RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 CCT4P50991 539 aaKnown RBP10.85□□□□□ -0.67
COPB1-202ENST00000439561 FBXO31Q5XUX0 539 aaPredicted RBP10.85□□□□□ -0.67
COPB1-202ENST00000439561 BICD2Q8TD16 824 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 PIBF1Q8WXW3 757 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 ATP7AQ04656 1500 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 STX6O43752 255 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 U2AF2P26368 475 aaKnown RBP eCLIP10.85□□□□□ -0.671e-6■■□□□ 13.2
COPB1-202ENST00000439561 ABCC1P33527 1531 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 GNAI3P08754 354 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 CCDC192P0DO97 292 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 CHMLP26374 656 aa10.85□□□□□ -0.67
COPB1-202ENST00000439561 DNM1Q05193 864 aaKnown RBP10.85□□□□□ -0.67
COPB1-202ENST00000439561 LETM1O95202 739 aaPredicted RBP10.84□□□□□ -0.67
COPB1-202ENST00000439561 IL13P35225 146 aa10.84□□□□□ -0.67
COPB1-202ENST00000439561 FOXO3O43524 673 aa10.84□□□□□ -0.67
COPB1-202ENST00000439561 AMPHP49418 695 aa10.84□□□□□ -0.67
COPB1-202ENST00000439561 TPD52L1Q16890 204 aaPredicted RBP10.84□□□□□ -0.67
COPB1-202ENST00000439561 JAKMIP1Q96N16 626 aaKnown RBP10.84□□□□□ -0.67
COPB1-202ENST00000439561 BCL2L12Q9HB09 334 aa10.84□□□□□ -0.67
COPB1-202ENST00000439561 ZSCAN22P10073 491 aaPredicted RBP10.83□□□□□ -0.67
COPB1-202ENST00000439561 UBE2HP62256 183 aa10.83□□□□□ -0.67
COPB1-202ENST00000439561 STK3Q13188 491 aa10.83□□□□□ -0.67
COPB1-202ENST00000439561 ERCC6L2Q5T890 1561 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 RTL1A6NKG5 1358 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 RIOK3O14730 519 aaKnown RBP10.83□□□□□ -0.68
COPB1-202ENST00000439561 CEBPZQ03701 1054 aaKnown RBP10.83□□□□□ -0.68
COPB1-202ENST00000439561 PUS7Q96PZ0 661 aaKnown RBP10.83□□□□□ -0.68
COPB1-202ENST00000439561 NPATQ14207 1427 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 PNMA6EA0A0J9YXQ4 647 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 KDM4AO75164 1064 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 MAPK8IP2Q13387 824 aaPredicted RBP10.83□□□□□ -0.68
COPB1-202ENST00000439561 UNC5CLQ8IV45 518 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 NECAB1Q8N987 351 aa10.83□□□□□ -0.68
COPB1-202ENST00000439561 TFIP11Q9UBB9 837 aaKnown RBP10.83□□□□□ -0.68
COPB1-202ENST00000439561 SYT1P21579 422 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 PTGS1P23219 599 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 FAM173BQ6P4H8 233 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 TCEANC2Q96MN5 208 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 RIMS2Q9UQ26 1411 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 CFAP74Q9C0B2 1584 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 GOLGA6L19H0YKK7 550 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 SRGAP3O43295 1099 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 GJB2P29033 226 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 AK2P54819 239 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 BRPF1P55201 1214 aaPredicted RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 ZRSR1Q15695 479 aaKnown RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 UVSSAQ2YD98 709 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 LARP1BQ659C4 914 aaKnown RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 PRPF40BQ6NWY9 871 aaKnown RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 CNTROBQ8N137 903 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 PTPRCP08575 1304 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 SHPRHQ149N8 1683 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 HSP90B1P14625 803 aaKnown RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 ZKSCAN1P17029 563 aaPredicted RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 HSP90AB2PQ58FF8 381 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 TNMDQ9H2S6 317 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 PYCARDQ9ULZ3 195 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 LIMCH1Q9UPQ0 1083 aa10.82□□□□□ -0.68
COPB1-202ENST00000439561 CCDC9Q9Y3X0 531 aaKnown RBP10.82□□□□□ -0.68
COPB1-202ENST00000439561 ZFYVE16Q7Z3T8 1539 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 PTCH1Q13635 1447 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 NUTM2GQ5VZR2 741 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 CCDC186Q7Z3E2 898 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 NUDT16Q96DE0 195 aaKnown RBP10.81□□□□□ -0.68
COPB1-202ENST00000439561 INTS4Q96HW7 963 aaKnown RBP10.81□□□□□ -0.68
COPB1-202ENST00000439561 NUP62CLQ9H1M0 184 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 PDRG1Q9NUG6 133 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 SLC52A1Q9NWF4 448 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 CGNQ9P2M7 1197 aaKnown RBP10.81□□□□□ -0.68
COPB1-202ENST00000439561 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.81□□□□□ -0.68
COPB1-202ENST00000439561 V9GYY5 206 aaPredicted RBP10.81□□□□□ -0.68
COPB1-202ENST00000439561 LUZP1Q86V48 1076 aa10.81□□□□□ -0.68
COPB1-202ENST00000439561 F13A1P00488 732 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 FLIIQ13045 1269 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 CCDC112Q8NEF3 446 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 PRDM4Q9UKN5 801 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 TET3O43151 1660 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 BECN2A8MW95 431 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 ZNF853P0CG23 659 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 EIF4A2Q14240 407 aaKnown RBP10.8□□□□□ -0.68
COPB1-202ENST00000439561 MAP3K11Q16584 847 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 KIF1BO60333 1816 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 TNNT1P13805 278 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 KRT85P78386 507 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 ATP2B3Q16720 1220 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 CCDC30Q5VVM6 783 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 QRICH2Q9H0J4 1663 aa10.8□□□□□ -0.68
COPB1-202ENST00000439561 IFIT2P09913 472 aaKnown RBP10.79□□□□□ -0.68
COPB1-202ENST00000439561 ANAPC15P60006 121 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 FILIP1Q7Z7B0 1213 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 CYP46A1Q9Y6A2 500 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 ERICH4A6NGS2 130 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 H3BQV1 296 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 RUFY2Q8WXA3 655 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 YTHDC2Q9H6S0 1430 aaKnown RBP10.79□□□□□ -0.68
COPB1-202ENST00000439561 TPM3P06753 285 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 HDGFL1Q5TGJ6 251 aa10.79□□□□□ -0.68
COPB1-202ENST00000439561 SHROOM2Q13796 1616 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 FAM135BQ49AJ0 1406 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms