RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 FLAD1Q8NFF5 587 aa26.79■■□□□ 1.88
SHROOM1-204ENST00000440118 SCN11AQ9UI33 1791 aa26.79■■□□□ 1.88
SHROOM1-204ENST00000440118 ATP6V1AP38606 617 aa26.78■■□□□ 1.88
SHROOM1-204ENST00000440118 COL23A1Q86Y22 540 aaPredicted RBP26.78■■□□□ 1.88
SHROOM1-204ENST00000440118 SYT17Q9BSW7 474 aa26.77■■□□□ 1.88
SHROOM1-204ENST00000440118 ATG3Q9NT62 314 aa26.77■■□□□ 1.88
SHROOM1-204ENST00000440118 PHF14O94880 888 aa26.76■■□□□ 1.87
SHROOM1-204ENST00000440118 U2SURPO15042 1029 aaKnown RBP26.75■■□□□ 1.87
SHROOM1-204ENST00000440118 MSL1Q68DK7 614 aa26.75■■□□□ 1.87
SHROOM1-204ENST00000440118 RBM42Q9BTD8 480 aaKnown RBP26.75■■□□□ 1.87
SHROOM1-204ENST00000440118 CFAP53Q96M91 514 aa26.74■■□□□ 1.87
SHROOM1-204ENST00000440118 LINC00116Q8NCU8 138 aa26.73■■□□□ 1.87
SHROOM1-204ENST00000440118 COL3A1P02461 1466 aaPredicted RBP26.73■■□□□ 1.87
SHROOM1-204ENST00000440118 AKAP4Q5JQC9 854 aa26.72■■□□□ 1.87
SHROOM1-204ENST00000440118 ZNF831Q5JPB2 1677 aa26.72■■□□□ 1.87
SHROOM1-204ENST00000440118 MAP3K5Q99683 1374 aa26.71■■□□□ 1.87
SHROOM1-204ENST00000440118 GNPATO15228 680 aa26.71■■□□□ 1.87
SHROOM1-204ENST00000440118 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.7■■□□□ 1.86
SHROOM1-204ENST00000440118 ITPK1Q13572 414 aa26.7■■□□□ 1.86
SHROOM1-204ENST00000440118 COL5A3P25940 1745 aaPredicted RBP26.7■■□□□ 1.86
SHROOM1-204ENST00000440118 SSFA2P28290 1259 aa26.68■■□□□ 1.86
SHROOM1-204ENST00000440118 NFATC2IPQ8NCF5 419 aa26.68■■□□□ 1.86
SHROOM1-204ENST00000440118 YY1P25490 414 aa26.66■■□□□ 1.86
SHROOM1-204ENST00000440118 PTCD1O75127 700 aaKnown RBP26.65■■□□□ 1.86
SHROOM1-204ENST00000440118 MTHFSDQ2M296 383 aaKnown RBP26.64■■□□□ 1.86
SHROOM1-204ENST00000440118 SMIM5Q71RC9 77 aa26.64■■□□□ 1.86
SHROOM1-204ENST00000440118 AMIGO3Q86WK7 504 aa26.64■■□□□ 1.86
SHROOM1-204ENST00000440118 PELP1Q8IZL8 1130 aaKnown RBP26.64■■□□□ 1.86
SHROOM1-204ENST00000440118 NUDCQ9Y266 331 aa26.63■■□□□ 1.85
SHROOM1-204ENST00000440118 RTCBQ9Y3I0 505 aaKnown RBP26.63■■□□□ 1.85
SHROOM1-204ENST00000440118 MRC1P22897 1456 aa26.62■■□□□ 1.85
SHROOM1-204ENST00000440118 SLC52A2Q9HAB3 445 aa26.62■■□□□ 1.85
SHROOM1-204ENST00000440118 CHD4Q14839 1912 aa26.61■■□□□ 1.85
SHROOM1-204ENST00000440118 RNMTO43148 476 aaKnown RBP26.61■■□□□ 1.85
SHROOM1-204ENST00000440118 PPP2R1AP30153 589 aa26.61■■□□□ 1.85
SHROOM1-204ENST00000440118 GPR162Q16538 588 aa26.61■■□□□ 1.85
SHROOM1-204ENST00000440118 TJP1Q07157 1748 aa26.61■■□□□ 1.85
SHROOM1-204ENST00000440118 GAS2L2Q8NHY3 880 aa26.6■■□□□ 1.85
SHROOM1-204ENST00000440118 SLC4A9Q96Q91 983 aa26.6■■□□□ 1.85
SHROOM1-204ENST00000440118 LGR6Q9HBX8 967 aa26.6■■□□□ 1.85
SHROOM1-204ENST00000440118 CNTNAP4Q9C0A0 1308 aa26.6■■□□□ 1.85
SHROOM1-204ENST00000440118 ADAMTS7Q9UKP4 1686 aa26.59■■□□□ 1.85
SHROOM1-204ENST00000440118 TRAPPC3LQ5T215 181 aa26.58■■□□□ 1.85
SHROOM1-204ENST00000440118 MYH14Q7Z406 1995 aaKnown RBP26.58■■□□□ 1.85
SHROOM1-204ENST00000440118 CICQ96RK0 1608 aaPredicted RBP26.57■■□□□ 1.84
SHROOM1-204ENST00000440118 C4AP0C0L4 1744 aa26.57■■□□□ 1.84
SHROOM1-204ENST00000440118 NLGN2Q8NFZ4 835 aa26.57■■□□□ 1.84
SHROOM1-204ENST00000440118 U2AF1L5P0DN76 240 aaPredicted RBP26.56■■□□□ 1.84
SHROOM1-204ENST00000440118 U2AF1Q01081 240 aaKnown RBP eCLIP26.56■■□□□ 1.84
SHROOM1-204ENST00000440118 RC3H1Q5TC82 1133 aaKnown RBP26.56■■□□□ 1.84
SHROOM1-204ENST00000440118 ADRA2BP18089 450 aa26.55■■□□□ 1.84
SHROOM1-204ENST00000440118 PRKAR2BP31323 418 aa26.55■■□□□ 1.84
SHROOM1-204ENST00000440118 GNAT3A8MTJ3 354 aa26.54■■□□□ 1.84
SHROOM1-204ENST00000440118 RFC4P35249 363 aa26.54■■□□□ 1.84
SHROOM1-204ENST00000440118 TEFQ10587 303 aa26.54■■□□□ 1.84
SHROOM1-204ENST00000440118 CRKLP46109 303 aaKnown RBP26.53■■□□□ 1.84
SHROOM1-204ENST00000440118 SLC39A6Q13433 755 aa26.53■■□□□ 1.84
SHROOM1-204ENST00000440118 TTC5Q8N0Z6 440 aa26.53■■□□□ 1.84
SHROOM1-204ENST00000440118 RPS6KA4O75676 772 aa26.52■■□□□ 1.84
SHROOM1-204ENST00000440118 UBR2Q8IWV8 1755 aa26.52■■□□□ 1.84
SHROOM1-204ENST00000440118 CD2APQ9Y5K6 639 aa26.52■■□□□ 1.84
SHROOM1-204ENST00000440118 RSPH6AQ9H0K4 717 aa26.51■■□□□ 1.83
SHROOM1-204ENST00000440118 KCPQ6ZWJ8 1503 aa26.5■■□□□ 1.83
SHROOM1-204ENST00000440118 SIPA1L3O60292 1781 aaPredicted RBP26.5■■□□□ 1.83
SHROOM1-204ENST00000440118 UTRNP46939 3433 aa26.49■■□□□ 1.83
SHROOM1-204ENST00000440118 MMP10P09238 476 aa26.49■■□□□ 1.83
SHROOM1-204ENST00000440118 DNAJC10Q8IXB1 793 aa26.49■■□□□ 1.83
SHROOM1-204ENST00000440118 ARHGEF1Q92888 912 aaKnown RBP26.49■■□□□ 1.83
SHROOM1-204ENST00000440118 NEFMP07197 916 aa26.47■■□□□ 1.83
SHROOM1-204ENST00000440118 NLGN1Q8N2Q7 840 aa26.47■■□□□ 1.83
SHROOM1-204ENST00000440118 PHACTR3Q96KR7 559 aa26.46■■□□□ 1.83
SHROOM1-204ENST00000440118 CCDC87Q9NVE4 849 aa26.46■■□□□ 1.83
SHROOM1-204ENST00000440118 RTF1Q92541 710 aaKnown RBP26.45■■□□□ 1.82
SHROOM1-204ENST00000440118 FCHSD2O94868 740 aa26.44■■□□□ 1.82
SHROOM1-204ENST00000440118 GOLGB1Q14789 3259 aaKnown RBP26.44■■□□□ 1.82
SHROOM1-204ENST00000440118 IL17REQ8NFR9 667 aa26.43■■□□□ 1.82
SHROOM1-204ENST00000440118 GRIN3BO60391 1043 aa26.42■■□□□ 1.82
SHROOM1-204ENST00000440118 GYS1P13807 737 aa26.42■■□□□ 1.82
SHROOM1-204ENST00000440118 VSIG10Q8N0Z9 540 aa26.42■■□□□ 1.82
SHROOM1-204ENST00000440118 PARP3Q9Y6F1 533 aa26.42■■□□□ 1.82
SHROOM1-204ENST00000440118 INTS5Q6P9B9 1019 aaKnown RBP26.41■■□□□ 1.82
SHROOM1-204ENST00000440118 KIF13BQ9NQT8 1826 aa26.41■■□□□ 1.82
SHROOM1-204ENST00000440118 USP42Q9H9J4 1324 aaKnown RBP26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 ZPR1O75312 459 aa26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 CYP19A1P11511 503 aaPredicted RBP26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 YBX3P16989 372 aaKnown RBP eCLIP26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 SRP68Q9UHB9 627 aaKnown RBP26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 WWC3Q9ULE0 1092 aa26.4■■□□□ 1.82
SHROOM1-204ENST00000440118 CEMIPQ8WUJ3 1361 aa26.39■■□□□ 1.82
SHROOM1-204ENST00000440118 STARD3NLO95772 234 aa26.39■■□□□ 1.82
SHROOM1-204ENST00000440118 DDX10Q13206 875 aaKnown RBP26.39■■□□□ 1.82
SHROOM1-204ENST00000440118 ZNF790Q6PG37 636 aa26.39■■□□□ 1.82
SHROOM1-204ENST00000440118 DLG5Q8TDM6 1919 aa26.39■■□□□ 1.81
SHROOM1-204ENST00000440118 SOS1Q07889 1333 aaPredicted RBP26.39■■□□□ 1.81
SHROOM1-204ENST00000440118 COL15A1P39059 1388 aa26.38■■□□□ 1.81
SHROOM1-204ENST00000440118 BTBD11A6QL63 1104 aa26.38■■□□□ 1.81
SHROOM1-204ENST00000440118 N4BP2Q86UW6 1770 aaPredicted RBP26.38■■□□□ 1.81
SHROOM1-204ENST00000440118 FMNL2Q96PY5 1086 aa26.37■■□□□ 1.81
SHROOM1-204ENST00000440118 ZBTB1Q9Y2K1 713 aa26.37■■□□□ 1.81
SHROOM1-204ENST00000440118 HEG1Q9ULI3 1381 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms