RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 EZRP15311 586 aaKnown RBP9.09□□□□□ -0.95
NEDD9-204ENST00000448183 PRPF40BQ6NWY9 871 aaKnown RBP9.09□□□□□ -0.95
NEDD9-204ENST00000448183 SKAP1Q86WV1 359 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 MPHOSPH8Q99549 860 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 PRDM10Q9NQV6 1147 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 U3KPZ7 1027 aaPredicted RBP9.09□□□□□ -0.95
NEDD9-204ENST00000448183 MAP3K1Q13233 1512 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 MAGI1Q96QZ7 1491 aaPredicted RBP9.09□□□□□ -0.95
NEDD9-204ENST00000448183 KIF4BQ2VIQ3 1234 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 ESCO1Q5FWF5 840 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 ABCC11Q96J66 1382 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 SYNJ2O15056 1496 aa9.09□□□□□ -0.96
NEDD9-204ENST00000448183 TOP1P11387 765 aaKnown RBP9.08□□□□□ -0.96
NEDD9-204ENST00000448183 MYL6BP14649 208 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 CABP4P57796 275 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 ZNF397Q8NF99 534 aaPredicted RBP9.08□□□□□ -0.96
NEDD9-204ENST00000448183 NKTRP30414 1462 aaKnown RBP9.08□□□□□ -0.96
NEDD9-204ENST00000448183 EHBP1L1Q8N3D4 1523 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 JAKMIP3Q5VZ66 844 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 UBE2Q2Q8WVN8 375 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 MCM3P25205 808 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 ATP2B2Q01814 1243 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 DDX19AQ9NUU7 478 aaKnown RBP9.08□□□□□ -0.96
NEDD9-204ENST00000448183 SLC52A1Q9NWF4 448 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 LIMCH1Q9UPQ0 1083 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 RTEL1-TNFRSF6BF6WH68 1400 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 NSD3Q9BZ95 1437 aa9.08□□□□□ -0.96
NEDD9-204ENST00000448183 LRPPRCP42704 1394 aaKnown RBP9.07□□□□□ -0.96
NEDD9-204ENST00000448183 SPA17Q15506 151 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 SMARCA5O60264 1052 aaPredicted RBP9.07□□□□□ -0.96
NEDD9-204ENST00000448183 FAM69CQ0P6D2 419 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 C16orf45Q96MC5 204 aaPredicted RBP9.07□□□□□ -0.96
NEDD9-204ENST00000448183 SPG7Q9UQ90 795 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 CASQ1P31415 396 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 GSDMDP57764 484 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 SEPT11Q9NVA2 429 aaKnown RBP9.07□□□□□ -0.96
NEDD9-204ENST00000448183 RRS1Q15050 365 aaKnown RBP9.07□□□□□ -0.96
NEDD9-204ENST00000448183 DUSP27Q5VZP5 1158 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 RPGRIP1LQ68CZ1 1315 aa9.07□□□□□ -0.96
NEDD9-204ENST00000448183 KLHL40Q2TBA0 621 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 WWC2Q6AWC2 1192 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 BTBD11A6QL63 1104 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 DYNC1I1O14576 645 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 IDH1O75874 414 aaKnown RBP9.06□□□□□ -0.96
NEDD9-204ENST00000448183 CKAP2LQ8IYA6 745 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 C8orf76Q96K31 380 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 DHX29Q7Z478 1369 aaKnown RBP9.06□□□□□ -0.96
NEDD9-204ENST00000448183 BAG4O95429 457 aaKnown RBP9.06□□□□□ -0.96
NEDD9-204ENST00000448183 GIMAP7Q8NHV1 300 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 AIDAQ96BJ3 306 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 THUMPD2Q9BTF0 503 aaKnown RBP9.06□□□□□ -0.96
NEDD9-204ENST00000448183 TIAM1Q13009 1591 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 HMGB1P09429 215 aaKnown RBP9.06□□□□□ -0.96
NEDD9-204ENST00000448183 UVSSAQ2YD98 709 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 BMP2KLQ5H9B9 411 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 PAF1Q8N7H5 531 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 HECW1Q76N89 1606 aa9.06□□□□□ -0.96
NEDD9-204ENST00000448183 AQRO60306 1485 aaKnown RBP eCLIP9.05□□□□□ -0.963e-8■■■□□ 17.6
NEDD9-204ENST00000448183 KLHL10Q6JEL2 608 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 PRIMPOLQ96LW4 560 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 TRMT1Q9NXH9 659 aaKnown RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 ADCY5O95622 1261 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 GBP2P32456 591 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 FKBP15Q5T1M5 1219 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 FAM107BQ9H098 131 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 CCDC196A0A1B0GTZ2 297 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 POLR3GO15318 223 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 CAVIN2O95810 425 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 PAFAH1B1P43034 410 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 MAPK8IP2Q13387 824 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 TBC1D32Q96NH3 1257 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 RAI14Q9P0K7 980 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 LRP2BPQ9P2M1 347 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 GNAT3A8MTJ3 354 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 DHX37Q8IY37 1157 aaKnown RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 BOLA2Q9H3K6 86 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 TROQ12816 1431 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-204ENST00000448183 KIAA0586Q9BVV6 1533 aa9.05□□□□□ -0.96
NEDD9-204ENST00000448183 DAPK1P53355 1430 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 POTEB2H3BUK9 544 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 NESP48681 1621 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 NAIPQ13075 1403 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 ZNF165P49910 485 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 DYDC1Q8WWB3 177 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 GDPD2Q9HCC8 539 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 PPP4R3BQ5MIZ7 849 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 LUZP1Q86V48 1076 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 FSIP1Q8NA03 581 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 PHAXQ9H814 394 aaKnown RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 GOLGA6L9A6NEM1 432 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 C11orf95C9JLR9 678 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 STX6O43752 255 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 PPP1R12BO60237 982 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 USO1O60763 962 aaKnown RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 CETN2P41208 172 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 MAP2K1Q02750 393 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 TBC1D9Q6ZT07 1266 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 DDX54Q8TDD1 881 aaKnown RBP9.04□□□□□ -0.96
NEDD9-204ENST00000448183 SLC26A8Q96RN1 970 aa9.04□□□□□ -0.96
NEDD9-204ENST00000448183 BIVM-ERCC5R4GMW8 1640 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms