RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 POTEAQ6S8J7 498 aa11.67□□□□□ -0.54
SYNE1-214ENST00000454018 USHBP1Q8N6Y0 703 aa11.67□□□□□ -0.54
SYNE1-214ENST00000454018 RAPGEF4Q8WZA2 1011 aa11.67□□□□□ -0.54
SYNE1-214ENST00000454018 DOT1LQ8TEK3 1739 aa11.67□□□□□ -0.54
SYNE1-214ENST00000454018 U2AF1L5P0DN76 240 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-214ENST00000454018 U2AF1Q01081 240 aaKnown RBP eCLIP11.66□□□□□ -0.54
SYNE1-214ENST00000454018 WDR43Q15061 677 aaKnown RBP eCLIP11.66□□□□□ -0.54
SYNE1-214ENST00000454018 FAM98CQ17RN3 349 aaKnown RBP11.66□□□□□ -0.54
SYNE1-214ENST00000454018 SULT6B1Q6IMI4 303 aa11.66□□□□□ -0.54
SYNE1-214ENST00000454018 ITGB4P16144 1822 aa11.66□□□□□ -0.54
SYNE1-214ENST00000454018 AEBP1Q8IUX7 1158 aa11.65□□□□□ -0.54
SYNE1-214ENST00000454018 AKT1S1Q96B36 256 aa11.65□□□□□ -0.54
SYNE1-214ENST00000454018 ONECUT3O60422 494 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-214ENST00000454018 HMOX1P09601 288 aa11.65□□□□□ -0.55
SYNE1-214ENST00000454018 TATP17735 454 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-214ENST00000454018 E2F4Q16254 413 aa11.65□□□□□ -0.55
SYNE1-214ENST00000454018 CCDC184Q52MB2 194 aa11.65□□□□□ -0.55
SYNE1-214ENST00000454018 ZNF467Q7Z7K2 595 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-214ENST00000454018 ADAMTS7Q9UKP4 1686 aa11.65□□□□□ -0.55
SYNE1-214ENST00000454018 TOGARAM1Q9Y4F4 1720 aa11.64□□□□□ -0.55
SYNE1-214ENST00000454018 A0A0G2JS52 829 aa11.64□□□□□ -0.55
SYNE1-214ENST00000454018 FCHSD2O94868 740 aa11.64□□□□□ -0.55
SYNE1-214ENST00000454018 MYT1Q01538 1121 aa11.64□□□□□ -0.55
SYNE1-214ENST00000454018 PDAP1Q13442 181 aaKnown RBP11.64□□□□□ -0.55
SYNE1-214ENST00000454018 RSPH6AQ9H0K4 717 aa11.64□□□□□ -0.55
SYNE1-214ENST00000454018 PNNQ9H307 717 aaKnown RBP11.64□□□□□ -0.55
SYNE1-214ENST00000454018 NHSQ6T4R5 1651 aa11.63□□□□□ -0.55
SYNE1-214ENST00000454018 PPP1R37O75864 691 aa11.63□□□□□ -0.55
SYNE1-214ENST00000454018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.63□□□□□ -0.55
SYNE1-214ENST00000454018 SIPA1L3O60292 1781 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-214ENST00000454018 PCDH11XQ9BZA7 1347 aa11.63□□□□□ -0.55
SYNE1-214ENST00000454018 PCDH11YQ9BZA8 1340 aa11.63□□□□□ -0.55
SYNE1-214ENST00000454018 NEFMP07197 916 aa11.62□□□□□ -0.55
SYNE1-214ENST00000454018 PRKAR2BP31323 418 aa11.62□□□□□ -0.55
SYNE1-214ENST00000454018 DDB1Q16531 1140 aa11.62□□□□□ -0.55
SYNE1-214ENST00000454018 PNISRQ8TF01 805 aaKnown RBP11.62□□□□□ -0.55
SYNE1-214ENST00000454018 AMOTQ4VCS5 1084 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 SEPT12Q8IYM1 358 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 PCDHB8Q9UN66 801 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 SPG7Q9UQ90 795 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 PCDHB13Q9Y5F0 798 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 MAPK8IP3Q9UPT6 1336 aa11.61□□□□□ -0.55
SYNE1-214ENST00000454018 ZMYND10O75800 440 aa11.6□□□□□ -0.55
SYNE1-214ENST00000454018 ADAMTS8Q9UP79 889 aa11.6□□□□□ -0.55
SYNE1-214ENST00000454018 BTAF1O14981 1849 aa11.6□□□□□ -0.55
SYNE1-214ENST00000454018 TNS1Q9HBL0 1735 aaKnown RBP11.6□□□□□ -0.55
SYNE1-214ENST00000454018 EXOC5O00471 708 aa11.6□□□□□ -0.55
SYNE1-214ENST00000454018 PLEKHO1Q53GL0 409 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-214ENST00000454018 REM2Q8IYK8 340 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-214ENST00000454018 ZCRB1Q8TBF4 217 aaKnown RBP11.6□□□□□ -0.55
SYNE1-214ENST00000454018 BCL9O00512 1426 aa11.59□□□□□ -0.55
SYNE1-214ENST00000454018 EP400Q96L91 3159 aa11.59□□□□□ -0.55
SYNE1-214ENST00000454018 GAS2L2Q8NHY3 880 aa11.59□□□□□ -0.55
SYNE1-214ENST00000454018 PLEKHF1Q96S99 279 aa11.59□□□□□ -0.55
SYNE1-214ENST00000454018 RGPD3A6NKT7 1758 aaPredicted RBP11.58□□□□□ -0.55
SYNE1-214ENST00000454018 RGPD4Q7Z3J3 1758 aa11.58□□□□□ -0.55
SYNE1-214ENST00000454018 PDE3BQ13370 1112 aa11.58□□□□□ -0.56
SYNE1-214ENST00000454018 KRT27Q7Z3Y8 459 aa11.58□□□□□ -0.56
SYNE1-214ENST00000454018 RUNDC1Q96C34 613 aa11.58□□□□□ -0.56
SYNE1-214ENST00000454018 TSPYL2Q9H2G4 693 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-214ENST00000454018 MRC1P22897 1456 aa11.58□□□□□ -0.56
SYNE1-214ENST00000454018 MAP3K5Q99683 1374 aa11.57□□□□□ -0.56
SYNE1-214ENST00000454018 PAPPAQ13219 1627 aa11.57□□□□□ -0.56
SYNE1-214ENST00000454018 C1orf141Q5JVX7 400 aa11.57□□□□□ -0.56
SYNE1-214ENST00000454018 ZNF530Q6P9A1 599 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-214ENST00000454018 FAM9BQ8IZU0 186 aa11.57□□□□□ -0.56
SYNE1-214ENST00000454018 CYP27B1O15528 508 aa11.56□□□□□ -0.56
SYNE1-214ENST00000454018 MTHFSDQ2M296 383 aaKnown RBP11.56□□□□□ -0.56
SYNE1-214ENST00000454018 IFNL2Q8IZJ0 200 aa11.56□□□□□ -0.56
SYNE1-214ENST00000454018 PHACTR3Q96KR7 559 aa11.56□□□□□ -0.56
SYNE1-214ENST00000454018 KDM6AO15550 1401 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-214ENST00000454018 KDM3BQ7LBC6 1761 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 UBR2Q8IWV8 1755 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 HSP90AB1P08238 724 aaKnown RBP11.55□□□□□ -0.56
SYNE1-214ENST00000454018 PHKG2P15735 406 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 PSEN1P49768 467 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 AKAP4Q5JQC9 854 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 CCDC146Q8IYE0 955 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 MARCH10Q8NA82 808 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-214ENST00000454018 NFE2L2Q16236 605 aa11.55□□□□□ -0.56
SYNE1-214ENST00000454018 DDX54Q8TDD1 881 aaKnown RBP11.55□□□□□ -0.56
SYNE1-214ENST00000454018 LY75O60449 1722 aa11.54□□□□□ -0.56
SYNE1-214ENST00000454018 GNAT3A8MTJ3 354 aa11.53□□□□□ -0.56
SYNE1-214ENST00000454018 LMOD3Q0VAK6 560 aa11.53□□□□□ -0.56
SYNE1-214ENST00000454018 FAM196AQ6ZSG2 479 aa11.53□□□□□ -0.56
SYNE1-214ENST00000454018 FBXO22Q8NEZ5 403 aa11.53□□□□□ -0.56
SYNE1-214ENST00000454018 DCAF5Q96JK2 942 aa11.53□□□□□ -0.56
SYNE1-214ENST00000454018 RBM42Q9BTD8 480 aaKnown RBP11.53□□□□□ -0.56
SYNE1-214ENST00000454018 HTATSF1O43719 755 aaKnown RBP11.52□□□□□ -0.57
SYNE1-214ENST00000454018 TMPOP42166 694 aaKnown RBP11.52□□□□□ -0.57
SYNE1-214ENST00000454018 CEMIPQ8WUJ3 1361 aa11.52□□□□□ -0.57
SYNE1-214ENST00000454018 CICQ96RK0 1608 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-214ENST00000454018 ZNF831Q5JPB2 1677 aa11.52□□□□□ -0.57
SYNE1-214ENST00000454018 APAF1O14727 1248 aa11.51□□□□□ -0.57
SYNE1-214ENST00000454018 TAF1LQ8IZX4 1826 aa11.51□□□□□ -0.57
SYNE1-214ENST00000454018 NGEFQ8N5V2 710 aa11.51□□□□□ -0.57
SYNE1-214ENST00000454018 RTF1Q92541 710 aaKnown RBP11.51□□□□□ -0.57
SYNE1-214ENST00000454018 FAM182BQ5T319 152 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 LAMB4A4D0S4 1761 aa11.5□□□□□ -0.57
SYNE1-214ENST00000454018 RREB1Q92766 1687 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms