RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ATG3Q9NT62 314 aa16.3■□□□□ 0.2
USP40-210ENST00000454354 C1orf141Q5JVX7 400 aa16.29■□□□□ 0.2
USP40-210ENST00000454354 COL23A1Q86Y22 540 aaPredicted RBP16.29■□□□□ 0.2
USP40-210ENST00000454354 FLAD1Q8NFF5 587 aa16.29■□□□□ 0.2
USP40-210ENST00000454354 FHDC1Q9C0D6 1143 aaPredicted RBP16.29■□□□□ 0.2
USP40-210ENST00000454354 CHD4Q14839 1912 aa16.29■□□□□ 0.2
USP40-210ENST00000454354 SIPA1L3O60292 1781 aaPredicted RBP16.28■□□□□ 0.2
USP40-210ENST00000454354 UTRNP46939 3433 aa16.28■□□□□ 0.2
USP40-210ENST00000454354 UBR2Q8IWV8 1755 aa16.28■□□□□ 0.2
USP40-210ENST00000454354 POLD1P28340 1107 aa16.27■□□□□ 0.2
USP40-210ENST00000454354 AKAP4Q5JQC9 854 aa16.27■□□□□ 0.2
USP40-210ENST00000454354 LINC00116Q8NCU8 138 aa16.27■□□□□ 0.2
USP40-210ENST00000454354 SYT17Q9BSW7 474 aa16.27■□□□□ 0.2
USP40-210ENST00000454354 C4AP0C0L4 1744 aa16.27■□□□□ 0.19
USP40-210ENST00000454354 HMOX1P09601 288 aa16.26■□□□□ 0.19
USP40-210ENST00000454354 ITPK1Q13572 414 aa16.26■□□□□ 0.19
USP40-210ENST00000454354 AK7Q96M32 723 aa16.26■□□□□ 0.19
USP40-210ENST00000454354 ATP6V1AP38606 617 aa16.25■□□□□ 0.19
USP40-210ENST00000454354 CABP4P57796 275 aa16.25■□□□□ 0.19
USP40-210ENST00000454354 AMIGO3Q86WK7 504 aa16.25■□□□□ 0.19
USP40-210ENST00000454354 SSFA2P28290 1259 aa16.24■□□□□ 0.19
USP40-210ENST00000454354 SLC4A9Q96Q91 983 aa16.24■□□□□ 0.19
USP40-210ENST00000454354 MSH5O43196 834 aa16.23■□□□□ 0.19
USP40-210ENST00000454354 CNGB1Q14028 1251 aaPredicted RBP16.23■□□□□ 0.19
USP40-210ENST00000454354 GOLGB1Q14789 3259 aaKnown RBP16.23■□□□□ 0.19
USP40-210ENST00000454354 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
USP40-210ENST00000454354 MTHFSDQ2M296 383 aaKnown RBP16.22■□□□□ 0.19
USP40-210ENST00000454354 NFATC2IPQ8NCF5 419 aa16.22■□□□□ 0.19
USP40-210ENST00000454354 KIF13BQ9NQT8 1826 aa16.22■□□□□ 0.19
USP40-210ENST00000454354 KCPQ6ZWJ8 1503 aa16.21■□□□□ 0.19
USP40-210ENST00000454354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.21■□□□□ 0.19
USP40-210ENST00000454354 PPP2R1AP30153 589 aa16.21■□□□□ 0.19
USP40-210ENST00000454354 CFAP53Q96M91 514 aa16.21■□□□□ 0.19
USP40-210ENST00000454354 SLC52A2Q9HAB3 445 aa16.21■□□□□ 0.19
USP40-210ENST00000454354 CNTNAP4Q9C0A0 1308 aa16.2■□□□□ 0.18
USP40-210ENST00000454354 U2SURPO15042 1029 aaKnown RBP16.2■□□□□ 0.18
USP40-210ENST00000454354 GNPATO15228 680 aa16.2■□□□□ 0.18
USP40-210ENST00000454354 RNMTO43148 476 aaKnown RBP16.2■□□□□ 0.18
USP40-210ENST00000454354 RC3H1Q5TC82 1133 aaKnown RBP16.2■□□□□ 0.18
USP40-210ENST00000454354 MSL1Q68DK7 614 aa16.2■□□□□ 0.18
USP40-210ENST00000454354 RBM42Q9BTD8 480 aaKnown RBP16.2■□□□□ 0.18
USP40-210ENST00000454354 PHF14O94880 888 aa16.19■□□□□ 0.18
USP40-210ENST00000454354 LGR6Q9HBX8 967 aa16.19■□□□□ 0.18
USP40-210ENST00000454354 DLG5Q8TDM6 1919 aa16.19■□□□□ 0.18
USP40-210ENST00000454354 SMIM5Q71RC9 77 aa16.18■□□□□ 0.18
USP40-210ENST00000454354 ADRA2BP18089 450 aa16.17■□□□□ 0.18
USP40-210ENST00000454354 GAS2L2Q8NHY3 880 aa16.17■□□□□ 0.18
USP40-210ENST00000454354 RSPH6AQ9H0K4 717 aa16.17■□□□□ 0.18
USP40-210ENST00000454354 KIAA1551Q9HCM1 1747 aa16.16■□□□□ 0.18
USP40-210ENST00000454354 PTCD1O75127 700 aaKnown RBP16.16■□□□□ 0.18
USP40-210ENST00000454354 RTCBQ9Y3I0 505 aaKnown RBP16.16■□□□□ 0.18
USP40-210ENST00000454354 KLHL34Q8N239 644 aa16.15■□□□□ 0.18
USP40-210ENST00000454354 NLGN2Q8NFZ4 835 aa16.15■□□□□ 0.18
USP40-210ENST00000454354 NUDCQ9Y266 331 aa16.15■□□□□ 0.18
USP40-210ENST00000454354 CEMIPQ8WUJ3 1361 aa16.14■□□□□ 0.17
USP40-210ENST00000454354 GNAT3A8MTJ3 354 aa16.14■□□□□ 0.17
USP40-210ENST00000454354 RPS6KA4O75676 772 aa16.14■□□□□ 0.17
USP40-210ENST00000454354 PRKAR2BP31323 418 aa16.14■□□□□ 0.17
USP40-210ENST00000454354 CD2APQ9Y5K6 639 aa16.14■□□□□ 0.17
USP40-210ENST00000454354 YY1P25490 414 aa16.13■□□□□ 0.17
USP40-210ENST00000454354 CRKLP46109 303 aaKnown RBP16.13■□□□□ 0.17
USP40-210ENST00000454354 TRAPPC3LQ5T215 181 aa16.13■□□□□ 0.17
USP40-210ENST00000454354 PHACTR3Q96KR7 559 aa16.13■□□□□ 0.17
USP40-210ENST00000454354 BRCA1P38398 1863 aaKnown RBP16.13■□□□□ 0.17
USP40-210ENST00000454354 SLC39A6Q13433 755 aa16.12■□□□□ 0.17
USP40-210ENST00000454354 ARHGEF1Q92888 912 aaKnown RBP16.12■□□□□ 0.17
USP40-210ENST00000454354 N4BP2Q86UW6 1770 aaPredicted RBP16.11■□□□□ 0.17
USP40-210ENST00000454354 FCHSD2O94868 740 aa16.11■□□□□ 0.17
USP40-210ENST00000454354 U2AF1L5P0DN76 240 aaPredicted RBP16.11■□□□□ 0.17
USP40-210ENST00000454354 U2AF1Q01081 240 aaKnown RBP eCLIP16.11■□□□□ 0.17
USP40-210ENST00000454354 VSIG10Q8N0Z9 540 aa16.11■□□□□ 0.17
USP40-210ENST00000454354 IL17REQ8NFR9 667 aa16.11■□□□□ 0.17
USP40-210ENST00000454354 DNAJC10Q8IXB1 793 aa16.1■□□□□ 0.17
USP40-210ENST00000454354 GYS1P13807 737 aa16.09■□□□□ 0.17
USP40-210ENST00000454354 TEFQ10587 303 aa16.09■□□□□ 0.17
USP40-210ENST00000454354 GPR162Q16538 588 aa16.09■□□□□ 0.17
USP40-210ENST00000454354 INTS5Q6P9B9 1019 aaKnown RBP16.09■□□□□ 0.17
USP40-210ENST00000454354 NLGN1Q8N2Q7 840 aa16.09■□□□□ 0.17
USP40-210ENST00000454354 AFDNP55196 1824 aaKnown RBP16.09■□□□□ 0.17
USP40-210ENST00000454354 C10orf71Q711Q0 1435 aa16.09■□□□□ 0.17
USP40-210ENST00000454354 SCN7AQ01118 1682 aa16.08■□□□□ 0.17
USP40-210ENST00000454354 KDM3BQ7LBC6 1761 aa16.08■□□□□ 0.17
USP40-210ENST00000454354 MMP10P09238 476 aa16.08■□□□□ 0.16
USP40-210ENST00000454354 CYP19A1P11511 503 aaPredicted RBP16.08■□□□□ 0.16
USP40-210ENST00000454354 RFC4P35249 363 aa16.08■□□□□ 0.16
USP40-210ENST00000454354 CCDC87Q9NVE4 849 aa16.08■□□□□ 0.16
USP40-210ENST00000454354 SOS1Q07889 1333 aaPredicted RBP16.08■□□□□ 0.16
USP40-210ENST00000454354 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
USP40-210ENST00000454354 NRXN2Q9P2S2 1712 aa16.08■□□□□ 0.16
USP40-210ENST00000454354 ZNF790Q6PG37 636 aa16.07■□□□□ 0.16
USP40-210ENST00000454354 TTC5Q8N0Z6 440 aa16.07■□□□□ 0.16
USP40-210ENST00000454354 LAMB4A4D0S4 1761 aa16.07■□□□□ 0.16
USP40-210ENST00000454354 ARFGEF1Q9Y6D6 1849 aa16.06■□□□□ 0.16
USP40-210ENST00000454354 BCORQ6W2J9 1755 aa16.06■□□□□ 0.16
USP40-210ENST00000454354 COL15A1P39059 1388 aa16.06■□□□□ 0.16
USP40-210ENST00000454354 HEG1Q9ULI3 1381 aa16.06■□□□□ 0.16
USP40-210ENST00000454354 RALBP1Q15311 655 aa16.06■□□□□ 0.16
USP40-210ENST00000454354 PXDNLA1KZ92 1463 aa16.05■□□□□ 0.16
USP40-210ENST00000454354 YBX3P16989 372 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP40-210ENST00000454354 ZNF496Q96IT1 587 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms