RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 SSFA2P28290 1259 aa19.99■□□□□ 0.79
LIMS1-209ENST00000434274 KCNQ4P56696 695 aa19.99■□□□□ 0.79
LIMS1-209ENST00000434274 MRC1P22897 1456 aa19.99■□□□□ 0.79
LIMS1-209ENST00000434274 MSH5O43196 834 aa19.98■□□□□ 0.79
LIMS1-209ENST00000434274 ASAP1Q9ULH1 1129 aa19.97■□□□□ 0.79
LIMS1-209ENST00000434274 NUDCQ9Y266 331 aa19.97■□□□□ 0.79
LIMS1-209ENST00000434274 ATP6V1AP38606 617 aa19.96■□□□□ 0.79
LIMS1-209ENST00000434274 FHDC1Q9C0D6 1143 aaPredicted RBP19.96■□□□□ 0.79
LIMS1-209ENST00000434274 ATG3Q9NT62 314 aa19.96■□□□□ 0.79
LIMS1-209ENST00000434274 ADAMTS7Q9UKP4 1686 aa19.96■□□□□ 0.79
LIMS1-209ENST00000434274 VIRMAQ69YN4 1812 aaKnown RBP19.95■□□□□ 0.78
LIMS1-209ENST00000434274 COL23A1Q86Y22 540 aaPredicted RBP19.95■□□□□ 0.78
LIMS1-209ENST00000434274 SYT17Q9BSW7 474 aa19.95■□□□□ 0.78
LIMS1-209ENST00000434274 COL5A3P25940 1745 aaPredicted RBP19.95■□□□□ 0.78
LIMS1-209ENST00000434274 ADRA2BP18089 450 aa19.94■□□□□ 0.78
LIMS1-209ENST00000434274 GAS2L2Q8NHY3 880 aa19.94■□□□□ 0.78
LIMS1-209ENST00000434274 HMOX1P09601 288 aa19.93■□□□□ 0.78
LIMS1-209ENST00000434274 CNTNAP4Q9C0A0 1308 aa19.93■□□□□ 0.78
LIMS1-209ENST00000434274 U2SURPO15042 1029 aaKnown RBP19.92■□□□□ 0.78
LIMS1-209ENST00000434274 RC3H1Q5TC82 1133 aaKnown RBP19.92■□□□□ 0.78
LIMS1-209ENST00000434274 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.91■□□□□ 0.78
LIMS1-209ENST00000434274 GNPATO15228 680 aa19.91■□□□□ 0.78
LIMS1-209ENST00000434274 LINC00116Q8NCU8 138 aa19.91■□□□□ 0.78
LIMS1-209ENST00000434274 RBM42Q9BTD8 480 aaKnown RBP19.91■□□□□ 0.78
LIMS1-209ENST00000434274 SLC52A2Q9HAB3 445 aa19.91■□□□□ 0.78
LIMS1-209ENST00000434274 RTCBQ9Y3I0 505 aaKnown RBP19.9■□□□□ 0.78
LIMS1-209ENST00000434274 ITPK1Q13572 414 aa19.89■□□□□ 0.77
LIMS1-209ENST00000434274 NFATC2IPQ8NCF5 419 aa19.89■□□□□ 0.77
LIMS1-209ENST00000434274 RNMTO43148 476 aaKnown RBP19.88■□□□□ 0.77
LIMS1-209ENST00000434274 PPP2R1AP30153 589 aa19.88■□□□□ 0.77
LIMS1-209ENST00000434274 PHF14O94880 888 aa19.87■□□□□ 0.77
LIMS1-209ENST00000434274 MTHFSDQ2M296 383 aaKnown RBP19.87■□□□□ 0.77
LIMS1-209ENST00000434274 CHD4Q14839 1912 aa19.86■□□□□ 0.77
LIMS1-209ENST00000434274 TJP1Q07157 1748 aa19.86■□□□□ 0.77
LIMS1-209ENST00000434274 CNGB1Q14028 1251 aaPredicted RBP19.86■□□□□ 0.77
LIMS1-209ENST00000434274 CD2APQ9Y5K6 639 aa19.86■□□□□ 0.77
LIMS1-209ENST00000434274 GNAT3A8MTJ3 354 aa19.85■□□□□ 0.77
LIMS1-209ENST00000434274 NEFMP07197 916 aa19.85■□□□□ 0.77
LIMS1-209ENST00000434274 TRAPPC3LQ5T215 181 aa19.85■□□□□ 0.77
LIMS1-209ENST00000434274 VSIG10Q8N0Z9 540 aa19.85■□□□□ 0.77
LIMS1-209ENST00000434274 UBR2Q8IWV8 1755 aa19.85■□□□□ 0.77
LIMS1-209ENST00000434274 PTCD1O75127 700 aaKnown RBP19.84■□□□□ 0.77
LIMS1-209ENST00000434274 RPS6KA4O75676 772 aa19.84■□□□□ 0.77
LIMS1-209ENST00000434274 FCHSD2O94868 740 aa19.84■□□□□ 0.77
LIMS1-209ENST00000434274 TEFQ10587 303 aa19.84■□□□□ 0.77
LIMS1-209ENST00000434274 KLHL34Q8N239 644 aa19.84■□□□□ 0.77
LIMS1-209ENST00000434274 YY1P25490 414 aa19.83■□□□□ 0.77
LIMS1-209ENST00000434274 MSL1Q68DK7 614 aa19.83■□□□□ 0.77
LIMS1-209ENST00000434274 TTC5Q8N0Z6 440 aa19.83■□□□□ 0.77
LIMS1-209ENST00000434274 NLGN1Q8N2Q7 840 aa19.83■□□□□ 0.77
LIMS1-209ENST00000434274 C4AP0C0L4 1744 aa19.82■□□□□ 0.76
LIMS1-209ENST00000434274 U2AF1L5P0DN76 240 aaPredicted RBP19.82■□□□□ 0.76
LIMS1-209ENST00000434274 PRKAR2BP31323 418 aa19.82■□□□□ 0.76
LIMS1-209ENST00000434274 U2AF1Q01081 240 aaKnown RBP eCLIP19.82■□□□□ 0.76
LIMS1-209ENST00000434274 RSPH6AQ9H0K4 717 aa19.82■□□□□ 0.76
LIMS1-209ENST00000434274 PNNQ9H307 717 aaKnown RBP19.82■□□□□ 0.76
LIMS1-209ENST00000434274 SIPA1L3O60292 1781 aaPredicted RBP19.82■□□□□ 0.76
LIMS1-209ENST00000434274 KCPQ6ZWJ8 1503 aa19.81■□□□□ 0.76
LIMS1-209ENST00000434274 RFC4P35249 363 aa19.81■□□□□ 0.76
LIMS1-209ENST00000434274 SLC4A9Q96Q91 983 aa19.81■□□□□ 0.76
LIMS1-209ENST00000434274 CEMIPQ8WUJ3 1361 aa19.81■□□□□ 0.76
LIMS1-209ENST00000434274 MYH14Q7Z406 1995 aaKnown RBP19.81■□□□□ 0.76
LIMS1-209ENST00000434274 CRKLP46109 303 aaKnown RBP19.8■□□□□ 0.76
LIMS1-209ENST00000434274 RALBP1Q15311 655 aa19.8■□□□□ 0.76
LIMS1-209ENST00000434274 GPR162Q16538 588 aa19.8■□□□□ 0.76
LIMS1-209ENST00000434274 LGR6Q9HBX8 967 aa19.8■□□□□ 0.76
LIMS1-209ENST00000434274 GRIN3BO60391 1043 aa19.79■□□□□ 0.76
LIMS1-209ENST00000434274 RTF1Q92541 710 aaKnown RBP19.79■□□□□ 0.76
LIMS1-209ENST00000434274 HTATSF1O43719 755 aaKnown RBP19.78■□□□□ 0.76
LIMS1-209ENST00000434274 AMIGO3Q86WK7 504 aa19.78■□□□□ 0.76
LIMS1-209ENST00000434274 TEX13AQ9BXU3 409 aaPredicted RBP19.78■□□□□ 0.76
LIMS1-209ENST00000434274 CCDC87Q9NVE4 849 aa19.78■□□□□ 0.76
LIMS1-209ENST00000434274 ZEB1P37275 1124 aaPredicted RBP19.77■□□□□ 0.76
LIMS1-209ENST00000434274 KIF13BQ9NQT8 1826 aa19.76■□□□□ 0.75
LIMS1-209ENST00000434274 STARD3NLO95772 234 aa19.76■□□□□ 0.75
LIMS1-209ENST00000434274 ARHGEF1Q92888 912 aaKnown RBP19.76■□□□□ 0.75
LIMS1-209ENST00000434274 MMP10P09238 476 aa19.74■□□□□ 0.75
LIMS1-209ENST00000434274 ZNF790Q6PG37 636 aa19.74■□□□□ 0.75
LIMS1-209ENST00000434274 NLGN2Q8NFZ4 835 aa19.74■□□□□ 0.75
LIMS1-209ENST00000434274 FMNL2Q96PY5 1086 aa19.74■□□□□ 0.75
LIMS1-209ENST00000434274 USP42Q9H9J4 1324 aaKnown RBP19.74■□□□□ 0.75
LIMS1-209ENST00000434274 CYP19A1P11511 503 aaPredicted RBP19.73■□□□□ 0.75
LIMS1-209ENST00000434274 DNAJC10Q8IXB1 793 aa19.73■□□□□ 0.75
LIMS1-209ENST00000434274 IL17REQ8NFR9 667 aa19.73■□□□□ 0.75
LIMS1-209ENST00000434274 PARP3Q9Y6F1 533 aa19.73■□□□□ 0.75
LIMS1-209ENST00000434274 SOS1Q07889 1333 aaPredicted RBP19.73■□□□□ 0.75
LIMS1-209ENST00000434274 HEG1Q9ULI3 1381 aa19.72■□□□□ 0.75
LIMS1-209ENST00000434274 ZPR1O75312 459 aa19.72■□□□□ 0.75
LIMS1-209ENST00000434274 GYS1P13807 737 aa19.72■□□□□ 0.75
LIMS1-209ENST00000434274 SLC39A6Q13433 755 aa19.72■□□□□ 0.75
LIMS1-209ENST00000434274 C10orf71Q711Q0 1435 aa19.72■□□□□ 0.75
LIMS1-209ENST00000434274 PELP1Q8IZL8 1130 aaKnown RBP19.72■□□□□ 0.75
LIMS1-209ENST00000434274 COL15A1P39059 1388 aa19.71■□□□□ 0.75
LIMS1-209ENST00000434274 A0A087WZG4 1122 aa19.71■□□□□ 0.75
LIMS1-209ENST00000434274 INTS5Q6P9B9 1019 aaKnown RBP19.71■□□□□ 0.75
LIMS1-209ENST00000434274 PHACTR3Q96KR7 559 aa19.71■□□□□ 0.75
LIMS1-209ENST00000434274 MYBBP1AQ9BQG0 1328 aaKnown RBP19.71■□□□□ 0.75
LIMS1-209ENST00000434274 MAPK8IP3Q9UPT6 1336 aa19.71■□□□□ 0.75
LIMS1-209ENST00000434274 BTBD11A6QL63 1104 aa19.7■□□□□ 0.74
LIMS1-209ENST00000434274 TGFB2P61812 414 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms