RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CCDC83Q8IWF9 413 aa22.3■■□□□ 1.16
CCDC88B-204ENST00000463837 WASF1Q92558 559 aa22.3■■□□□ 1.16
CCDC88B-204ENST00000463837 CAVIN2O95810 425 aa22.3■■□□□ 1.16
CCDC88B-204ENST00000463837 NOL7Q9UMY1 257 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-204ENST00000463837 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 KIAA0754O94854 1291 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 USP8P40818 1118 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 NUCB1Q02818 461 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 FERMT3Q86UX7 667 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 STK11IPQ8N1F8 1099 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 ARHGAP45Q92619 1136 aa22.29■■□□□ 1.16
CCDC88B-204ENST00000463837 CCDC69A6NI79 296 aa22.28■■□□□ 1.16
CCDC88B-204ENST00000463837 GOLGA6L10A6NI86 522 aa22.28■■□□□ 1.16
CCDC88B-204ENST00000463837 ZNF530Q6P9A1 599 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-204ENST00000463837 NUTM1Q86Y26 1132 aa22.28■■□□□ 1.16
CCDC88B-204ENST00000463837 NUP160Q12769 1436 aa22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 GNAT3A8MTJ3 354 aa22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 XRCC6P12956 609 aaKnown RBP eCLIP22.27■■□□□ 1.166e-6■■■■■ 27.6
CCDC88B-204ENST00000463837 LRSAM1Q6UWE0 723 aa22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 RBM42Q9BTD8 480 aaKnown RBP22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 SMARCA5O60264 1052 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 ERLIN2O94905 339 aa22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 USP25Q9UHP3 1055 aa22.27■■□□□ 1.16
CCDC88B-204ENST00000463837 ZSCAN23Q3MJ62 389 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 TTC22Q5TAA0 569 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 CDK5RAP3Q96JB5 506 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 STRN4Q9NRL3 753 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 ASXL1Q8IXJ9 1541 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 HMGB1P09429 215 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 GSDMDP57764 484 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 RRS1Q15050 365 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 CLIP2Q9UDT6 1046 aa22.26■■□□□ 1.15
CCDC88B-204ENST00000463837 PRPF40BQ6NWY9 871 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 CCDC181Q5TID7 509 aa22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 HMGB2P26583 209 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 MAPK8IP2Q13387 824 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 SF3B2Q13435 895 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 CCDC61Q9Y6R9 512 aa22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 HS1BP3Q53T59 392 aa22.25■■□□□ 1.15
CCDC88B-204ENST00000463837 UBE2HP62256 183 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 HSP90AB2PQ58FF8 381 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 THUMPD2Q9BTF0 503 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 CEP131Q9UPN4 1083 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 TNNT1P13805 278 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 CFAP100Q494V2 611 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 UGGT2Q9NYU1 1516 aa22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 U3KPZ7 1027 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-204ENST00000463837 ADCY5O95622 1261 aa22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 DDX11Q96FC9 970 aa22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 GNL3LQ9NVN8 582 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 EPB41L2O43491 1005 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 CCAR1Q8IX12 1150 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 CALCOCO1Q9P1Z2 691 aa22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 CNNM1Q9NRU3 951 aa22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 SPG7Q9UQ90 795 aa22.23■■□□□ 1.15
CCDC88B-204ENST00000463837 IMMTQ16891 758 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 TOM1L2Q6ZVM7 507 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 DEF6Q9H4E7 631 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 ANKRD36BQ8N2N9 1353 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 BTBD11A6QL63 1104 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 STX6O43752 255 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 ARHGAP29Q52LW3 1261 aa22.22■■□□□ 1.15
CCDC88B-204ENST00000463837 CCDC102AQ96A19 550 aa22.21■■□□□ 1.15
CCDC88B-204ENST00000463837 PAXBP1Q9Y5B6 917 aa22.21■■□□□ 1.15
CCDC88B-204ENST00000463837 CCDC148Q8NFR7 591 aa22.21■■□□□ 1.15
CCDC88B-204ENST00000463837 MCM3P25205 808 aa22.21■■□□□ 1.15
CCDC88B-204ENST00000463837 NUDT16Q96DE0 195 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-204ENST00000463837 FAM193AP78312 1265 aa22.2■■□□□ 1.14
CCDC88B-204ENST00000463837 ODF2Q5BJF6 829 aa22.2■■□□□ 1.14
CCDC88B-204ENST00000463837 CABP4P57796 275 aa22.2■■□□□ 1.14
CCDC88B-204ENST00000463837 CCDC57Q2TAC2 916 aa22.2■■□□□ 1.14
CCDC88B-204ENST00000463837 CEP126Q9P2H0 1117 aa22.2■■□□□ 1.14
CCDC88B-204ENST00000463837 HSP90AB3PQ58FF7 597 aa22.19■■□□□ 1.14
CCDC88B-204ENST00000463837 ZFYVE27Q5T4F4 411 aa22.19■■□□□ 1.14
CCDC88B-204ENST00000463837 RAPGEF3O95398 923 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 PTPRKQ15262 1439 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 ANAPC15P60006 121 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 STX1AQ16623 288 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 SMC5Q8IY18 1101 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 GDPD2Q9HCC8 539 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 PCDHB15Q9Y5E8 787 aa22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 SAMD1Q6SPF0 538 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-204ENST00000463837 MAP9Q49MG5 647 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 MCM10Q7L590 875 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 PRDM11Q9NQV5 511 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 FAM177BA6PVY3 158 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 POTEB2H3BUK9 544 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 CASQ1P31415 396 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 GOLGA6L7A0A1B0GV03 622 aa22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 RBM27Q9P2N5 1060 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-204ENST00000463837 GOLGA6L9A6NEM1 432 aa22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 TAF7Q15545 349 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 EVI5LQ96CN4 794 aa22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 PLB1Q6P1J6 1458 aa22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 KIF5CO60282 957 aa22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 DDX54Q8TDD1 881 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 C16orf45Q96MC5 204 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 TOP1P11387 765 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-204ENST00000463837 POLR3AO14802 1390 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-204ENST00000463837 FKBP4Q02790 459 aaKnown RBP eCLIP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms