaPredicted RBP16.73■□□□□ 0.27
COL4A1-202ENST00000467182 FBXO41Q8TF61 875 aa16.73■□□□□ 0.27
COL4A1-202ENST00000467182 SMC4Q9NTJ3 1288 aa16.73■□□□□ 0.27
COL4A1-202ENST00000467182 DDB1Q16531 1140 aa16.72■□□□□ 0.27
COL4A1-202ENST00000467182 FAM98CQ17RN3 349 aaKnown RBP16.72■□□□□ 0.27
COL4A1-202ENST00000467182 ERICH6BQ5W0A0 696 aa16.72■□□□□ 0.27
COL4A1-202ENST00000467182 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.72■□□□□ 0.27
COL4A1-202ENST00000467182 TNNQ9UQP3 1299 aa16.72■□□□□ 0.27
COL4A1-202ENST00000467182 KCPQ6ZWJ8 1503 aa16.71■□□□□ 0.27
COL4A1-202ENST00000467182 CABP4P57796 275 aa16.71■□□□□ 0.27
COL4A1-202ENST00000467182 SLC39A6Q13433 755 aa16.71■□□□□ 0.27
COL4A1-202ENST00000467182 ZNF790Q6PG37 636 aa16.71■□□□□ 0.27
COL4A1-202ENST00000467182 MARCH10Q8NA82 808 aaPredicted RBP16.71■□□□□ 0.27
COL4A1-202ENST00000467182 GJD4Q96KN9 370 aaPredicted RBP16.71■□□□□ 0.27
COL4A1-202ENST00000467182 TCERG1O14776 1098 aaKnown RBP16.7■□□□□ 0.26
COL4A1-202ENST00000467182 HOXB7P09629 217 aa16.7■□□□□ 0.26
COL4A1-202ENST00000467182 TRPC5Q9UL62 973 aaPredicted RBP16.7■□□□□ 0.26
COL4A1-202ENST00000467182 PDE3AQ14432 1141 aa16.69■□□□□ 0.26
COL4A1-202ENST00000467182 FRAT1Q92837 279 aaPredicted RBP16.69■□□□□ 0.26
COL4A1-202ENST00000467182 CRBNQ96SW2 442 aa16.69■□□□□ 0.26
COL4A1-202ENST00000467182 NOB1Q9ULX3 412 aaKnown RBP16.69■□□□□ 0.26
COL4A1-202ENST00000467182 LAMB4A4D0S4 1761 aa16.69■□□□□ 0.26
COL4A1-202ENST00000467182 CACNA1FO60840 1977 aa16.68■□□□□ 0.26
COL4A1-202ENST00000467182 ONECUT3O60422 494 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-202ENST00000467182 GIGYF1O75420 1035 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-202ENST00000467182 ZKSCAN2Q63HK3 967 aa16.68■□□□□ 0.26
COL4A1-202ENST00000467182 EXOC6Q8TAG9 804 aa16.68■□□□□ 0.26
COL4A1-202ENST00000467182 BCL9O00512 1426 aa16.68■□□□□ 0.26
COL4A1-202ENST00000467182 KIF16BQ96L93 1317 aa16.68■□□□□ 0.26
COL4A1-202ENST00000467182 RLBP1P12271 317 aa16.67■□□□□ 0.26
COL4A1-202ENST00000467182 RGS12O14924 1447 aa16.67■□□□□ 0.26
COL4A1-202ENST00000467182 PRAMEF22A3QJZ6 481 aa16.66■□□□□ 0.26
COL4A1-202ENST00000467182 TRIM27P14373 513 aa16.66■□□□□ 0.26
COL4A1-202ENST00000467182 PIGBQ92521 554 aa16.66■□□□□ 0.26
COL4A1-202ENST00000467182 ARHGAP45Q92619 1136 aa16.66■□□□□ 0.26
COL4A1-202ENST00000467182 ZNF496Q96IT1 587 aaPredicted RBP16.66■□□□□ 0.26
COL4A1-202ENST00000467182 ATF7IPQ6VMQ6 1270 aa16.65■□□□□ 0.26
COL4A1-202ENST00000467182 PANK1Q8TE04 598 aa16.65■□□□□ 0.26
COL4A1-202ENST00000467182 QTRT2Q9H974 415 aaKnown RBP16.65■□□□□ 0.26
COL4A1-202ENST00000467182 TMOD3Q9NYL9 352 aa16.65■□□□□ 0.26
COL4A1-202ENST00000467182 CANXP27824 592 aaKnown RBP16.64■□□□□ 0.25
COL4A1-202ENST00000467182 HDGFL1Q5TGJ6 251 aa16.64■□□□□ 0.25
COL4A1-202ENST00000467182 CCDC30Q5VVM6 783 aa16.64■□□□□ 0.25
COL4A1-202ENST00000467182 G2E3Q7L622 706 aa16.64■□□□□ 0.25
COL4A1-202ENST00000467182 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
COL4A1-202ENST00000467182 TTC5Q8N0Z6 440 aa16.63■□□□□ 0.25
COL4A1-202ENST00000467182 FMNL2Q96PY5 1086 aa16.63■□□□□ 0.25
COL4A1-202ENST00000467182 ATG3Q9NT62 314 aa16.63■□□□□ 0.25
COL4A1-202ENST00000467182 BRWD3Q6RI45 1802 aa16.62■□□□□ 0.25
COL4A1-202ENST00000467182 IPO8O15397 1037 aaKnown RBP16.62■□□□□ 0.25
COL4A1-202ENST00000467182 DZIP1LQ8IYY4 767 aaKnown RBP16.62■□□□□ 0.25
COL4A1-202ENST00000467182 NECTIN2Q92692 538 aa16.62■□□□□ 0.25
COL4A1-202ENST00000467182 PPP4R2Q9NY27 417 aa16.62■□□□□ 0.25
COL4A1-202ENST00000467182 ABCC4O15439 1325 aa16.62■□□□□ 0.25
COL4A1-202ENST00000467182 EIF2S2P20042 333 aaKnown RBP16.61■□□□□ 0.25
COL4A1-202ENST00000467182 PRIM1P49642 420 aaKnown RBP16.61■□□□□ 0.25
COL4A1-202ENST00000467182 CLUAP1Q96AJ1 413 aa16.61■□□□□ 0.25
COL4A1-202ENST00000467182 ASAP1Q9ULH1 1129 aa16.61■□□□□ 0.25
COL4A1-202ENST00000467182 NHSQ6T4R5 1651 aa16.61■□□□□ 0.25
COL4A1-202ENST00000467182 PTPRCP08575 1304 aa16.61■□□□□ 0.25
COL4A1-202ENST00000467182 N4BP2Q86UW6 1770 aaPredicted RBP16.61■□□□□ 0.25
COL4A1-202ENST00000467182 SBF2Q86WG5 1849 aa16.61■□□□□ 0.25
COL4A1-202ENST00000467182 CICQ96RK0 1608 aaPredicted RBP16.6■□□□□ 0.25
COL4A1-202ENST00000467182 TJP1Q07157 1748 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 SNRPA1P09661 255 aaKnown RBP16.6■□□□□ 0.25
COL4A1-202ENST00000467182 MS4A1P11836 297 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 PDIA6Q15084 440 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 SEPT12Q8IYM1 358 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 STK31Q9BXU1 1019 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 COG6Q9Y2V7 657 aa16.6■□□□□ 0.25
COL4A1-202ENST00000467182 MVPQ14764 893 aaKnown RBP16.59■□□□□ 0.25
COL4A1-202ENST00000467182 ZNF772Q68DY9 489 aaPredicted RBP16.59■□□□□ 0.25
COL4A1-202ENST00000467182 TMEM57Q8N5G2 664 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms