RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 ENAMQ9NRM1 1142 aa8.28□□□□□ -1.08
VPS41-209ENST00000457055 SUPT5HO00267 1087 aaKnown RBP8.27□□□□□ -1.09
VPS41-209ENST00000457055 F11P03951 625 aa8.27□□□□□ -1.09
VPS41-209ENST00000457055 KANK3Q6NY19 840 aa8.27□□□□□ -1.09
VPS41-209ENST00000457055 PRM3Q9NNZ6 103 aa8.27□□□□□ -1.09
VPS41-209ENST00000457055 PDIA4P13667 645 aaKnown RBP8.26□□□□□ -1.09
VPS41-209ENST00000457055 EIF4G2P78344 907 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS41-209ENST00000457055 CENPCQ03188 943 aa8.26□□□□□ -1.09
VPS41-209ENST00000457055 ZSCAN10Q96SZ4 725 aaPredicted RBP8.26□□□□□ -1.09
VPS41-209ENST00000457055 DNMT3AQ9Y6K1 912 aaPredicted RBP8.26□□□□□ -1.09
VPS41-209ENST00000457055 MX2P20592 715 aa8.25□□□□□ -1.09
VPS41-209ENST00000457055 PHKA2P46019 1235 aa8.25□□□□□ -1.09
VPS41-209ENST00000457055 GPAMQ9HCL2 828 aa8.25□□□□□ -1.09
VPS41-209ENST00000457055 DOLKQ9UPQ8 538 aa8.25□□□□□ -1.09
VPS41-209ENST00000457055 CDK11AQ9UQ88 783 aaPredicted RBP8.25□□□□□ -1.09
VPS41-209ENST00000457055 GTF2E1P29083 439 aaPredicted RBP8.24□□□□□ -1.09
VPS41-209ENST00000457055 SLFNL1Q499Z3 407 aa8.24□□□□□ -1.09
VPS41-209ENST00000457055 ESCO1Q5FWF5 840 aa8.24□□□□□ -1.09
VPS41-209ENST00000457055 GNASQ5JWF2 1037 aa8.24□□□□□ -1.09
VPS41-209ENST00000457055 ACDQ96AP0 544 aa8.24□□□□□ -1.09
VPS41-209ENST00000457055 NSFL1CQ9UNZ2 370 aaKnown RBP8.24□□□□□ -1.09
VPS41-209ENST00000457055 HRH3Q9Y5N1 445 aa8.24□□□□□ -1.09
VPS41-209ENST00000457055 A0A1B0GTH6 734 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 LOC105371045A0A1W2PR82 267 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 BCRP11274 1271 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 IRF5Q13568 498 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 GPAT2Q6NUI2 795 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 TMEM214Q6NUQ4 689 aaKnown RBP8.23□□□□□ -1.09
VPS41-209ENST00000457055 RNF135Q8IUD6 432 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 NEDD1Q8NHV4 660 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 XAGE2Q96GT9 111 aa8.23□□□□□ -1.09
VPS41-209ENST00000457055 FHDC1Q9C0D6 1143 aaPredicted RBP8.23□□□□□ -1.09
VPS41-209ENST00000457055 HMGB1P09429 215 aaKnown RBP8.22□□□□□ -1.09
VPS41-209ENST00000457055 CDK11BP21127 795 aaKnown RBP8.22□□□□□ -1.09
VPS41-209ENST00000457055 USP4Q13107 963 aa8.22□□□□□ -1.09
VPS41-209ENST00000457055 TSGA10IPQ3SY00 556 aa8.22□□□□□ -1.09
VPS41-209ENST00000457055 OXLD1Q5BKU9 147 aa8.22□□□□□ -1.09
VPS41-209ENST00000457055 THBS1P07996 1170 aa8.21□□□□□ -1.1
VPS41-209ENST00000457055 VAC14Q08AM6 782 aa8.21□□□□□ -1.1
VPS41-209ENST00000457055 SUZ12Q15022 739 aaKnown RBP8.21□□□□□ -1.1
VPS41-209ENST00000457055 C4orf17Q53FE4 359 aa8.21□□□□□ -1.1
VPS41-209ENST00000457055 PODNQ7Z5L7 613 aa8.21□□□□□ -1.1
VPS41-209ENST00000457055 PHTF2Q8N3S3 785 aa8.21□□□□□ -1.1
VPS41-209ENST00000457055 CECR2Q9BXF3 1484 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 PHF20L1A8MW92 1017 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 STAU1O95793 577 aaKnown RBP8.2□□□□□ -1.1
VPS41-209ENST00000457055 MAP2K3P46734 347 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 CFHR5Q9BXR6 569 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 ETNK1Q9HBU6 452 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 PHF24Q9UPV7 400 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 CNTNAP5Q8WYK1 1306 aa8.2□□□□□ -1.1
VPS41-209ENST00000457055 CSB-PGBD3P0DP91 1061 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 FOXK2Q01167 660 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 TLR1Q15399 786 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 PGBD3Q8N328 593 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 BEND7Q8N7W2 519 aaPredicted RBP8.19□□□□□ -1.1
VPS41-209ENST00000457055 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 RUBCNLQ9H714 662 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 GDPD2Q9HCC8 539 aa8.19□□□□□ -1.1
VPS41-209ENST00000457055 IGHA1P01876 353 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 UBTFP17480 764 aaKnown RBP8.18□□□□□ -1.1
VPS41-209ENST00000457055 MSX1P28360 303 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 ABL2P42684 1182 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 LBRQ14739 615 aaKnown RBP8.18□□□□□ -1.1
VPS41-209ENST00000457055 RHBDD1Q8TEB9 315 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 UBE2Q2Q8WVN8 375 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 OXCT2Q9BYC2 517 aaPredicted RBP8.18□□□□□ -1.1
VPS41-209ENST00000457055 LRRC4BQ9NT99 713 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 CC2D2AQ9P2K1 1620 aa8.18□□□□□ -1.1
VPS41-209ENST00000457055 LOC100996750A0A140TA64 210 aa8.17□□□□□ -1.1
VPS41-209ENST00000457055 OIP5O43482 229 aa8.17□□□□□ -1.1
VPS41-209ENST00000457055 EFHC2Q5JST6 749 aa8.17□□□□□ -1.1
VPS41-209ENST00000457055 KRTAP4-6Q9BYQ5 205 aa8.17□□□□□ -1.1
VPS41-209ENST00000457055 UBAP2LQ14157 1087 aaKnown RBP8.16□□□□□ -1.1
VPS41-209ENST00000457055 PPARGC1BQ86YN6 1023 aaKnown RBP8.16□□□□□ -1.1
VPS41-209ENST00000457055 BICRAQ9NZM4 1560 aa8.16□□□□□ -1.1
VPS41-209ENST00000457055 CHIC2Q9UKJ5 165 aa8.16□□□□□ -1.1
VPS41-209ENST00000457055 SHROOM4Q9ULL8 1493 aa8.16□□□□□ -1.1
VPS41-209ENST00000457055 PLA2G4AP47712 749 aa8.15□□□□□ -1.1
VPS41-209ENST00000457055 GDF10P55107 478 aa8.15□□□□□ -1.1
VPS41-209ENST00000457055 WASHC4Q2M389 1173 aa8.15□□□□□ -1.1
VPS41-209ENST00000457055 INHAP05111 366 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 SCNN1DP51172 638 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 SEMA3FQ13275 785 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 MAP7D1Q3KQU3 841 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 TBC1D9Q6ZT07 1266 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 PLPP7Q8NBV4 271 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 KLRG1Q96E93 195 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 DCAF5Q96JK2 942 aa8.14□□□□□ -1.11
VPS41-209ENST00000457055 ATXN7L1Q9ULK2 861 aaPredicted RBP8.14□□□□□ -1.11
VPS41-209ENST00000457055 BMP4P12644 408 aa8.13□□□□□ -1.11
VPS41-209ENST00000457055 ABHD17AQ96GS6 310 aa8.13□□□□□ -1.11
VPS41-209ENST00000457055 CHMP4AQ9BY43 222 aa8.13□□□□□ -1.11
VPS41-209ENST00000457055 GDF2Q9UK05 429 aaPredicted RBP8.13□□□□□ -1.11
VPS41-209ENST00000457055 SHISA8B8ZZ34 492 aa8.12□□□□□ -1.11
VPS41-209ENST00000457055 MCM6Q14566 821 aa8.12□□□□□ -1.11
VPS41-209ENST00000457055 PLA2G4EQ3MJ16 856 aa8.12□□□□□ -1.11
VPS41-209ENST00000457055 GALNT6Q8NCL4 622 aa8.12□□□□□ -1.11
VPS41-209ENST00000457055 CRISPLD1Q9H336 500 aa8.12□□□□□ -1.11
VPS41-209ENST00000457055 NEFLP07196 543 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms